mRNA_C-tenellus_contig10566.3.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Match: A0A6H5JRH3_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH3_9PHAE) HSP 1 Score: 275 bits (702), Expect = 6.240e-79 Identity = 177/384 (46.09%), Postives = 218/384 (56.77%), Query Frame = 2 Query: 299 LSWTEVRSKVDMEKHHQGLRSAYESVEIGQRTLESLEDQQERLERSEVVLDSTRYIVERSARALRGMTFWGKIQNVFSDEPQIPQSYRGGARQTDRVGGGGEHTEAIPNEKEDEKLEGFICPECRKKFDTPEILMRHFDLAHKNGDPVAGAGVGTRSGSRDRETRPNHHTATSGVGFGHENGDAILKGPKGSFSRVGNAVEGSRSGDRTQLAVRREYHRPQSEQRGDPDPEVPLREQLFGNAA--VGRRDCGEARSGERGSFPSVLAEQREVMRAQDEHLDAVAQAVRELGLLGRNIGASLEEQGEVLGRVEEKTEATADRTALVTRKAARQTQRTKSKKPSFVRSVALQEVETGLFLTVTGEEVLLQEEELRNVCRFDVWQRQ 1444 L W +VR +D+ + +GLRSA+ESVE+G+ LE L+DQ+ERLERSE+VLDSTRY +ERSAR LRGMTFWGKI+N FS++P++PQ G R G GG N D EGFICP+CR F T + L+ H LAH S D + R G G G G A G V G +P L++QLFG G+R G R + V+AEQ+ VM +QD +LD+V QAV+ELGLLGRNIG SL+ QG L RV EK+ DRTA VTRKAARQ Q +K P+FV S+ALQEV TGL+L VTGEEV+LQ ELRNVCRF+ W+RQ Sbjct: 78 LLWAQVRDSIDVTERRRGLRSAHESVEVGREALERLDDQKERLERSEMVLDSTRYAIERSARVLRGMTFWGKIRNAFSNDPEVPQQPAGNTRAGTATGNGGNG-----NYDPDVPAEGFICPDCRGLFPTSDALVAHHGLAHT-----------IASADDDEDAR--------GWGAG---GGATQYGXXXXXXDVSGGSHGGPI--------------------PEPGSSTSLKDQLFGGREGWSGQRAGGAER---KXXXXGVIAEQKAVMASQDAYLDSVGQAVKELGLLGRNIGESLDGQGATLDRVAEKSSEANDRTAFVTRKAARQAQSSKPNNPTFVMSLALQEVTTGLYLAVTGEEVVLQGRELRNVCRFEAWERQ 411
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Match: D8LT98_ECTSI (Conserved C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT98_ECTSI) HSP 1 Score: 165 bits (418), Expect = 4.620e-40 Identity = 91/183 (49.73%), Postives = 113/183 (61.75%), Query Frame = 2 Query: 299 LSWTEVRSKVDMEKHHQGLRSAYESVEIGQRTLESLEDQQERLERSEVVLDSTRYIVERSARALRGMTFWGKIQNVFSDEPQIPQSYRGGARQTDRVGGGGEHTEAIPNEKEDEKLEGFICPECRKKFDTPEILMRHFDLAH---KNGDPVAGAGVGTRSGSRDRETRPN-HHTATSGVGFGH 835 L W +VR +D+ + +GLRSAYESVE+G+ LE L+DQ+ERLERSE+VLDSTRY +ERSAR LRGMTFWGKI+N FSD+PQ+PQ G R G GG N+ D EGFICP+CR F T ++L+ H+ AH + GD VAG G R + P H G GH Sbjct: 78 LLWAQVRDSIDVTERRRGLRSAYESVEVGREALERLDDQKERLERSEMVLDSTRYAIERSARILRGMTFWGKIRNAFSDDPQVPQQPAGSTRAGTATGDGGNG-----NDDPDTPAEGFICPDCRGLFPTSDVLVAHYGSAHTIAEGGDGVAGRLPGFRRAGGEGAGHPKPQHWGEPGRAGGH 255
