mRNA_C-tenellus_contig10604.1.4 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10604.1.4
Unique NamemRNA_C-tenellus_contig10604.1.4
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10604.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10604contigC-tenellus_contig10604:439..4432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2534
Hectar predicted targeting categoryother localisation
Exons3
Cds size882
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789140.1766398-UTR-C-tenellus_contig10604:438..6281680789140.1766398-UTR-C-tenellus_contig10604:438..628Choristocarpus tenellus KU2346UTRC-tenellus_contig10604 439..628 +
1680789140.2248335-UTR-C-tenellus_contig10604:2970..44321680789140.2248335-UTR-C-tenellus_contig10604:2970..4432Choristocarpus tenellus KU2346UTRC-tenellus_contig10604 2971..4432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789140.1865618-CDS-C-tenellus_contig10604:628..7831680789140.1865618-CDS-C-tenellus_contig10604:628..783Choristocarpus tenellus KU2346CDSC-tenellus_contig10604 629..783 +
1680789140.2012405-CDS-C-tenellus_contig10604:929..13861680789140.2012405-CDS-C-tenellus_contig10604:929..1386Choristocarpus tenellus KU2346CDSC-tenellus_contig10604 930..1386 +
1680789140.2161622-CDS-C-tenellus_contig10604:2700..29701680789140.2161622-CDS-C-tenellus_contig10604:2700..2970Choristocarpus tenellus KU2346CDSC-tenellus_contig10604 2701..2970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10604.1.4prot_C-tenellus_contig10604.1.4Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10604 629..2970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10604.1.4

>prot_C-tenellus_contig10604.1.4 ID=prot_C-tenellus_contig10604.1.4|Name=mRNA_C-tenellus_contig10604.1.4|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=294bp
MGYGSNCKVIVTEPEKWSISHIPPTRTKIRRMPTVTFTEAPVVLGKADVI
DRTPSPPSFPFQTISPNGRTDTSSKLADVDRVSPLKLSAIRTWVSQTLWG
VLSGSGTRRWPTLGQLELAGAFGSLGGTGTGAGPGPAGGCARVKPRERAN
FAGRWKRSSATNFVELLEFCDVPADVARMAREVTSIHLIEQDNLHDYFHV
CVIKGNRRVEDHFVIGDDDLNVHVSGGVTYESRARWEAGEQALVVTSTCA
QLGTEVVTVRHMDKSGDVMVLSQVARRDDSSHTVHARMVFERV*
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mRNA from alignment at C-tenellus_contig10604:439..4432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10604.1.4 ID=mRNA_C-tenellus_contig10604.1.4|Name=mRNA_C-tenellus_contig10604.1.4|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3994bp|location=Sequence derived from alignment at C-tenellus_contig10604:439..4432+ (Choristocarpus tenellus KU2346)
TGTATCGGTTGTATTCCTGTAATTTGTTATTCCAAAAATTGATTGTTGAG
TCATAAGTTCTTTCATTTAATTCCTATTCCTATACAGTGAGTGTTCTTAG
ACCACCCTTTGTCATTGCTTCTCATTCTGAGAAATAGCACATGAGTTACT
