mRNA_C-tenellus_contig10546.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10546.1.1
Unique NamemRNA_C-tenellus_contig10546.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Match: A0A6H5JD86_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JD86_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 1.930e-101
Identity = 144/223 (64.57%), Postives = 181/223 (81.17%), Query Frame = 1
Query:    1 MEEKDGSTPPLHCVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLKEMSCVLCKTEMDRVMVCDSESLRPFEDFHVWGDSAGPGYEWEEQSRMFLPKSYSQGYVRMLQEHRCHTEGCHHPKYDHMQGLEKHLREQHKLYFCKVCLRERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTRYYNNTQLHQHLVKDHFSCHLCEKMGILHKVH 669
            M E+  S    HCVVCVEEID E+ LHA GPCNHLGVCSLCYLRLR+L+KE +CVLCKT MDRV+VC++E++RPFE+F +WGD+AGP Y+W+++SR+FLPK+Y++ +VR LQEHRC  E C  PK +++  LEKHLRE+HK   CK+CL+ RKVF+MEQ  YT  +L QHI  G+P+LG  GHPRCEFCKTR+Y+  QLH HLVKDH+SCH+CEK GILHK +
Sbjct:    1 MAEEVLSVEHTHCVVCVEEIDGEERLHAFGPCNHLGVCSLCYLRLRQLMKEDTCVLCKTVMDRVIVCETENIRPFEEFQIWGDNAGPEYDWDDKSRIFLPKAYNKNFVRPLQEHRCGAENCPQPKCNNVFALEKHLREKHKSNLCKICLKNRKVFIMEQVRYTNLELQQHIVSGDPQLGQTGHPRCEFCKTRFYDAAQLHDHLVKDHYSCHICEKQGILHKYY 223          
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Match: A0A835Z051_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z051_9STRA)

HSP 1 Score: 252 bits (643), Expect = 9.330e-75
Identity = 112/211 (53.08%), Postives = 146/211 (69.19%), Query Frame = 1
Query:   37 CVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLKEMSCVLCKTEMDRVMVCDSESLRPFEDFHVWGDSAGPGYEWEEQSRMFLPKSYSQGYVRMLQEHRCHTEGCHHPKYDHMQGLEKHLREQHKLYFCKVCLRERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTRYYNNTQLHQHLVKDHFSCHLCEKMGILHKVH 669
            CV+C E  D EK L AVG CNH GVCSLCYLRLRKL+KE +CVLCKT M+++M+CD + L+PF DF +WG+ AGP Y W+E +R FLP+ Y   +V  L E  C    C          LE HLRE+H L  C+VCL+ +KVFL E   ++  +L+ HIRQG+P  GF GHPRCEFC++R+Y+ + L +HL K+H++CHLCE  G LHK +
Sbjct:   50 CVICCEMFDEEKRLAAVGACNHPGVCSLCYLRLRKLMKEYNCVLCKTPMEQLMICDVDGLQPFSDFAIWGNDAGPNYVWDETARAFLPRPYLDSFVSHLDEPACGVATCKSGLLPSQGALESHLRERHGLSLCRVCLKHKKVFLAEHRRFSAQELEHHIRQGDPTHGFFGHPRCEFCRSRFYDKSHLFEHLTKEHYTCHLCEAAGRLHKYY 260          
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Match: W4HDC7_9STRA (C2H2-type domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HDC7_9STRA)

HSP 1 Score: 194 bits (494), Expect = 4.470e-54
Identity = 96/210 (45.71%), Postives = 130/210 (61.90%), Query Frame = 1
Query:   16 GSTPPLHCVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLKEMSCVLCKTEMDRVMVCDSESLRPFEDFHVWGDSAGPGYEWEEQSRM-FLPKSYSQGYVRMLQEHRCHTEGCHHP-KYDHMQGLEKHLREQHKLYFCKVCLRERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTRYYNNTQLHQHLVKDHFSCHLC 639
             S+    CVVC   ID +     VG CNHLG CS+C LR+R+LLK   CV+CKTEMDRV +C ++    FE F  WGD+ GP + ++E S M FL ++YS   V+ L+   C    C     + +++ L++HL  +H L +C +CL  + VFL EQ  YT S L +H  QGNPE GF GHP+C FC + YY N +LH+HL K+HF C +C
Sbjct:    7 ASSASQACVVCCLNIDNKTRFQTVGSCNHLGCCSICALRMRQLLKSKHCVMCKTEMDRV-ICITDDAMTFESFQDWGDNIGPSHTFDEASGMYFLKENYSA--VQGLRSLTCSARACPDKHSFPNIKALKQHLNTKHALSYCDICLDHKHVFLEEQELYTASALKKHKTQGNPEHGFNGHPKCNFCASSYYGNNELHEHLRKNHFECEIC 213          
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Match: A0A6G0XFY2_9STRA (RING-type domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XFY2_9STRA)

