mRNA_C-tenellus_contig10583.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10583.1.1
Unique NamemRNA_C-tenellus_contig10583.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Match: D7FX50_ECTSI (ApaG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX50_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 6.280e-62
Identity = 96/134 (71.64%), Postives = 117/134 (87.31%), Query Frame = 1
Query:    1 RVEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKSINQREKPQVVKGPGVIGQQPVLEPGQSFEYSSFCPIACAPKKGYQVIGRMQGSYMMVTGAVGEIAFEAKIDPFYLQLPKSVVDEHFG 402
            RVEV+SQY+ E+S P+KD+Y+F+Y++K+TN S Q VQLVSR WEIK+I   E PQ+VKGPGV+GQQPVLEPGQSFEYSS CPI CAPK+GYQV+GRM+GSY++V GAVGE AFEAKIDPFYL LP++V+DE  G
Sbjct:  299 RVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSSQTVQLVSRTWEIKAIEATEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQAVLDERAG 432          
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Match: A0A835ZBY5_9STRA (ApaG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY5_9STRA)

HSP 1 Score: 155 bits (393), Expect = 6.870e-44
Identity = 77/132 (58.33%), Postives = 99/132 (75.00%), Query Frame = 1
Query:    1 RVEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKSINQREKP---QVVKGPGVIGQQPVLEPGQSFEYSSFCPIACAPKKGYQVIGRMQGSYMMVTGAVGEIAFEAKIDPFYLQLPKSVV 387
            RVEV++QY  E+S P K +++F+YR++VTN S   VQL +R W I++ N +      Q VKGPGV+GQQPVLEPGQSFEYSS CP+   P+   +V+ RM+G++ MVTGAVGE  FEAKIDPFYL LP+SVV
Sbjct:  197 RVEVRAQYFPEQSDPAKAQFVFVYRVRVTNASRATVQLAARRWHIRTANAKTGKTAVQEVKGPGVVGQQPVLEPGQSFEYSSACPVFQRPRDSVRVLARMEGAFTMVTGAVGERGFEAKIDPFYLILPESVV 328          
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Match: H6WBA4_VAULI (ApaG domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA4_VAULI)

HSP 1 Score: 150 bits (380), Expect = 6.150e-42
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    4 VEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKSIN---QREKPQVVKGPGVIGQQPVLEPGQSFEYSSFCPIACAPKKGYQVIGRMQGSYMMVTGAVGEIAFEAKIDPFYLQLPKSVV 387
            VEV SQY  E+S P K  Y+F+YR+ +TN SP  VQLVSR+W+I++IN    + + Q V GPGV+GQQP+LEPGQ FEY+S CPI   PK   +V+GRM+G Y+MVTG+ G+  F+AKI+PFYL LP  V+
Sbjct:  198 VEVVSQYFREQSNPTKHRYIFLYRVAITNNSPFTVQLVSRKWQIRTINPNTNKTEVQEVSGPGVVGQQPILEPGQIFEYNSACPITQKPKDNIRVLGRMEGCYLMVTGSNGQHYFQAKINPFYLILPPDVM 328          
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Match: A0A835YH08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH08_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.630e-34
Identity = 70/144 (48.61%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    1 RVEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKSINQ---REKPQVVKGPGVIGQQPVLEPGQSFEYSSFCPIA--------------CAPKKGYQVIGRMQGSYMMVTGAVGEIAFEAKIDPFYLQLPKS 381
            RV V++QY  E+S P + +++F+YR++VTN S   VQL +R W I++++    R   Q V+GPGV+GQQPVLEPGQSFEYSS CP+                      +V+GRM+G++ MVTGAVGE  FEAKI+PF+L LP S
Sbjct:  216 RVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILPAS 359          
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Match: A0A3D0I9T8_9DELT (Protein ApaG n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D0I9T8_9DELT)

HSP 1 Score: 109 bits (273), Expect = 3.990e-28
Identity = 63/125 (50.40%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 RVEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKSINQREKPQVVKGPGVIGQQPVLEPGQSFEYSSFCPIACAPKKGYQVIGRMQGSYMMVTGAVGEIAFEAKIDPFYLQLP 375
            RVEV S+Y AE S P   E+ F Y +++TN   + VQL+SR W I     R+  Q VKGPGV+G+QP L PG+SFEY+S CP+  +       IG MQG+Y MVT A GE  F+AKI PF L  P
Sbjct:   12 RVEVTSRYVAERSAPEDGEWFFAYTVRITNQGAETVQLISRHWIITDAEGRQ--QQVKGPGVVGEQPTLRPGESFEYTSACPLGTS-------IGAMQGTYQMVTSA-GE-RFDAKIAPFTLSEP 125          
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Match: R7QG52_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG52_CHOCR)

