mRNA_C-tenellus_contig10569.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10569.3.1
Unique NamemRNA_C-tenellus_contig10569.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Match: D7G8D5_ECTSI (Grx_S14-glutaredoxin subgroup II n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.930e-17
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALESSEAKFI 141
            ++++++WPTIPQLYIDGEFTGG DIMI+SFQSGELKK LE +   F+
Sbjct:   56 VKEFSSWPTIPQLYIDGEFTGGADIMIESFQSGELKKTLEDAGCTFV 102
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BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Match: A0A6H5KLX0_9PHAE (Glutaredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.020e-17
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALESSEAKFI 141
            +++Y++WPTIPQLY+DGEFTGG DIMI+SFQSGELKK LE +   F+
Sbjct:  130 VKEYSSWPTIPQLYVDGEFTGGADIMIESFQSGELKKTLEDAGCTFV 176
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BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Match: UPI001A02314F (Grx4 family monothiol glutaredoxin n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A02314F)

HSP 1 Score: 73.9 bits (180), Expect = 5.900e-16
Identity = 28/42 (66.67%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALESS 126
            ++++ANWPTIPQLYI+GEF GGCDIMI+ +QSG+LKKA++++
Sbjct:   61 IKEFANWPTIPQLYINGEFVGGCDIMIEMYQSGDLKKAIDAA 102
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BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Match: A0A7Z7MTX3_9PROT (Glutaredoxin n=2 Tax=Sterolibacterium denitrificans TaxID=157592 RepID=A0A7Z7MTX3_9PROT)

HSP 1 Score: 73.9 bits (180), Expect = 6.710e-16
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALESSEA 132
            ++DYANWPTIPQLYI GEF GGCDIM + +QSGEL+K L++++A
Sbjct:   63 IKDYANWPTIPQLYIKGEFVGGCDIMKEMYQSGELQKELDAAKA 106
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BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Match: Q2Y5P5_NITMU (Glutaredoxin n=5 Tax=Nitrosomonadales TaxID=32003 RepID=Q2Y5P5_NITMU)

HSP 1 Score: 73.6 bits (179), Expect = 9.270e-16
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALESSEAK 135
            ++DY+NWPTIPQLY++GEF GG DI+ + +QSGEL+K LES+EAK
Sbjct:   62 IKDYSNWPTIPQLYVNGEFIGGSDIVSEMYQSGELQKLLESAEAK 106
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BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Match: A0A2W6VU85_9RHOO (Glutaredoxin n=5 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2W6VU85_9RHOO)

HSP 1 Score: 72.8 bits (177), Expect = 1.730e-15
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALE 120
            ++DYANWPTIPQLYI GEF GGCDIM + FQSGEL+K LE
Sbjct:   62 IKDYANWPTIPQLYIRGEFIGGCDIMKEMFQSGELQKELE 101
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BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Match: A0A833LV19_9RHOO (Glutaredoxin n=1 Tax=Dechloromonas sp. TaxID=1917218 RepID=A0A833LV19_9RHOO)

HSP 1 Score: 72.4 bits (176), Expect = 2.720e-15
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALESSEA 132
            ++DYANWPTIPQLY+ GEF GGCDIM + FQ+GEL+K LE   A
Sbjct:   63 VKDYANWPTIPQLYVKGEFVGGCDIMKEMFQAGELQKMLEGISA 106
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BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Match: A0A536ZWI8_9PROT (Glutaredoxin n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZWI8_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 3.850e-15
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALESSEAK 135
            +++YANWPT+PQLYI+GEF GG DIM + +QSGEL+K LESS  K
Sbjct:   62 IKEYANWPTVPQLYINGEFVGGSDIMREMYQSGELQKLLESSSQK 106
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BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Match: A0A0S8C5H4_9PROT (Glutaredoxin n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C5H4_9PROT)

HSP 1 Score: 71.6 bits (174), Expect = 5.190e-15
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALESSEA 132
            ++DYA WPTIPQLY++GEF GG DIM++ FQSGELKK L+ + A
Sbjct:   62 IKDYAKWPTIPQLYVNGEFVGGSDIMVELFQSGELKKLLDKTTA 105
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BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Match: A0A0K8NWV4_IDESA (Glutaredoxin n=1 Tax=Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6) TaxID=1547922 RepID=A0A0K8NWV4_IDESA)