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Match: A0A835YH57_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH57_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 4.510e-18 Identity = 100/394 (25.38%), Postives = 168/394 (42.64%), Query Frame = 2 Query: 356 RSAYESVEIGQRTLESLEDQQ----------------------ERLERSEVVLDSTRYIVERSARALRGMTFWGKIQNVFSDEPQIPQSYRGGARQTDRVGGGGEHTEAIPNEKEDEKLEGFICPECRKKFDTPEILMRHF----DLAHKNGDPVAGAGVGTRSGSRDRETRPNHHTATSGVGFGHENGDAILKGPKGSFSRVGNAVEGSRSGDRTQLAVRREYHRPQSEQRGDPDPEVPLREQLFGNAAVGRRDCGEARSGERGSFPSVLAEQREVMRAQDEHLDAVAQAVR-ELGLLGRNIGASLEEQGEVLGRVEEKTEATADRTALVTRKAARQTQRTKSKKPSFVRSVALQEVETGLFLTVTGEEVLLQEEELRNVCRFDVWQRQASQG 1456 R A+E++ +GQ T+ LE Q E L+RS +V+DST+Y++++SAR +RGMT WG++QN FSDEP + T + +EG+ICPECR + + + L+ HF + H N A + +R G+ E G G + + S N + R+ + + +E Q+ + L + +A CG G P + ++D ++ V +L + +++G SL EQ L + + + +DR VTR+AA+ T+ KP+ +VAL +G +L G EV L++ ++RNVC +W+R ++ G Sbjct: 10 RQAFETISVGQGTVVELEQQHDACLYLYSNFRAILPLSLNVNAESLQRSAMVVDSTQYLLDKSARVIRGMTMWGRMQNFFSDEPAPVLAAS---------------TPISNSTSSSAGMEGYICPECRMRCASADDLLAHFASLHEALHGNAHAEEPATISSREGAARNELFGEADKGRPGQGAWEQ---------RSSTGCSANGADNRRNSGGSGSGLAQEQRNIMRSQQAMFVTSITL---ILTSAIA--FICG-------GPPP------------EQAYIDTLSSTVLPQLQHVTQSLGTSLAEQEHTLDYLHDGADKASDRALAVTRQAAKMTRL----KPTASGTVALLHCTSGAYLAAVGSEVTLKQRQIRNVC---LWERHSTSG 348
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Match: A0A4D9CSU3_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSU3_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 8.080e-18 Identity = 102/372 (27.42%), Postives = 157/372 (42.20%), Query Frame = 2 Query: 353 LRSAYESVEIGQRTLESLEDQQERLERSEVVLDSTRYIVERSARALRGMTFWGKIQNVFSDEPQIPQSYRGGARQTDRVGGGGEHTEAIPNEKEDEKLEGFICPECRKKFDTPEILMRHFDLAHKNGDPVAGAGVGTRSGSRDRETRPNHHTATSGVGFGHENGDAILKGPKGSFSRVGNAVEGSRSGDRTQLAVRREYHRPQSEQRGDPDPEVPLREQLFGNAAVGRR-DCGEARSGERGSFPSVLAEQREVMRAQDEHLDAVAQAVRELGLLGRNIGASLEEQGEVLGRVEEKTEATADRTALVTRKAARQTQRTK---SKKPSFVRSVALQEVETGLFLTVTGEEVLLQEEELRNVCRFDVWQRQASQG 1456 LR A+ESV IG+ TL ++ QQE L+RSE V+DS Y++++SAR LRGMT+WG ++N FS+EP+ P+ TP L DR A L+GP G ++G+RT+ + G +P R++LF G D R+ G P L+E V R QD++L+++ +++ E +G + +L EQ + R+E +E D T V RKAAR ++ +++P + VA +EV +GLF++V GEE+ LQE + C+F + Q G Sbjct: 62 LRVAHESVAIGRETLTAVAGQQEALDRSEAVVDSNLYVIKKSARTLRGMTWWGSLRNYFSEEPEAPRPR------------------------------------------TPTWLA-------------------------DRR--------------------AGLRGP------------GQQAGERTEAHSSDAPLWRDQPRDGCSNPVKDERQELFARRVNGETADARLKRAHVAGQGPQSLSE---VARMQDDYLESLGKSLDEQRGIGGTLHEALREQRVQVDRLEAGSEGLEDATRAVIRKAARASRARGGWGAERPRLYKFVAFREVRSGLFISVAGEELRLQEPHMSKACQFAAYTSQTLTG 331
