mRNA_C-tenellus_contig10612.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10612.1.1
Unique NamemRNA_C-tenellus_contig10612.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10612.1.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 9.290e-32
Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:    1 NDGNLVTVQEGRFAFFVATEAPLLVGKILAERVGDDGERRVDLHCLRPASAHTPDNAALLTLEKYGKSTLVQGYIH-AGDRSGRTGKPKRVKDVIWEPVAGIVSTCE 318
            ND ++V+++EG FAFFVA  AP LVG+I AE V  DG R VDLH  RP + HT D AA LTL++YG+ T V+GY+  A D + R+GK K+VKDV WEPV GIV+TC+
Sbjct:  306 NDRDVVSIEEGSFAFFVARGAPFLVGRIAAESVDRDGTRGVDLHWFRPTNDHTRDKAASLTLDEYGERTFVEGYVMTASDGTRRSGKAKKVKDVSWEPVEGIVATCD 412
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BLAST of mRNA_C-tenellus_contig10612.1.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.050e-30
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:   16 VTVQEGRFAFFVATEAPLLVGKILAERVGDDGERRVDLHCLRPASAHTPDNAALLTLEKYGKSTLVQGYI-HAGDRSGRTGKPKRVKDVIWEPVAGIVSTCE 318
            ++VQ G FAFFVA  AP LVG+I+AER+G++GER VDLH LRP+S +  +NAA +TL +Y  ST V+G++    + +GR+GK KRVKDV WEPV GIV+TCE
Sbjct:  526 ISVQVGSFAFFVARRAPFLVGRIVAERLGEEGERGVDLHWLRPSSDYLSNNAASVTLREYSNSTFVEGFVLDTCNGNGRSGKAKRVKDVSWEPVEGIVATCE 627
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10612.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE9.290e-3257.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE1.050e-3058.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10612contigC-tenellus_contig10612:4453..4770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size319
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789140.4239364-CDS-C-tenellus_contig10612:4452..47701680789140.4239364-CDS-C-tenellus_contig10612:4452..4770Choristocarpus tenellus KU2346CDSC-tenellus_contig10612 4453..4770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10612.1.1prot_C-tenellus_contig10612.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10612 4453..4770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10612.1.1

>prot_C-tenellus_contig10612.1.1 ID=prot_C-tenellus_contig10612.1.1|Name=mRNA_C-tenellus_contig10612.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=106bp
NDGNLVTVQEGRFAFFVATEAPLLVGKILAERVGDDGERRVDLHCLRPAS
AHTPDNAALLTLEKYGKSTLVQGYIHAGDRSGRTGKPKRVKDVIWEPVAG
IVSTCE
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mRNA from alignment at C-tenellus_contig10612:4453..4770+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10612.1.1 ID=mRNA_C-tenellus_contig10612.1.1|Name=mRNA_C-tenellus_contig10612.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=318bp|location=Sequence derived from alignment at C-tenellus_contig10612:4453..4770+ (Choristocarpus tenellus KU2346)
AACGATGGAAACCTCGTCACCGTGCAGGAAGGCAGGTTTGCCTTTTTTGT
GGCAACGGAGGCGCCTCTCTTGGTCGGCAAGATCCTAGCGGAGCGCGTCG
GCGATGACGGGGAGCGTAGGGTAGATCTTCACTGCCTTCGGCCGGCCAGT
GCCCACACACCTGACAACGCCGCGCTTCTGACCCTTGAAAAGTATGGGAA
AAGTACATTAGTCCAAGGCTACATACACGCTGGAGATAGATCCGGGCGAA
CTGGGAAACCGAAGCGAGTTAAAGACGTAATCTGGGAACCCGTGGCGGGT
ATTGTTTCGACGTGCGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10612:4453..4770+

>mRNA_C-tenellus_contig10612.1.1 ID=mRNA_C-tenellus_contig10612.1.1|Name=mRNA_C-tenellus_contig10612.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=318bp|location=Sequence derived from alignment at C-tenellus_contig10612:4453..4770+ (Choristocarpus tenellus KU2346)
AACGATGGAAACCTCGTCACCGTGCAGGAAGGCAGGTTTGCCTTTTTTGT
GGCAACGGAGGCGCCTCTCTTGGTCGGCAAGATCCTAGCGGAGCGCGTCG
GCGATGACGGGGAGCGTAGGGTAGATCTTCACTGCCTTCGGCCGGCCAGT
GCCCACACACCTGACAACGCCGCGCTTCTGACCCTTGAAAAGTATGGGAA
AAGTACATTAGTCCAAGGCTACATACACGCTGGAGATAGATCCGGGCGAA
CTGGGAAACCGAAGCGAGTTAAAGACGTAATCTGGGAACCCGTGGCGGGT
ATTGTTTCGACGTGCGAG
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