HSP 1 Score: 71.6 bits (174), Expect = 5.330e-15
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALESSEA 132
            ++DYANWPTIPQLY+DGEF GG DIM++ FQSGEL+  ++ ++A
Sbjct:   63 IKDYANWPTIPQLYVDGEFVGGSDIMMEMFQSGELQPLVQGTQA 106
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10569.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8D5_ECTSI1.930e-1768.09Grx_S14-glutaredoxin subgroup II n=1 Tax=Ectocarpu... [more]
A0A6H5KLX0_9PHAE4.020e-1768.09Glutaredoxin domain-containing protein n=1 Tax=Ect... [more]
UPI001A02314F5.900e-1666.67Grx4 family monothiol glutaredoxin n=1 Tax=Proteob... [more]
A0A7Z7MTX3_9PROT6.710e-1668.18Glutaredoxin n=2 Tax=Sterolibacterium denitrifican... [more]
Q2Y5P5_NITMU9.270e-1666.67Glutaredoxin n=5 Tax=Nitrosomonadales TaxID=32003 ... [more]
A0A2W6VU85_9RHOO1.730e-1577.50Glutaredoxin n=5 Tax=Betaproteobacteria TaxID=2821... [more]
A0A833LV19_9RHOO2.720e-1568.18Glutaredoxin n=1 Tax=Dechloromonas sp. TaxID=19172... [more]
A0A536ZWI8_9PROT3.850e-1566.67Glutaredoxin n=1 Tax=Betaproteobacteria bacterium ... [more]
A0A0S8C5H4_9PROT5.190e-1565.91Glutaredoxin n=1 Tax=Betaproteobacteria bacterium ... [more]
A0A0K8NWV4_IDESA5.330e-1563.64Glutaredoxin n=1 Tax=Ideonella sakaiensis (strain ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10569contigC-tenellus_contig10569:5291..5437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G8D5
PFAMsGlutaredoxin
Model size147
Max annot lvl2759|Eukaryota
KEGG koko:K07390
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015291,GO:0015297,GO:0022804,GO:0022857,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
Exons1
Evalue3.16e-18
EggNOG OGsCOG0278@1|root,KOG0911@2759|Eukaryota
Ec32 ortholog descriptionMonothiol glutaredoxin-related
Ec32 orthologEc-19_004050.1
Descriptionprotein disulfide oxidoreductase activity
Cds size147
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789138.1311004-CDS-C-tenellus_contig10569:5290..54371680789138.1311004-CDS-C-tenellus_contig10569:5290..5437Choristocarpus tenellus KU2346CDSC-tenellus_contig10569 5291..5437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10569.3.1prot_C-tenellus_contig10569.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10569 5291..5437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10569.3.1

>prot_C-tenellus_contig10569.3.1 ID=prot_C-tenellus_contig10569.3.1|Name=mRNA_C-tenellus_contig10569.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=49bp
LQDYANWPTIPQLYIDGEFTGGCDIMIDSFQSGELKKALESSEAKFIE*
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mRNA from alignment at C-tenellus_contig10569:5291..5437-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10569.3.1 ID=mRNA_C-tenellus_contig10569.3.1|Name=mRNA_C-tenellus_contig10569.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=147bp|location=Sequence derived from alignment at C-tenellus_contig10569:5291..5437- (Choristocarpus tenellus KU2346)
CTTCAGGACTACGCGAACTGGCCTACGATCCCTCAGCTTTACATCGACGG
AGAATTCACTGGGGGTTGTGACATCATGATCGACTCCTTTCAATCGGGAG
AGCTCAAGAAGGCTCTTGAGAGTTCCGAGGCCAAGTTCATAGAATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10569:5291..5437-

>mRNA_C-tenellus_contig10569.3.1 ID=mRNA_C-tenellus_contig10569.3.1|Name=mRNA_C-tenellus_contig10569.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=147bp|location=Sequence derived from alignment at C-tenellus_contig10569:5291..5437- (Choristocarpus tenellus KU2346)
CTTCAGGACTACGCGAACTGGCCTACGATCCCTCAGCTTTACATCGACGG
AGAATTCACTGGGGGTTGTGACATCATGATCGACTCCTTTCAATCGGGAG
AGCTCAAGAAGGCTCTTGAGAGTTCCGAGGCCAAGTTCATAGAATGA
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