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Match: A0A2P4Y065_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y065_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 3.430e-14 Identity = 56/153 (36.60%), Postives = 78/153 (50.98%), Query Frame = 2 Query: 335 EKHHQGLRSAYESVEIGQRTLESLEDQQERLERSEVVLDSTRYIVERSARALRGMTFWGKIQNVFSDEPQIPQSYRGGARQTDRVGGGGEHTEAIPNEKEDEKLEGFICPECRKKFDTPEILMRHFDLAHKNGDPVAGAGVGTRSGSRDRETR 793 E+H Q LR ES+++G+ T +L Q ERL RSE VLD T+ V+ S R LRGMT+ G + N FS+ PQ+ N++ DE GFICP+C+ F++PE L H+ H+ G GV G+R + R Sbjct: 16 ERHTQALRDTAESLQMGRATAHALSMQAERLGRSERVLDETQATVDMSKRVLRGMTWSGWLYNKFSNAPQLSA-----------------------NKRADEIAMGFICPDCKVMFESPEQLGNHYGSVHEKWRH--GEGVQNLVGNRHDQIR 143
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Match: A0A6A3IYT2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IYT2_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.510e-13 Identity = 56/161 (34.78%), Postives = 78/161 (48.45%), Query Frame = 2 Query: 338 KHHQGLRSAYESVEIGQRTLESLEDQQERLERSEVVLDSTRYIVERSARALRGMTFWGKIQNVFSDEPQIPQSYRGGARQTDRVGGGGEHTEAIPNEKEDEKLEGFICPECRKKFDTPEILMRHFDLAHKNGDPVAGAGVGTRSGSRDRETRPNHHTATSG 820 +H Q LR ES+++G+ T +L Q E+L RSE VLD T+ V+ S R LRGMT+ G + N FS P++ + R+TD + GFICPEC+ F +PE L H+ H+ G A + R R+ RP T G Sbjct: 16 RHSQALRDTAESLQLGRATAHTLSMQSEQLGRSERVLDETQATVDVSKRVLRGMTWSGWLYNKFSAAPELSTN-----RETDEI------------------AMGFICPECKVMFQSPEQLGTHYSSVHEGGAEPARSFAENRQ--RETHIRPQKQQQTVG 151
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Match: A0A225WI26_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WI26_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 2.570e-13 Identity = 50/131 (38.17%), Postives = 67/131 (51.15%), Query Frame = 2 Query: 338 KHHQGLRSAYESVEIGQRTLESLEDQQERLERSEVVLDSTRYIVERSARALRGMTFWGKIQNVFSDEPQIPQSYRGGARQTDRVGGGGEHTEAIPNEKEDEKLEGFICPECRKKFDTPEILMRHFDLAHKN 730 +H Q LR ES+++G+ T +L Q E+L RSE VLD T+ V+ S R LRGMT+ G N FS PQ+ N+ DE GFICPEC+ F++PE L H+ H+N Sbjct: 16 RHTQALRDTAESLQMGRATAHTLSMQAEQLGRSERVLDETQATVDMSKRVLRGMTWSGWFYNKFSSAPQLSA-----------------------NKDPDEIAMGFICPECKVMFESPEQLAMHYASVHEN 123
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Match: G4Z4Y6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z4Y6_PHYSP) HSP 1 Score: 82.4 bits (202), Expect = 5.070e-13 Identity = 59/178 (33.15%), Postives = 80/178 (44.94%), Query Frame = 2 Query: 338 KHHQGLRSAYESVEIGQRTLESLEDQQERLERSEVVLDSTRYIVERSARALRGMTFWGKIQNVFSDEPQIPQSYRGGARQTDRVGGGGEHTEAIPNEKEDEKLEGFICPECRKKFDTPEILMRHFDLAHKN----GDPVAGAGVGTRSGSRDRETRPNHHTATSGVGFGHENGDAILK 859 +H Q LR ES+++G+ T +L Q E+L RSE VLD T+ V+ S R LRGMT+ G + N FS PQ+ PN+ E GFICPEC+ F +PE L H+ H+ GD +SG R + TA + E D L+ Sbjct: 15 RHRQALRDTAESLQMGRSTAHTLSMQAEQLGRSERVLDETQATVDMSKRVLRGMTWSGWLYNKFSAAPQLS-----------------------PNKDAAEIAMGFICPECKVMFQSPEQLGTHYSSVHERRPEGGDRSRSFEKNWQSGGPSRPQQRQQQTAVAKCSSVEEVHDKFLR 169
