mRNA_C-tenellus_contig10586.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10586.1.2
Unique NamemRNA_C-tenellus_contig10586.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10586.1.2 vs. uniprot
Match: A0A836CP45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP45_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.840e-15
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:  169 HWISGTSYAADAYIEHGEVDEELLKTIEPALKVLGGVVETIDTTNNVFTFKYKGHIRHQVGIEAYARMLIQEILPDYDAKMVTYRKRDNRD 441
            H I+   YA    +  G         I   LKVLG VVE ID+ +N+FTFKY G IR+++GIEAYAR +IQEI PD +  + T R RDNRD
Sbjct:  194 HCIAAREYALPVQMREG---------IAGPLKVLGSVVELIDSRDNIFTFKYNGQIRNKIGIEAYARQMIQEIYPDMEVLLFTNRVRDNRD 275
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BLAST of mRNA_C-tenellus_contig10586.1.2 vs. uniprot
Match: A0A6H5J9M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M3_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.590e-8
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:  199 DAYIEHGEVDEELLKTIEPALKVLGGVVETIDTTNNVFTFKYKGHIRHQVGIEAYARMLIQEILPDYDA-KMVTYRKRDNRD 441
            D  I+ G++DE+    I+P + V+  V + IDTT++VF+FKY G IRH+ GI ++A +LI+ + P     + VT R RD  D
Sbjct:  263 DRDIKVGDIDEDKKAAIQPMMSVIEQVCQLIDTTDDVFSFKYVGPIRHKKGIASWAMVLIKPLYPQVKGVEFVTNRTRDRTD 344
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BLAST of mRNA_C-tenellus_contig10586.1.2 vs. uniprot
Match: A0A7S1U4V7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4V7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.690e-6
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  208 IEHGEVDEELLKTIEPALKVLGGVVETIDTTNNVFTFKYKGHIRHQVGIEAYARMLIQEILPDYD-AKMVTYRKRD 432
            +E G +D  + +T+ P L+VL G V  I+   +V  F+Y G IR+Q+G++A+A+ +I EI P+ +   M T R RD
Sbjct:  112 VEPGPIDPIVEETLAPVLQVLKGAVTLIEAQKHVVRFEYHGLIRNQIGMQAWAKQMINEIAPEIENVVMCTERLRD 187
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10586.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CP45_9STRA3.840e-1549.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5J9M3_9PHAE6.590e-841.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U4V7_9STRA1.690e-639.47Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10586contigC-tenellus_contig10586:2..2223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0T2R8
Model size1124
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.02e-05
EggNOG OGs2EHAY@1|root,2SN0V@2759|Eukaryota,2XC92@2836|Bacillariophyta
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789138.8506598-CDS-C-tenellus_contig10586:1..2351680789138.8506598-CDS-C-tenellus_contig10586:1..235Choristocarpus tenellus KU2346CDSC-tenellus_contig10586 2..235 +
1680789138.8616135-CDS-C-tenellus_contig10586:433..5201680789138.8616135-CDS-C-tenellus_contig10586:433..520Choristocarpus tenellus KU2346CDSC-tenellus_contig10586 434..520 +
1680789138.8724577-CDS-C-tenellus_contig10586:1420..15461680789138.8724577-CDS-C-tenellus_contig10586:1420..1546Choristocarpus tenellus KU2346CDSC-tenellus_contig10586 1421..1546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789138.8886695-UTR-C-tenellus_contig10586:1546..22231680789138.8886695-UTR-C-tenellus_contig10586:1546..2223Choristocarpus tenellus KU2346UTRC-tenellus_contig10586 1547..2223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10586.1.2prot_C-tenellus_contig10586.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10586 2..1546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10586.1.2

>prot_C-tenellus_contig10586.1.2 ID=prot_C-tenellus_contig10586.1.2|Name=mRNA_C-tenellus_contig10586.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=149bp
ASRPRHACQVEEGRPKGTHLGTGIQCIHGCRRRFVGWRTESYLREGFQIP