HSP 1 Score: 114 bits (286), Expect = 4.390e-28
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    4 VEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKSINQREKPQVVKGPGVIGQQPVLEPGQSFEYSSFCPIACAPKKGYQVIGRMQGSYMMVTGAVGEIAFEAKIDPFYLQLP 375
            V V+S Y  E+S P +  ++F Y++ +TN   +  QLVSR W I S    E    VKGPGV+G+QPVLEPG+SFEY+S CP+  + K G  V+G M+G Y    G  G++ F   I  FYL+LP
Sbjct:  182 VHVESYYMPEQSLPEQSRFLFGYKVTITNEGNETCQLVSRHWTINSSGGSESE--VKGPGVVGRQPVLEPGESFEYNSACPVTVSLKGGQSVVGNMKGKYHFCKGDTGDVKFSVDIATFYLKLP 303          
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Match: A0A355EUK9_9BACT (Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A355EUK9_9BACT)

HSP 1 Score: 108 bits (269), Expect = 1.520e-27
Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 RVEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKSINQREKPQVVKGPGVIGQQPVLEPGQSFEYSSFCPIACAPKKGYQVIGRMQGSYMMVTGAVGEIAFEAKIDPFYLQLPKSV 384
            RV+V+S Y  E S+P ++ Y+F Y+++++N   +  QLVSREW I     R+  Q V+GPGV+G+QPVL PG++FEY+SFCP+          +G M GSY MVT   G+  F+A+I PF L +P +V
Sbjct:   10 RVQVESFYDEERSQPAQEHYLFFYQVRISNQGNETAQLVSREWIITDAQGRQ--QRVQGPGVVGEQPVLGPGEAFEYTSFCPLPTP-------VGTMHGSYQMVT-RTGD-RFDAEIAPFSLAMPHAV 126          
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Match: A0A662DYI8_9ACTN (Protein ApaG n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662DYI8_9ACTN)

HSP 1 Score: 107 bits (266), Expect = 4.560e-27
Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 RVEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKSINQREKPQVVKGPGVIGQQPVLEPGQSFEYSSFCPIACAPKKGYQVIGRMQGSYMMVTGAVGEIAFEAKIDPFYLQLPKSV 384
            RVEV+S Y  E+S P  +E+ F YRIK+TN   +  QLVSR W I   N R +   VKG GV+G+QP+L PG++FEY SFCP+  +        G MQG+Y M      E  F+A+I PF L +P S+
Sbjct:   12 RVEVESTYVPEQSDPAAEEWFFAYRIKITNEGSETAQLVSRHWTITDANGRTEE--VKGTGVVGKQPLLGPGEAFEYESFCPLRTS-------FGTMQGTYHMAPQGSDE--FDAEISPFALGMPNSI 128          
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Match: A0A2V7Z0F1_9BACT (Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7Z0F1_9BACT)

HSP 1 Score: 105 bits (262), Expect = 1.740e-26
Identity = 58/128 (45.31%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 RVEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKSINQREKPQVVKGPGVIGQQPVLEPGQSFEYSSFCPIACAPKKGYQVIGRMQGSYMMVTGAVGEIAFEAKIDPFYLQLPKSV 384
            RV+VQS Y  E S P ++ Y F Y++ ++N+  ++ QL+SREW +   N   + Q V+GPGV+G+QPVL PG++FEY+SFCP+          +G M GSY+MV    GE  FEA+I PF L +P +V
Sbjct:   10 RVQVQSFYDEERSSPPENYYFFAYKVTISNVGEEVAQLLSREWIVTDGN--GETQRVQGPGVVGEQPVLAPGEAFEYTSFCPLPTP-------VGSMHGSYLMVL-TNGE-RFEAEIAPFSLSVPHAV 126          
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Match: A0A7S4PNH5_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PNH5_GUITH)