CAAACCCTCTGCATCTTGCGATCAATCCATCACCGAAGTGATGGGATATG
GATCTAATTGCAAGGTCATTGTCACGGAACCAGAAAAATGGAGCATCTCT
CATATCCCTCCCACTAGAACCAAGATTAGAAGAATGCCCACAGTAACCTT
TACCGAAGCCCCAGTTGTCCTCGGAAAAGCCGATGTGATAGACAGGTGAT
CTGCTAGTTGTGATGCACTCGTTCGTCCGGACAGCCTTGTCTTCCATGTG
TTGGAATGTCTTCCATGTACACGCAATGTTTACATCTTCTCTTTGTCAAG
TGTATTTAAATTGCCCCTTTGCTGCTTCTACTCCACAATAGGACTCCAAG
TCCTCCTAGTTTCCCCTTCCAGACCATCTCACCCAATGGGAGGACTGATA
CATCGTCGAAGTTGGCGGATGTTGATCGTGTGTCACCATTAAAACTCTCC
GCAATCCGTACGTGGGTATCTCAAACATTGTGGGGTGTGCTGAGTGGTAG
TGGCACTCGGAGGTGGCCAACGCTTGGACAGCTCGAGCTAGCTGGGGCAT
TCGGATCGTTGGGAGGCACTGGCACTGGTGCTGGACCAGGCCCAGCTGGA
GGGTGTGCCAGGGTTAAACCTCGAGAACGCGCCAACTTCGCGGGGAGGTG
GAAACGGTCGAGTGCCACAAACTTTGTTGAACTGTTGGAATTCTGCGATG
TCCCAGCTGATGTTGCAAGAATGGCGAGGGAGGTAACTTCCATACATCTC
ATCGAGCAGGATAATCTGCACGACTACTTCCATGTCTGCGTTATCAAGGT
GTGTGAATAGCAGGTATCCTCACGTGCTGGGGAGATCCCTTAGATCAAAG
AAAAAATATAGTACTTGGTCTTGGCATTAATATTTCAGGGTGGTGAGGGG
GACAAATGAGAGGTGCATGTGAAGCACTGTGTGGTGTAATGGAAAGGTAA
TACAACTCGGCTTTGAGAGAAACGAAAGAGAGTCTATTTTTCAAAAGAAT
AAGCAGGAAAGTCTCGATTTTAGTTTGCACCAGTATCCTTAGGAGGTCGT
TGCATATAGTACTGGGATAATTGTTGCCGTGAGGGTCTGATTCCAAATCG
CTTCTGAGGCTTGGAGCTGTACGTCGATGTCTCACAATTCAATCCCCTGT
GGTTACAGTGTGGTAATCTTAAAGGTCTTCAATTGCCCTAAGATGCTCAT
AACCAGCTTTACACTCTTTAACTGTGGAAATAAATTACTCTTCCGGCTCG
AACATCCAATCTGACTCAAGAGACATTGTCCAGCTCATGTCCCCAGTAAA
ATTGTCGGGTCGTAAGGACTTACTATGAAGTAACTCTGGTACTCTTCAAT
AAGGCCCCTCAGTCTCCTCCTTGCAGCCTCTATTGATTGTCTTAGGTTGT
AGCATCTGCGCCATAGGTAGTTCGTTTGCCTACTGTTGTAGTTGACTCTT
TTCTGCTCTAAGCTTGCCCTCGTCACCTCTGTCCTGCATGCACCTCGGAT
TGTTGTCGTTGCAACTCTCATTAAACGAATCCGTAATAGGTACTACTGCC
TATGAACCATCTCATATCTGAAGGTATTAGAATCAAAATTCATACAGCAC
TGCACCATACACATGTGGGTATAGAATGTTATCGTGATCAGTCACCGAAG
AGAGTTACCTCCATAAAGTATCAACAGAGAGATGAACGTCCCACACACAG
TCAACCTGAAATTCCACCATTCAACCTTGAATAGTTAGCACTTCTGGTTG
ATTAGTTCCTTAGTCCTGATATTTGAGCAAGTGAAAGATCATTTTGCGGG
CTTTGGAGGGTCATATTTGAAGCATGAGAAAACAGTATCTATGAAAGTAG
TACTGCTGTTTGGTTCTATGGTCGCATTTGCAATACCGTACCTCTCCTTG
CCGAAAATTAATTCTCTCCTCTAATGGACTGTAGTTCAATAATTTTTGGT
GTTCCAGGTATAGGCCCAATGTGAATAGTCACAATACAATAGAGTATCAG
CTGTATCTGCTCTTTCAGCACTTGCCAATAGTTCTCATTCACACCGCATC
TGAAGCTATCCTCAAGTCCTCCCCATATCCCCTCTCAATTGAACATACTA
TGTAACACACAGGGAAACAGGCGTGTCGAAGACCACTTTGTAATTGGTGA
TGATGATCTAAACGTTCATGTTTCAGGAGGGGTTACGTACGAATCACGTG
CCCGATGGGAAGCTGGAGAACAAGCCCTCGTGGTTACAAGCACATGTGCT
CAGCTGGGAACTGAGGTTGTGACAGTACGTCACATGGACAAATCGGGTGA
TGTGATGGTTCTGTCTCAAGTGGCACGCCGAGACGACTCGTCACACACAG
TTCATGCCCGAATGGTGTTTGAGCGTGTGTAATAATGTGATGCCCTACTT
AAGAGCTTTGCTTTTTACGCTATATGGATTCGTATTAGTAGTTTTATGCC
CTACATGACTTGAGCATTATGCAAAGCCGTAAGGTATACGCTTATTTTTT
TGTGTGTAAGTGTACAAGTCATTTGTTGTGGAGAGGGTGGCATGGGACCC
ATGTCAGTAGTTAAATGATGCAGGACCACTCTAGTAAGTCCCAACTACTA
