mRNA_C-tenellus_contig10619.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10619.1.1
Unique NamemRNA_C-tenellus_contig10619.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Match: A0A024TTM3_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TTM3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.310e-9
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   10 QGEFEMSDILAVRRVEGYEYQVLVDWLGLSEDERTWEPLSSILEDVPVFLCK 165
            +G F + D+LA R V+G ++Q+LV WLGL ++E +WEP  ++ EDVPV L K
Sbjct:   42 EGGFHVEDLLAARVVDG-QHQILVKWLGLEDEEASWEPALNLYEDVPVLLRK 92
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BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Match: A0A024UI06_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI06_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.150e-7
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   13 GEFEMSDILAVRRVEGYEYQVLVDWLGLSEDERTWEPLSSILEDVPVFLCK 165
            G F +  +  VR+V    +QVLV WLGL EDE +WEP  ++LED+PV   K
Sbjct:  257 GGFHVERLEKVRKVADGSFQVLVKWLGLEEDESSWEPAKNLLEDIPVVFRK 307
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BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Match: A0A024TE76_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TE76_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.660e-7
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   13 GEFEMSDILAVRRVEGYEYQVLVDWLGLSEDERTWEPLSSILEDVPVFLCK 165
            G F +  +  VR+V    +QVLV WLGL EDE +WE   ++LED+PV   K
Sbjct:   22 GGFHVERLEKVRKVADGSFQVLVKWLGLEEDESSWELAKNLLEDIPVVFRK 72
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BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Match: A0A024TN15_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TN15_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.890e-7
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   67 YQVLVDWLGLSEDERTWEPLSSILEDVPVFL 159
            ++V+V WLGLS+DE TWEPLS++LEDVP+ L
Sbjct:  351 FEVMVYWLGLSDDEATWEPLSTLLEDVPILL 381
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BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Match: A0A3R6WKY8_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WKY8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.930e-7
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   67 YQVLVDWLGLSEDERTWEPLSSILEDVPVFL 159
            ++V+V WLGLS+DE TWEPLS++LEDVP+ L
Sbjct:   75 FEVMVYWLGLSDDEATWEPLSTLLEDVPILL 105
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BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Match: A0A6G0WUQ0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUQ0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.990e-7
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   49 RVEGYEYQVLVDWLGLSEDERTWEPLSSILEDVPV 153
            RVE  EYQ LV WLGL EDE +WEP+ S+ ED+PV
Sbjct: 1534 RVENGEYQALVYWLGLDEDEASWEPVQSLYEDIPV 1568
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BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Match: A0A3L6VD19_9STRA (Chromo domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VD19_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.110e-6
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   49 RVEGYEYQVLVDWLGLSEDERTWEPLSSILEDVPV 153
            R E  EYQ LV WLGL EDE +WEP+ S+ ED+P+
Sbjct:   28 REENGEYQALVYWLGLDEDEASWEPVHSLYEDIPI 62
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BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Match: A0A397EME0_9STRA (Chromo domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EME0_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.380e-6
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   13 GEFEMSDILAVRRVEGYEYQVLVDWLGLSEDERTWEPLSSILEDVPVFLCK 165
            G F M  +   R V+G ++QVLV WLGL ++E +WEP +++L+D+PV   K
Sbjct:   16 GGFHMERLDEARCVDG-QHQVLVKWLGLDDEESSWEPAANLLDDIPVVFRK 65
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BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Match: A0A6G0W508_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W508_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.870e-6
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   49 RVEGYEYQVLVDWLGLSEDERTWEPLSSILEDVPV 153
            RVE  EYQ LV WLGL+E+E +WEP+  + ED+PV
Sbjct:   54 RVENGEYQALVYWLGLNEEEASWEPVQCLYEDIPV 88
[Close]
BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Match: A0A3R6YA92_9STRA (Chromo domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YA92_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.830e-6
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   16 EFEMSDILAVRRVEGYEYQVLVDWLGLSEDERTWEPLSSILEDVPV 153
            EF ++ +  VR   G EYQ LV WLGL EDE +WEP+ S+ ED+P+
Sbjct:  117 EFHVAKLGDVREENG-EYQALVYWLGLDEDEASWEPVRSLYEDIPI 161
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10619.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024TTM3_9STRA5.310e-950.00Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A024UI06_9STRA2.150e-749.02Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TE76_9STRA5.660e-747.06Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A024TN15_9STRA7.890e-767.74Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A3R6WKY8_9STRA7.930e-767.74Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A6G0WUQ0_9STRA7.990e-765.71Uncharacterized protein n=3 Tax=Aphanomyces euteic... [more]
A0A3L6VD19_9STRA1.110e-660.00Chromo domain-containing protein (Fragment) n=1 Ta... [more]
A0A397EME0_9STRA1.380e-645.10Chromo domain-containing protein (Fragment) n=2 Ta... [more]
A0A6G0W508_9STRA1.870e-660.00Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A3R6YA92_9STRA2.830e-652.17Chromo domain-containing protein n=3 Tax=Aphanomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10619contigC-tenellus_contig10619:1702..1869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789140.7828274-CDS-C-tenellus_contig10619:1701..18691680789140.7828274-CDS-C-tenellus_contig10619:1701..1869Choristocarpus tenellus KU2346CDSC-tenellus_contig10619 1702..1869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10619.1.1prot_C-tenellus_contig10619.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10619 1702..1869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10619.1.1

>prot_C-tenellus_contig10619.1.1 ID=prot_C-tenellus_contig10619.1.1|Name=mRNA_C-tenellus_contig10619.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=56bp
MQNQGEFEMSDILAVRRVEGYEYQVLVDWLGLSEDERTWEPLSSILEDVP
VFLCK*
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mRNA from alignment at C-tenellus_contig10619:1702..1869-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10619.1.1 ID=mRNA_C-tenellus_contig10619.1.1|Name=mRNA_C-tenellus_contig10619.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=168bp|location=Sequence derived from alignment at C-tenellus_contig10619:1702..1869- (Choristocarpus tenellus KU2346)
ATGCAGAACCAGGGGGAATTTGAAATGTCTGATATTCTGGCAGTGCGCAG
GGTAGAAGGATATGAATACCAGGTTTTGGTGGATTGGTTGGGGTTAAGTG
AGGACGAAAGGACATGGGAGCCACTCTCTTCCATTTTAGAGGATGTCCCT
GTCTTTCTATGTAAATAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10619:1702..1869-

>mRNA_C-tenellus_contig10619.1.1 ID=mRNA_C-tenellus_contig10619.1.1|Name=mRNA_C-tenellus_contig10619.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=168bp|location=Sequence derived from alignment at C-tenellus_contig10619:1702..1869- (Choristocarpus tenellus KU2346)
ATGCAGAACCAGGGGGAATTTGAAATGTCTGATATTCTGGCAGTGCGCAG
GGTAGAAGGATATGAATACCAGGTTTTGGTGGATTGGTTGGGGTTAAGTG
AGGACGAAAGGACATGGGAGCCACTCTCTTCCATTTTAGAGGATGTCCCT
GTCTTTCTATGTAAATAG
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