HSP 1 Score: 109 bits (272), Expect = 9.740e-26
Identity = 62/137 (45.26%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    1 RVEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKS--INQREKPQVVKGPGVIGQQPVLEPGQSFEYSSFCPIACAPKKGY-------QVIGRMQGSYMMVTGAVGEIAFEAKIDPFYLQLPKSV 384
            R++    Y  + S P    +MF Y + +TNL+ +  QL+SR W IK+       K QVV G GVIG+QPVL P +SF YSS CP++    + Y       +V+G M+GSY+MVTGAVG+  F+A IDPFY  LP  V
Sbjct:  226 RIQTVGFYLPDPSSPSDGRFMFGYNVTITNLNNETCQLLSRTWLIKTRVTPSDSKTQVVSGSGVIGRQPVLGPNESFTYSSLCPLSL--DESYLRNLPQDRVLGSMEGSYLMVTGAVGQTGFQAIIDPFYFILPVDV 360          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10583.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX50_ECTSI6.280e-6271.64ApaG domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZBY5_9STRA6.870e-4458.33ApaG domain-containing protein n=1 Tax=Tribonema m... [more]
H6WBA4_VAULI6.150e-4256.49ApaG domain-containing protein n=1 Tax=Vaucheria l... [more]
A0A835YH08_9STRA1.630e-3448.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3D0I9T8_9DELT3.990e-2850.40Protein ApaG n=1 Tax=Deltaproteobacteria bacterium... [more]
R7QG52_CHOCR4.390e-2845.97Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A355EUK9_9BACT1.520e-2745.31Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID... [more]
A0A662DYI8_9ACTN4.560e-2746.09Protein ApaG n=1 Tax=Actinomycetia bacterium TaxID... [more]
A0A2V7Z0F1_9BACT1.740e-2645.31Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID... [more]
A0A7S4PNH5_GUITH9.740e-2645.26Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10583contigC-tenellus_contig10583:161..1828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FX50
PFAMsDUF525,UVR
Model size438
Max annot lvl2759|Eukaryota
KEGG koko:K06195
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.03e-62
EggNOG OGsCOG2967@1|root,KOG4408@2759|Eukaryota
Ec32 ortholog descriptionApaG domain
Ec32 orthologEc-10_004320.1
Descriptionmitochondrion morphogenesis
Cds size438
COG categoryP
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789138.795652-CDS-C-tenellus_contig10583:160..3221680789138.795652-CDS-C-tenellus_contig10583:160..322Choristocarpus tenellus KU2346CDSC-tenellus_contig10583 161..322 -
1680789138.8061466-CDS-C-tenellus_contig10583:1142..12621680789138.8061466-CDS-C-tenellus_contig10583:1142..1262Choristocarpus tenellus KU2346CDSC-tenellus_contig10583 1143..1262 -
1680789138.8148625-CDS-C-tenellus_contig10583:1672..18281680789138.8148625-CDS-C-tenellus_contig10583:1672..1828Choristocarpus tenellus KU2346CDSC-tenellus_contig10583 1673..1828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10583.1.1prot_C-tenellus_contig10583.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10583 161..1828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10583.1.1

