mRNA_C-tenellus_contig10608.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10608.1.1
Unique NamemRNA_C-tenellus_contig10608.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10608.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10608contigC-tenellus_contig10608:4..2031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1655
Hectar predicted targeting categoryother localisation
Exons2
Cds size1359
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789140.3606617-CDS-C-tenellus_contig10608:3..2611680789140.3606617-CDS-C-tenellus_contig10608:3..261Choristocarpus tenellus KU2346CDSC-tenellus_contig10608 4..261 -
1680789140.3773537-CDS-C-tenellus_contig10608:636..17371680789140.3773537-CDS-C-tenellus_contig10608:636..1737Choristocarpus tenellus KU2346CDSC-tenellus_contig10608 637..1737 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789140.391203-UTR-C-tenellus_contig10608:1737..20311680789140.391203-UTR-C-tenellus_contig10608:1737..2031Choristocarpus tenellus KU2346UTRC-tenellus_contig10608 1738..2031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10608.1.1prot_C-tenellus_contig10608.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10608 4..1737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10608.1.1

>prot_C-tenellus_contig10608.1.1 ID=prot_C-tenellus_contig10608.1.1|Name=mRNA_C-tenellus_contig10608.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=453bp
MPDKQPLIIVRADGRMGEKPHCGESGQVVDQSVIDSRSMQGSHENLSRKF
HASMTARTTNGLRSCTIANDFSEDGRDVVTPLVANFEREETIDTESLLWG
PILSSPWEHSRSHTRRVGGSTSGSGSGGGGGGGGGGGGVDLGRDLSSGKQ
SGGYSTGWAGGGNGISPPSFTPFGIRGESMAFHTTEERGVKFIEDLSSWR
SSMQTQVSTTGDLETSMSATTSLSGVGARSSHGHIPQGLSSTEEQGGQVG
YLQERGLGGQWESEVMNLVGEAKRNRHPPTPLPDSRTVLVKTEEGWEMGR
SESVRNNEGTTSKRMRRQPKLRTHANEIDTSLMSANLENPYHLSHFDASA
KLPTLQQPSNWYTQQQGIKQRLALSGALTQPTSSSSLLAVPCQTGRGLGG
GERENPTNNDVSTLLQFTEGCDRFRSSSSSVSDLGAGGGGSRRTGGLDEV
RMV
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mRNA from alignment at C-tenellus_contig10608:4..2031-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10608.1.1 ID=mRNA_C-tenellus_contig10608.1.1|Name=mRNA_C-tenellus_contig10608.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2028bp|location=Sequence derived from alignment at C-tenellus_contig10608:4..2031- (Choristocarpus tenellus KU2346)
AACCCTTTTCCTTTTGTCGCATGATCTGTTTGTGTATACAATCTTTTGTA
CAAAGGACAGTATCAAGGGGAGGAATTCATTAGGTAATTAGTGACCTCAA
CAGCCTAGGTCTACACCATATATATGGATGGATGATATGGGATTTTCTTT
TAGCGAAAGGAGAGAAGCCATAATTACATCAAGTGGTTGTCGGAAGAAAG
TTGTACTCTCAGTTTCGCTTTGTGTGTGCTACGAACACAACAACTGAGTG
GTACAACCCTAAAGAGGTGTAGGGATTCCAGGGCCTGCTAGTTGATGCCA
GACAAACAGCCTTTAATCATTGTCAGGGCTGACGGCCGAATGGGGGAAAA
ACCACACTGTGGGGAATCTGGGCAAGTGGTAGACCAAAGTGTGATTGATA
GCAGGTCAATGCAGGGGAGTCATGAAAACCTCTCACGAAAATTTCATGCT
TCAATGACGGCACGAACAACGAATGGCTTAAGGAGCTGTACAATTGCCAA
CGATTTCTCTGAGGATGGCAGAGATGTAGTGACCCCTTTGGTGGCGAACT
TTGAAAGGGAGGAGACTATCGATACTGAGTCCTTGTTGTGGGGGCCAATA
TTGTCCTCTCCTTGGGAGCATTCAAGGTCGCACACTAGGAGGGTTGGAGG
ATCCACAAGTGGAAGTGGAAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTG
GTGGTGGTGTTGACCTCGGAAGAGACTTGTCTAGCGGAAAACAGTCTGGT