HSP 1 Score: 194 bits (493), Expect = 5.620e-54
Identity = 88/202 (43.56%), Postives = 129/202 (63.86%), Query Frame = 1
Query:   37 CVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLKEMSCVLCKTEMDRVMVCDSESLRPFEDFHVWGDSAGPGYEWEEQSRMFLPKSYSQGYVRMLQEHRCHTEGC-HHPKYDHMQGLEKHLREQHKLYFCKVCLRERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTRYYNNTQLHQHLVKDHFSCHLC 639
            C+VC   ID +     VGPCNH+G CS+C LR+R+LLK   C++CKTEM+RV +C ++  + FE F  WGD+ GP + ++E S M+  K   +  V+ ++   C    C     + +++ L++HL ++H L FC +CL  + VFL EQ  YT   L +H  QGNPE GF GHP+C+FC+ R+Y N +LH+HL K+HF C +C
Sbjct:   14 CLVCCLSIDNKTRFQTVGPCNHVGCCSVCALRMRQLLKSKHCIMCKTEMERV-ICITDESQTFESFQDWGDNIGPTHAYDEASGMYFVKENYKA-VQAMRNLTCGARNCPDKSSFPNIKALKQHLNQKHGLAFCDICLEHKHVFLQEQELYTAGGLKKHKTQGNPEEGFNGHPKCDFCQNRFYGNNELHEHLRKNHFECEIC 213          
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Match: A0A024UQB2_9STRA (RING-type domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQB2_9STRA)

HSP 1 Score: 189 bits (479), Expect = 5.070e-52
Identity = 92/203 (45.32%), Postives = 125/203 (61.58%), Query Frame = 1
Query:   37 CVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLKEMSCVLCKTEMDRVMVCDSESLRPFEDFHVWGDSAGPGYEWEEQSRM-FLPKSYSQGYVRMLQEHRCHTEGCHHP-KYDHMQGLEKHLREQHKLYFCKVCLRERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTRYYNNTQLHQHLVKDHFSCHLC 639
            CVVC   ID +     VG CNH+G CS+C LR+R+LLK   CV+CKTEMDRV +C ++    FE F  WGD+ GP + ++E S M FL ++YS   V+ L+   C    C     + +++ L++HL  +H L FC  CL  +  FL EQ  YT   L +H  QGNPE GF GHP+C+FC + YY N +LH+HL K H+ C +C
Sbjct:   14 CVVCCLSIDNKTRFQTVGSCNHVGCCSICALRMRQLLKSKQCVMCKTEMDRV-ICITDDTMTFESFQDWGDNIGPTHIFDEGSGMYFLKENYSA--VQGLRSLTCSARNCPDKHSFPNIKALKQHLNTKHALSFCDFCLDHKNAFLQEQVLYTAGALKKHKSQGNPEEGFNGHPKCDFCSSSYYGNNELHEHLRKHHYECEIC 213          
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Match: A0A485L9N1_9STRA (Aste57867_18171 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9N1_9STRA)

HSP 1 Score: 185 bits (470), Expect = 9.570e-51
Identity = 84/202 (41.58%), Postives = 127/202 (62.87%), Query Frame = 1
Query:   37 CVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLKEMSCVLCKTEMDRVMVCDSESLRPFEDFHVWGDSAGPGYEWEEQSRMFLPKSYSQGYVRMLQEHRCHTEGC-HHPKYDHMQGLEKHLREQHKLYFCKVCLRERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTRYYNNTQLHQHLVKDHFSCHLC 639
            CVVC   ID +     +GPCNH+G CS+C LR+R+LLK   C++CK EM+RV +C +E  + FE F  WGD+ GP + ++E S +F  K   +  V+ ++   C    C     + +++ L++H  ++H L +C +CL  + VFL EQ  YT + L +H   GNP+ GF GHP+C+FC+ R+Y NT+L+ HL K+HF C +C
Sbjct:   14 CVVCCLSIDNKTRFQTIGPCNHVGCCSVCALRMRQLLKSKQCIMCKAEMERV-ICITEETQTFEGFQDWGDNIGPNHVFDEASGIFFVKENIKT-VQAMRNLTCGARNCPDKSSFPNIKALKQHTNQKHGLTYCDICLDHKHVFLQEQELYTAAGLKKHKTAGNPDEGFNGHPKCDFCQNRFYGNTELYDHLRKNHFECEIC 213          
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Match: A0A1V9ZM81_9STRA (RING-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZM81_9STRA)