>prot_C-tenellus_contig10583.1.1 ID=prot_C-tenellus_contig10583.1.1|Name=mRNA_C-tenellus_contig10583.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=146bp
RVEVQSQYHAEESKPVKDEYMFIYRIKVTNLSPQIVQLVSREWEIKSINQ
REKPQVVKGPGVIGQQPVLEPGQSFEYSSFCPIACAPKKGYQVIGRMQGS
YMMVTGAVGEIAFEAKIDPFYLQLPKSVVDEHFGRGGDEGMIGGW*
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mRNA from alignment at C-tenellus_contig10583:161..1828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10583.1.1 ID=mRNA_C-tenellus_contig10583.1.1|Name=mRNA_C-tenellus_contig10583.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1668bp|location=Sequence derived from alignment at C-tenellus_contig10583:161..1828- (Choristocarpus tenellus KU2346)
AGGGTGGAGGTGCAGAGTCAGTACCATGCTGAGGAGAGCAAGCCGGTCAA GGATGAGTACATGTTCATCTACCGGATAAAGGTCACAAATCTGTCCCCTC AGATCGTGCAATTGGTGTCCCGGGAATGGGAGATAAAGTCCATCAACCAG AGAGAGGTACTGCACTGCTGTGCGCTTTGGTGCTATACTGTGTACCTGTA TAGTAAAAAAGTATCCTTCATGGACGAGGAAGGGATGCGTTATTGTTTAT CGCCTGTGGATAAAACACTGTACCATAGGTTCATTTGGTTCCTGTTTAAT TATGTAATGAGTGTGGCTTCTCAGGTCACGATAAACGTTGAATGTACGGG TAATAATACATATATATATTGAATGTATCATTGCACCCGTGTTGATTAAC TCATGCAGGTACTGTTGTGTTCTTGTTTTTTTTATTTGCCCACTCAGAAC AGGGGGAAGGTGTTCCACCCTCCCCCACAACCCTGCCCAGCTTGTTCCCA CCACACCTGACACACGTACCCTTGGGCGCTTCTGGCCCCCTCCTACTCTC TTCCATTGTTTTTCAGAAGCCACAGGTGGTGAAGGGACCAGGAGTGATTG GACAACAGCCCGTGCTGGAGCCTGGGCAAAGCTTTGAGTACTCATCCTTC TGCCCAATTGCTTGTGCACCCAAGAAAGGATATCAGGTGTAAAGGACAGG CATGGCTTGATGTTGGCTGTGGGTTGTCTTTGCTCCCTTCTGGTGAGGGT GCATGTGCTGGTGTTATCTTGTGTCTTATGAATTACCGCTGGTCCTGAAG GCTATGTAGTTATGGTTCGGCTGTGCTCTGCATTTTTGGTTGTGTTTATG CATTAGTTGTGTATGTGTGTATGTGTGTGTGTTTGTTTGTCGTGTGGATT ACATGAGCTCCCATTTGCAATTTGCATTTTGGAAAAGGGGGAGGTGCAGA GTTTCACTCCTGTAGACTTTTGAGGTGTTGTGAATGCATGGGTAGGTTCC TATGTAATTGGGGGCGATGTGCACCTGAGCGTTTTGATTCCTTGATATTC ATGTGCTGCACCATGCACTGATGTAGCTCTCCTTGGGGAGGACTCAGGTT GGTAAGAAAGGATGTCCTCTGGATGGTTTATAAAACGTTGGTTTGGACAG GGTTGAGGAAAAGCATGTGGCAATGATGGTTTATAGCAGAGGGGATGGGG CTGGTGGTGTACTGTTTGTTGTCTTGTCACCTGCGAGAACAACACCAAAG GGTCATGTCTGATATCATGTAGAGCGTTGCTCTGTTCAGGAGGGAAGTAA GGACCTTCTCATCTGCACTGTGTGATTCATGGTTCAGTAAGTTTTTGTCA CATGCCTCTTAGGTTTGGACCAATGCATGAAAGTCAATTGGTCTTTGTGA AGCCTGACACATATTGATTTGGCTTCCTGGAGGTTTCTCCCTTCCCCCTC ACCCTTCTGTGTATATCTCACCATCAGGGCATGTCGTGGTTCCCTTCATT TATCAGGTCATTGGACGAATGCAGGGAAGTTACATGATGGTCACTGGGGC TGTGGGCGAGATCGCCTTTGAGGCAAAGATAGACCCTTTCTATCTCCAAC TCCCAAAGAGCGTGGTTGATGAGCATTTCGGCCGGGGGGGGGATGAGGGC ATGATTGGAGGCTGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10583:161..1828-

>mRNA_C-tenellus_contig10583.1.1 ID=mRNA_C-tenellus_contig10583.1.1|Name=mRNA_C-tenellus_contig10583.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=438bp|location=Sequence derived from alignment at C-tenellus_contig10583:161..1828- (Choristocarpus tenellus KU2346)
AGGGTGGAGGTGCAGAGTCAGTACCATGCTGAGGAGAGCAAGCCGGTCAA
GGATGAGTACATGTTCATCTACCGGATAAAGGTCACAAATCTGTCCCCTC
AGATCGTGCAATTGGTGTCCCGGGAATGGGAGATAAAGTCCATCAACCAG
AGAGAGAAGCCACAGGTGGTGAAGGGACCAGGAGTGATTGGACAACAGCC
CGTGCTGGAGCCTGGGCAAAGCTTTGAGTACTCATCCTTCTGCCCAATTG
CTTGTGCACCCAAGAAAGGATATCAGGTCATTGGACGAATGCAGGGAAGT
TACATGATGGTCACTGGGGCTGTGGGCGAGATCGCCTTTGAGGCAAAGAT
AGACCCTTTCTATCTCCAACTCCCAAAGAGCGTGGTTGATGAGCATTTCG
GCCGGGGGGGGGATGAGGGCATGATTGGAGGCTGGTGA
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