GGTTACTCTACTGGTTGGGCAGGAGGAGGTAATGGGATTTCGCCACCATC
GTTCACACCATTTGGTATCAGGGGGGAGTCAATGGCTTTCCATACCACGG
AAGAGCGAGGGGTTAAGTTTATTGAGGACCTATCGAGCTGGCGAAGTTCA
ATGCAAACGCAAGTTTCAACAACTGGGGACTTGGAGACATCGATGTCTGC
GACCACTTCGCTGTCAGGGGTAGGGGCACGGTCAAGTCACGGACATATAC
CGCAAGGGCTGAGCTCGACAGAGGAACAGGGAGGACAAGTGGGGTATCTT
CAGGAAAGGGGATTAGGGGGGCAATGGGAAAGTGAGGTAATGAATCTGGT
GGGTGAAGCAAAAAGGAATCGACATCCGCCGACACCATTGCCCGATAGCA
GAACTGTGTTGGTCAAAACAGAAGAGGGATGGGAGATGGGGAGAAGTGAG
AGTGTTAGGAACAATGAGGGCACAACTTCGAAGCGCATGCGTCGCCAACC
AAAGTTGCGGACTCATGCAAACGAAATCGATACTTCGCTCATGAGTGCCA
ATTTGGAAAACCCATACCATCTCTCCCACTTCGATGCCTCTGCGAAACTA
CCTACCCTCCAGCAACCCTCCAATTGGTACACACAACAACAAGGGGTGAG
AGGAATGCTGCAAGGCAATTACGCCTCCTCCACCCTCATCACAGTTGCAC
TTGCAAGAAATACGGCAGGCCCTACTAGGTTCACAAGTTGCCTCAATAAC
AAACCCAATGCCATCTTAATGATGCCCACCTTTTTAGGACTCCAATGCAA
TGACTACACTCTTTGCCTCCCAACTAGCGTAGGTCTGCTAGCGAGCTTTT
GTAGACTGTTCCAAATCCCTGAATTTAACTAATGATCAGTGTAGTTCGGC
ATTTGCACTGTCCATAATGCAAATCCCTAGAGTTCAAATGCGAAACCATC
CTTGACATTTTGAGGAAACATATTCGAACCAATTTCTTTTCCCCTACTTC
CCCCCCTCCCCCTTCTCCAGATCAAGCAGAGGCTCGCTTTGTCAGGTGCG
CTCACACAGCCTACAAGCTCAAGTAGCCTACTAGCAGTCCCGTGCCAGAC
AGGGAGAGGGTTGGGGGGTGGGGAGAGGGAGAACCCAACAAACAATGATG
TTAGTACCCTCCTACAGTTCACAGAGGGATGTGACAGATTCAGATCAAGC
AGCAGTTCTGTAAGTGACTTGGGTGCAGGGGGAGGGGGGAGCAGAAGGAC
TGGAGGTTTGGATGAGGTGAGGATGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig10608:4..2031-

>mRNA_C-tenellus_contig10608.1.1 ID=mRNA_C-tenellus_contig10608.1.1|Name=mRNA_C-tenellus_contig10608.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1359bp|location=Sequence derived from alignment at C-tenellus_contig10608:4..2031- (Choristocarpus tenellus KU2346)
ATGCCAGACAAACAGCCTTTAATCATTGTCAGGGCTGACGGCCGAATGGG
GGAAAAACCACACTGTGGGGAATCTGGGCAAGTGGTAGACCAAAGTGTGA
TTGATAGCAGGTCAATGCAGGGGAGTCATGAAAACCTCTCACGAAAATTT
CATGCTTCAATGACGGCACGAACAACGAATGGCTTAAGGAGCTGTACAAT
TGCCAACGATTTCTCTGAGGATGGCAGAGATGTAGTGACCCCTTTGGTGG
CGAACTTTGAAAGGGAGGAGACTATCGATACTGAGTCCTTGTTGTGGGGG
CCAATATTGTCCTCTCCTTGGGAGCATTCAAGGTCGCACACTAGGAGGGT
TGGAGGATCCACAAGTGGAAGTGGAAGTGGTGGTGGTGGTGGTGGTGGTG
GTGGTGGTGGTGGTGTTGACCTCGGAAGAGACTTGTCTAGCGGAAAACAG
TCTGGTGGTTACTCTACTGGTTGGGCAGGAGGAGGTAATGGGATTTCGCC
ACCATCGTTCACACCATTTGGTATCAGGGGGGAGTCAATGGCTTTCCATA
CCACGGAAGAGCGAGGGGTTAAGTTTATTGAGGACCTATCGAGCTGGCGA
AGTTCAATGCAAACGCAAGTTTCAACAACTGGGGACTTGGAGACATCGAT
GTCTGCGACCACTTCGCTGTCAGGGGTAGGGGCACGGTCAAGTCACGGAC
ATATACCGCAAGGGCTGAGCTCGACAGAGGAACAGGGAGGACAAGTGGGG
TATCTTCAGGAAAGGGGATTAGGGGGGCAATGGGAAAGTGAGGTAATGAA
TCTGGTGGGTGAAGCAAAAAGGAATCGACATCCGCCGACACCATTGCCCG
ATAGCAGAACTGTGTTGGTCAAAACAGAAGAGGGATGGGAGATGGGGAGA
AGTGAGAGTGTTAGGAACAATGAGGGCACAACTTCGAAGCGCATGCGTCG
CCAACCAAAGTTGCGGACTCATGCAAACGAAATCGATACTTCGCTCATGA
GTGCCAATTTGGAAAACCCATACCATCTCTCCCACTTCGATGCCTCTGCG
AAACTACCTACCCTCCAGCAACCCTCCAATTGGTACACACAACAACAAGG
GATCAAGCAGAGGCTCGCTTTGTCAGGTGCGCTCACACAGCCTACAAGCT
CAAGTAGCCTACTAGCAGTCCCGTGCCAGACAGGGAGAGGGTTGGGGGGT
GGGGAGAGGGAGAACCCAACAAACAATGATGTTAGTACCCTCCTACAGTT
CACAGAGGGATGTGACAGATTCAGATCAAGCAGCAGTTCTGTAAGTGACT
TGGGTGCAGGGGGAGGGGGGAGCAGAAGGACTGGAGGTTTGGATGAGGTG
AGGATGGTG
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