HSP 1 Score: 182 bits (463), Expect = 9.710e-50
Identity = 82/203 (40.39%), Postives = 124/203 (61.08%), Query Frame = 1
Query:   37 CVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLKEMSCVLCKTEMDRVMVCDSESLRPFEDFHVWGDSAGPGYEWEEQSRMFLPKSYSQGYVRMLQEHRCHTEGCHHPK--YDHMQGLEKHLREQHKLYFCKVCLRERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTRYYNNTQLHQHLVKDHFSCHLC 639
            C+VC   ID       VGPCNH G CSLC LR+R++LK   C LCKT+M+RV +C  +  R FE F  WGD+ GP + ++E S M+  K   +  ++ ++   C    C+  K  + +   L+ HL  +H   FC +C+    +F+ EQT +++  L +H  +GNPE GF GHP+C+FC +R+Y+N +L++HL K+HF C +C
Sbjct:   13 CLVCCHSIDNVTRFQTVGPCNHHGCCSLCVLRMRQILKNTHCSLCKTDMNRV-ICVEDDTRTFESFQDWGDNIGPSHVYDEASAMYFLKDNYKA-IQAMRSFACPVSKCNDKKATFANYGALKNHLNSKHGQSFCDICVDHNNLFIQEQTLFSKEALKKHTNKGNPEQGFMGHPKCDFCASRFYSNNELYEHLRKNHFECEIC 213          
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Match: A0A4D9CU11_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU11_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.300e-49
Identity = 85/222 (38.29%), Postives = 136/222 (61.26%), Query Frame = 1
Query:    1 MEEKDGSTPPLHCVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLKEMSCVLCKTEMDRVMVC--DSESLRPFEDFHVWGDSAGPGYEWEEQSRMFLPKSYSQGYVRMLQEHRC---HTEGCHHPKYDHMQGLEKHLREQHKLYFCKVCLRERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTR-YYNNTQLHQHLVKDHFSCHLCEKM 648
            + E+ G      CV+C E  D  KH  AVG C+H G+C+LC++RLR L+++ +C LCK  ++ V V   D+ +++PF   ++WG  AGPGY ++E++ MF+P+++ +     +Q  RC    +  C +   D ++ L  HL++ H  Y C+VCL  +KVF+ EQT Y +  L  H+  G  + GF GHPRC+FC+ + +Y+ T L  HL   H+SC +CE++
Sbjct:  143 VRERGGEGLVASCVICAEMFDSGKHRPAVGACDHGGICALCFMRLRLLIEDRACPLCKASLEHVYVFNGDTTTIQPFASLNIWGTEAGPGYIYDERASMFMPRAFHRDVFAPMQGFRCSPAESNACRYEGKD-LRELRTHLQQAHAQYLCEVCLSHKKVFVGEQTRYVKKALAGHMEHGEADAGFSGHPRCKFCRNKPFYDLTALFHHLRSAHYSCDVCERL 363          
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Match: W2R785_PHYPN (C2H2-type domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2R785_PHYPN)

HSP 1 Score: 181 bits (460), Expect = 1.850e-49
Identity = 87/201 (43.28%), Postives = 124/201 (61.69%), Query Frame = 1
Query:   37 CVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLKEMSCVLCKTEMDRVMVCDSESLRPFEDFHVWGDSAGPGYEWEEQSRMFLPKSYSQGYVRMLQEHRCHTEGCHHPKYDHMQGLEKHLREQHKLYFCKVCLRERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTRYYNNTQLHQHLVKDHFSCHLC 639
            CV+C   ID     + VG CNH G CS+C LRLR+LL + SCV+CKT+M RV +C S   + FE F  WGD+ GP + ++E S MF  K      +R L++  C   G    K+  +  L  H+ + H + +C +CL  +KVFL E   +T+ QL +H  +GNP  GF GHPRC+FC +R+Y+ T+L++HL K+HF C +C
Sbjct:    8 CVLCCNAIDNASRFNTVGVCNHPGCCSICALRLRQLLGQTSCVMCKTDMPRV-ICISNEEQTFESFQDWGDNIGPSHVFDEASGMFFLKEDYTKRIRKLRDPLCKKCG---KKFATVNALRTHVLDVHGVQYCSICLENKKVFLEELELFTKDQLKKHNTKGNPHEGFMGHPRCDFCFSRFYSTTELYEHLRKNHFECDIC 204          
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Match: D0NB79_PHYIT (C2H2-type domain-containing protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NB79_PHYIT)