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Match: A0A3M6V7G6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7G6_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 6.640e-11 Identity = 53/163 (32.52%), Postives = 79/163 (48.47%), Query Frame = 2 Query: 335 EKHHQGLRSAYESVEIGQRTLESLEDQQERLERSEVVLDSTRYIVERSARALRGMTFWGKIQNVFSDEPQIPQSYRGGARQTDRVGGGGEHTEAIPNEKEDEKLEGFICPECRKKFDTPEILMRHFDLAHKNGDPVAGAGVGTRSGSRDRETRPNHHTATSGV 823 ++H Q L+ +S++IG+ T +L Q E+L RSE V+D T+ V+ S R LRGM++ G + N FS ++ N+K DE + GFICPEC+ F +PE L H+ H+N V TR + DR+ + T V Sbjct: 16 QRHTQALQDTAKSLQIGRATAHTLSMQTEQLGRSERVVDETQASVDMSKRILRGMSWSGWLYNKFSC------------------------SQVSTNQKTDEIIMGFICPECKILFKSPEQLGMHYHTKHENKTEETRTKVDTRW-TEDRKVQEQSQKNTGNV 153
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Match: A0A0P1AC11_PLAHL (Conserved c2h2 zinc finger protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AC11_PLAHL) HSP 1 Score: 75.5 bits (184), Expect = 8.360e-11 Identity = 46/138 (33.33%), Postives = 70/138 (50.72%), Query Frame = 2 Query: 311 EVRSKVDMEKHHQGLRSAYESVEIGQRTLESLEDQQERLERSEVVLDSTRYIVERSARALRGMTFWGKIQNVFSDEPQIPQSYRGGARQTDRVGGGGEHTEAIPNEKEDEKLEGFICPECRKKFDTPEILMRHFDLAH 724 EV + ++H Q LR ES+++G+ T + L Q E++ RSE ++D T+ V + R LRGMT+ G I N FS PQ N ++D+ GFICP+C+ KF + + L RH++ H Sbjct: 5 EVSEREWEQRHTQALRDTAESLQLGRSTAQVLSMQTEQINRSEKLVDETQATVAITKRVLRGMTWSGWIYNKFSTVPQFSD-----------------------NNEQDQIAMGFICPDCKVKFQSADQLGRHYNNIH 119 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10566.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10566.3.1 >prot_C-tenellus_contig10566.3.1 ID=prot_C-tenellus_contig10566.3.1|Name=mRNA_C-tenellus_contig10566.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=466bp MKERDELFGSIGKTVNHSTRNSDQGSRVNGAASGWDAAANFSSGKEQSLSback to top mRNA from alignment at C-tenellus_contig10566:2161..5529+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10566.3.1 ID=mRNA_C-tenellus_contig10566.3.1|Name=mRNA_C-tenellus_contig10566.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3369bp|location=Sequence derived from alignment at C-tenellus_contig10566:2161..5529+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10566:2161..5529+ >mRNA_C-tenellus_contig10566.3.1 ID=mRNA_C-tenellus_contig10566.3.1|Name=mRNA_C-tenellus_contig10566.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1398bp|location=Sequence derived from alignment at C-tenellus_contig10566:2161..5529+ (Choristocarpus tenellus KU2346)back to top |