GTGGGGGAGCTTGAGTCACTATGCACAACTCAAAAAGAAAAATCAATGTT
ATCTGTGGTGTTTCCAGGCTATGTACTCGTTCCTGATTAACATTGATTCG
ATTCTGGGTTGAACCTGGTGTTTGCCCAAGTCAAAGTATGTTGGATTGTG
TTTCTTGTTGCTTTGACTCACCTCCAGCATGCCATGGTCATGTGTATGTA
TGGCAGAATGCCAATTTTACTCTTTCCTTTGCCAGTACTAGAGGGGAGAT
TATGTTCTGGGAAAAAAGAAGGGAACTGTCACTGGGAAGGCGTTAGGTCT
GCATGGTGGCTCTTTAGTGCAGAGCATTGAAGATGTTTTTTATTGGATGG
GTAGTTATTGTGTACGTGATAGAGGGCGGGTGCATGTTAAAAATTGAATC
CCCCTTTTCACATTGCACTGAACCTTACTGGTGGAATGTGGAAAGGCGTG
TTTTCTCTTTTGGCTTACTGATTTCTTGGGTTCTTCCCTTGTTTTATGTA
CGCCACCACACACTACTTTCTAGTCTACCCTTCCAAGTGTTGCCCATGTC
AGTCCTCTTTGCCTACCAAAGATTGCATTTTTCCTGCATCATGTATTGAG
GCCCAAAATACAGTTGTATGGGAACTGGTGGGTGGTCATCCTCAAACGTT
TTGCCCACTCATTGTTTGGTCTTATGTTGTGGCCGGTGAGCAATTGCCTG
TTGTATATCCAAACCTTGTTGCTTTTCCCTGGTGCTTGTGAGGAGTATGT
GTTAAATCATTGCCTCCACTACGCAAATTAGTGGTAGGCATATCCTATTG
GTAGCAGTATGCTGTAGTATGTAGGAGGGTGAAAATGTTAGGAATAGTTG
TAGGTATGCAGCTTTGCTTTTCGCAATATCTGCACTGATCGTGTATTCTT
TGTTACATAGCCTTTTGGCAATAGAAATATTTTACGTGTGTGTGTTGGGC
ATACCACGGTATAGCCAATCTGCCGAGTTTTGACAGAGGTCCGTATCATC
GCCCCACTGTTCCCCCCTTTCCGCTGTCTGATATTCAACACATTTTGGAC
TGACCCTTTGTGTGCCCAAGTGAGTTGTTTTGTCTAGGTAACTTTAATTA
AGCAAATACCAGAGACGGCCTTGGAGAAGGTGTTTGCTTTGGTGCAAGTT
TGTAGAGTGTAATAGATACCTTCGACATGCTAGTAGTAGGGTTTTTTCCT
GTAGCCAGAATTGACGGTAATAATGCCATGTTCTCATTCACTTC
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Coding sequence (CDS) from alignment at C-tenellus_contig10604:439..4432+

>mRNA_C-tenellus_contig10604.1.4 ID=mRNA_C-tenellus_contig10604.1.4|Name=mRNA_C-tenellus_contig10604.1.4|organism=Choristocarpus tenellus KU2346|type=CDS|length=882bp|location=Sequence derived from alignment at C-tenellus_contig10604:439..4432+ (Choristocarpus tenellus KU2346)
ATGGGATATGGATCTAATTGCAAGGTCATTGTCACGGAACCAGAAAAATG
GAGCATCTCTCATATCCCTCCCACTAGAACCAAGATTAGAAGAATGCCCA
CAGTAACCTTTACCGAAGCCCCAGTTGTCCTCGGAAAAGCCGATGTGATA
GACAGGACTCCAAGTCCTCCTAGTTTCCCCTTCCAGACCATCTCACCCAA
TGGGAGGACTGATACATCGTCGAAGTTGGCGGATGTTGATCGTGTGTCAC
CATTAAAACTCTCCGCAATCCGTACGTGGGTATCTCAAACATTGTGGGGT
GTGCTGAGTGGTAGTGGCACTCGGAGGTGGCCAACGCTTGGACAGCTCGA
GCTAGCTGGGGCATTCGGATCGTTGGGAGGCACTGGCACTGGTGCTGGAC
CAGGCCCAGCTGGAGGGTGTGCCAGGGTTAAACCTCGAGAACGCGCCAAC
TTCGCGGGGAGGTGGAAACGGTCGAGTGCCACAAACTTTGTTGAACTGTT
GGAATTCTGCGATGTCCCAGCTGATGTTGCAAGAATGGCGAGGGAGGTAA
CTTCCATACATCTCATCGAGCAGGATAATCTGCACGACTACTTCCATGTC
TGCGTTATCAAGGGAAACAGGCGTGTCGAAGACCACTTTGTAATTGGTGA
TGATGATCTAAACGTTCATGTTTCAGGAGGGGTTACGTACGAATCACGTG
CCCGATGGGAAGCTGGAGAACAAGCCCTCGTGGTTACAAGCACATGTGCT
CAGCTGGGAACTGAGGTTGTGACAGTACGTCACATGGACAAATCGGGTGA
TGTGATGGTTCTGTCTCAAGTGGCACGCCGAGACGACTCGTCACACACAG
TTCATGCCCGAATGGTGTTTGAGCGTGTGTAA
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