mRNA_C-tenellus_contig10571.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10571.2.1
Unique NamemRNA_C-tenellus_contig10571.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10571.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10571contigC-tenellus_contig10571:1501..2146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size646
Hectar predicted targeting categorysignal peptide
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789138.3882608-UTR-C-tenellus_contig10571:1500..15621680789138.3882608-UTR-C-tenellus_contig10571:1500..1562Choristocarpus tenellus KU2346UTRC-tenellus_contig10571 1501..1562 -
1680789138.4063714-UTR-C-tenellus_contig10571:1886..21461680789138.4063714-UTR-C-tenellus_contig10571:1886..2146Choristocarpus tenellus KU2346UTRC-tenellus_contig10571 1887..2146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789138.3978014-CDS-C-tenellus_contig10571:1562..18861680789138.3978014-CDS-C-tenellus_contig10571:1562..1886Choristocarpus tenellus KU2346CDSC-tenellus_contig10571 1563..1886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10571.2.1prot_C-tenellus_contig10571.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10571 1563..1886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10571.2.1

>prot_C-tenellus_contig10571.2.1 ID=prot_C-tenellus_contig10571.2.1|Name=mRNA_C-tenellus_contig10571.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=108bp
MVIQPFGALLQVSVALHPLVGFACTSKPLLLCTLFQEKQQQLFHFFSCQF
WPVLLLQRALVLSPVQQQCSSCGVFKCSNPRSSINIRIACPPHVCHPLLA
LTPAIQI*
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mRNA from alignment at C-tenellus_contig10571:1501..2146-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10571.2.1 ID=mRNA_C-tenellus_contig10571.2.1|Name=mRNA_C-tenellus_contig10571.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=646bp|location=Sequence derived from alignment at C-tenellus_contig10571:1501..2146- (Choristocarpus tenellus KU2346)
GGTGATGCTAGCGGTTTGCTTCTCTCAGTTATTTTGTTTGCTTTGTGGAA
GCGCACCATTTGAGGTTATTTAATGTACTATGGTGCATCACTGTGACCCA
GTGGCATCTTATACAGTCCACACCCACCCCTCGATGAAGGGTAGCTGCCA
TCTCCATCGGTTGCATCACCCCGTCACGTTTTATCTTGTAGAAGGGTTTG
TGTTTGCAGGATGTGAGTCGTGTAAAGGTTGTTGAGTTGACCCCGACCTC
GCATGTGTTTATGGTTATCCAGCCTTTTGGTGCATTGCTACAAGTGTCTG
TTGCTCTGCACCCATTAGTAGGATTTGCATGTACATCCAAGCCACTACTA
CTGTGCACCCTCTTCCAGGAAAAGCAGCAACAGCTGTTTCATTTTTTTTC
ATGCCAGTTTTGGCCGGTATTGCTCTTGCAGCGTGCCTTAGTTCTATCTC
CTGTGCAACAACAGTGTTCATCTTGTGGTGTGTTCAAATGCAGCAACCCA
AGATCTTCCATCAACATACGAATTGCATGTCCACCCCATGTATGTCACCC
CCTCCTTGCCCTGACCCCTGCAATTCAAATATGACAGAGATTGAGCCGGT
AGGTTTTGTTGTACTTCTAAGGCGGTTGCGTCACCCCATCGACTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10571:1501..2146-

>mRNA_C-tenellus_contig10571.2.1 ID=mRNA_C-tenellus_contig10571.2.1|Name=mRNA_C-tenellus_contig10571.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=324bp|location=Sequence derived from alignment at C-tenellus_contig10571:1501..2146- (Choristocarpus tenellus KU2346)
ATGGTTATCCAGCCTTTTGGTGCATTGCTACAAGTGTCTGTTGCTCTGCA
CCCATTAGTAGGATTTGCATGTACATCCAAGCCACTACTACTGTGCACCC
TCTTCCAGGAAAAGCAGCAACAGCTGTTTCATTTTTTTTCATGCCAGTTT
TGGCCGGTATTGCTCTTGCAGCGTGCCTTAGTTCTATCTCCTGTGCAACA
ACAGTGTTCATCTTGTGGTGTGTTCAAATGCAGCAACCCAAGATCTTCCA
TCAACATACGAATTGCATGTCCACCCCATGTATGTCACCCCCTCCTTGCC
CTGACCCCTGCAATTCAAATATGA
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