EKDEWPHWISGTSYAADAYIEHGEVDEELLKTIEPALKVLGGVVETIDTT
NNVFTFKYKGHIRHQVGIEAYARMLIQEILPDYDAKMVTYRKRDNRDH*
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mRNA from alignment at C-tenellus_contig10586:2..2223+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10586.1.2 ID=mRNA_C-tenellus_contig10586.1.2|Name=mRNA_C-tenellus_contig10586.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2222bp|location=Sequence derived from alignment at C-tenellus_contig10586:2..2223+ (Choristocarpus tenellus KU2346)
GCCTCACGACCAAGACATGCGTGCCAAGTCGAGGAGGGAAGGCCAAAGGG
GACTCATTTGGGGACCGGGATTCAATGTATTCATGGGTGTAGACGCCGGT
TTGTAGGTTGGAGGACTGAAAGCTACTTGAGGGAAGGTTTCCAGATTCCA
GAAAAAGATGAGTGGCCCCATTGGATCTCAGGCACAAGCTATGCTGCAGA
TGCCTACATCGAACATGGAGAAGTCGATGAGGAGGTTCGTGCCGTACTAC
CTATCCGTAAGGACGATTCCATTTTGTTGCTCTTTCCCTGAAAAAAATAG
TTGGCTACCGGTCCGACTAGACCTGCACAGTGTAGGTTGAATAGAACTTG
GGACCAAATCTACAACAGCCGTGACCTGACCGTGCTCCTATACGATGCCC
ACTTTCTGGCCGCAATGAACCCCATCGCTCAGCTGTTAAAGACTATCGAA
CCGGCACTAAAAGTACTGGGCGGGGTTGTGGAGACAATAGACACAACGAA
CAACGTCTTCACGTTCAAGGTGCGTTTACACTTTTTTACCAAGCTCGAAG
TGTGTATATGCGAACCATGGCATTTGATTGACATGCATCGCACTGAGAGC
GAATTATCGCCTACTGCTGACAGCTATTGGTTTCATTCTATGCAATACAT
TGAACAAGGACAGGGATGTCCAACACTTCCACCTCTTGCCATTTTTGAAT
GGGAGGGACCAAGCCAACCCCCAGCTCCGTGAGTGGTAGGGAACGCTCCA
ATTTTACAACAAAGTAGACCAACTTCATATTTTTTTATCAGCTTGATTGA
AGTTAGCCGTAAGTCCTGCCGCGAATACGTTGTTCTCAGGGACGCCAATA
CTGCACTAATCGCACGTTTTCCCGGAATTGTGGGTAAAGAGCTCAATACT
TCTGTAGTAGAAGAAAACTAATATTATTTGGGGAAGGGGGGTTATTTCCT
AATCCCTTGCTTCAAAACTGCATTGTTGATTATTTCTCAGTAATGCCCTC
TGTCAAAATTACAGTTTGAATGAAACCGCATGATTTGCTCTAAATGGCTT
GAATGTTCGTTGTAATCAACTATCGTGACTTGTGGGTGATACCAAGACGA
GACTCTCGCTGAGAATTAAGTAATTCATTGGACTATGCGAATCACTTCCT
CTTTAGGTACTAAGTAAGTAAATGTACCTAAGTTTTGCTCTAGATTACGC
TTGTTTTTTTTCCTTCTCAACTGCGTGGAATCAAAACCGTGGGAGTATAC
TGCCCTCTTTTTTTTCAGGTGTGCAATTCCTCCTGCTTTATTTCTATTCA
TAGTTGATTGCTACACTGCGTCATCGTACCCATTCACCCCCCACCTTCTC
GACATGGGTGCTTACTTGTCTCTACCTTTGCTTGTTGTTTCTGTTAACGT
TTGGCCTCTTTTTCTGCAGTACAAGGGACACATACGCCACCAGGTTGGGA
TCGAGGCATATGCAAGGATGCTGATCCAGGAGATCCTCCCAGATTATGAT
GCAAAGATGGTAACGTACAGGAAACGAGATAATCGGGATCACTGAAGCAG
AGCAGACTAACCAAAGATTGACATCAACCCCAAACAGCAAGTTTGCTAAT
TTGTGAAGTGTCAAGTGTAACCTGTAGTAGGCTGGAACTGGATGGGGCAG
CAGCTGTAACACAGGCAAGACTTGAGTGTCCAGGGTTACGTCAGTGTTGA
GCAAGTGGCACTGAGGTTGGCGTGCACAGTATCACAAGATGTGCGCAAAT
GATATCGATTGCACATACAGAAATAGCCTGTATTTGTCGCATGCTTCATC
TCATCCTTAATTGTGATTTTGTGTGGTGTACCTACATCTTACTGCAATCA
CTTCGATCATACCATCCCTTACTCCGTCTGGTCTCTAGCATCTCAAACGA
GATTGCCTGTCACTTGAATGTGAGGTATCTTTTCACTTGCTGACACGAAG
CACGCAGCGCTTGATCCTTGTTCATAGTTTGACTTGATATTTAGTTATAT
TATCTTGATGATTGCTTCCAAGTCATGTTATTACTGATGGCTTGGCACAA
ATGGTGCCATCTGTACCTGCATGTGTCCCACCTCCTCGGCAAAAGCAGCT
GCTAAAGCAGCAGAAGTAACGCAGCAGCACATCATGTTGATAAACAGCTG
GTACCAAATATTCCACAGCCTGGAATGGAAGGCTTTGGAGGTAGGGCAAG
CATACCTTCCAGTAGAGTGCCC
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Coding sequence (CDS) from alignment at C-tenellus_contig10586:2..2223+

>mRNA_C-tenellus_contig10586.1.2 ID=mRNA_C-tenellus_contig10586.1.2|Name=mRNA_C-tenellus_contig10586.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=447bp|location=Sequence derived from alignment at C-tenellus_contig10586:2..2223+ (Choristocarpus tenellus KU2346)
GCCTCACGACCAAGACATGCGTGCCAAGTCGAGGAGGGAAGGCCAAAGGG
GACTCATTTGGGGACCGGGATTCAATGTATTCATGGGTGTAGACGCCGGT
TTGTAGGTTGGAGGACTGAAAGCTACTTGAGGGAAGGTTTCCAGATTCCA
GAAAAAGATGAGTGGCCCCATTGGATCTCAGGCACAAGCTATGCTGCAGA
TGCCTACATCGAACATGGAGAAGTCGATGAGGAGCTGTTAAAGACTATCG
AACCGGCACTAAAAGTACTGGGCGGGGTTGTGGAGACAATAGACACAACG
AACAACGTCTTCACGTTCAAGTACAAGGGACACATACGCCACCAGGTTGG
GATCGAGGCATATGCAAGGATGCTGATCCAGGAGATCCTCCCAGATTATG
ATGCAAAGATGGTAACGTACAGGAAACGAGATAATCGGGATCACTGA
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