HSP 1 Score: 181 bits (460), Expect = 1.930e-49
Identity = 87/201 (43.28%), Postives = 123/201 (61.19%), Query Frame = 1
Query:   37 CVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLKEMSCVLCKTEMDRVMVCDSESLRPFEDFHVWGDSAGPGYEWEEQSRMFLPKSYSQGYVRMLQEHRCHTEGCHHPKYDHMQGLEKHLREQHKLYFCKVCLRERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTRYYNNTQLHQHLVKDHFSCHLC 639
            CV+C   ID     + VG CNH G CS+C LRLR+LL + SCV+CKT+M RV +C S   + FE F  WGD+ GP + +++ S MF  K      +R L++  C   G    K+  +  L  H+ + H L +C +CL  +KVFL E   +T+ QL +H  +GNP  GF GHPRC+FC +R+Y+ T+L+ HL K+HF C +C
Sbjct:    8 CVLCCNAIDNASRFNTVGVCNHSGCCSICALRLRQLLGQTSCVMCKTDMPRV-ICISNEDQSFESFQDWGDNIGPSHVFDDTSGMFFLKEDYTKRIRKLRDPLCKKCG---KKFATVSALRTHVLDAHGLQYCSICLENKKVFLEELELFTKDQLKKHNNKGNPHEGFMGHPRCDFCFSRFYSTTELYDHLRKNHFECDIC 204          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10546.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD86_9PHAE1.930e-10164.57RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z051_9STRA9.330e-7553.08RING-type domain-containing protein n=1 Tax=Tribon... [more]
W4HDC7_9STRA4.470e-5445.71C2H2-type domain-containing protein n=6 Tax=Aphano... [more]
A0A6G0XFY2_9STRA5.620e-5443.56RING-type domain-containing protein n=2 Tax=Aphano... [more]
A0A024UQB2_9STRA5.070e-5245.32RING-type domain-containing protein n=2 Tax=Aphano... [more]
A0A485L9N1_9STRA9.570e-5141.58Aste57867_18171 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZM81_9STRA9.710e-5040.39RING-type domain-containing protein n=1 Tax=Achlya... [more]
A0A4D9CU11_9STRA1.300e-4938.29Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
W2R785_PHYPN1.850e-4943.28C2H2-type domain-containing protein n=14 Tax=Phyto... [more]
D0NB79_PHYIT1.930e-4943.28C2H2-type domain-containing protein n=3 Tax=Phytop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10546contigC-tenellus_contig10546:170..4222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHL2
Preferred nameZNF598
PFAMszf-C3HC4_3
Model size675
Max annot lvl2759|Eukaryota
KEGG koko:K22381
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006325,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006513,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0030163,GO:0031323,GO:0031326,GO:0032268,GO:0032446,GO:0034248,GO:0034641,GO:0034645,GO:0036205,GO:0036211,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051276,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2000112,GO:2000765
Exons6
Evalue4.27e-56
EggNOG OGsCOG5236@1|root,KOG2231@2759|Eukaryota
EC2.3.2.27
Descriptionrescue of stalled ribosome
Cds size675
COG categoryJ
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10546.1.1prot_C-tenellus_contig10546.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10546 170..4222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.85529-CDS-C-tenellus_contig10546:169..3251680789136.85529-CDS-C-tenellus_contig10546:169..325Choristocarpus tenellus KU2346CDSC-tenellus_contig10546 170..325 -
1680789136.865769-CDS-C-tenellus_contig10546:887..9681680789136.865769-CDS-C-tenellus_contig10546:887..968Choristocarpus tenellus KU2346CDSC-tenellus_contig10546 888..968 -
1680789136.8773842-CDS-C-tenellus_contig10546:1268..13701680789136.8773842-CDS-C-tenellus_contig10546:1268..1370Choristocarpus tenellus KU2346CDSC-tenellus_contig10546 1269..1370 -
1680789136.8858712-CDS-C-tenellus_contig10546:3099..32171680789136.8858712-CDS-C-tenellus_contig10546:3099..3217Choristocarpus tenellus KU2346CDSC-tenellus_contig10546 3100..3217 -
1680789136.8940735-CDS-C-tenellus_contig10546:3628..37301680789136.8940735-CDS-C-tenellus_contig10546:3628..3730Choristocarpus tenellus KU2346CDSC-tenellus_contig10546 3629..3730 -
1680789136.9021392-CDS-C-tenellus_contig10546:4106..42221680789136.9021392-CDS-C-tenellus_contig10546:4106..4222Choristocarpus tenellus KU2346CDSC-tenellus_contig10546 4107..4222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10546.1.1

>prot_C-tenellus_contig10546.1.1 ID=prot_C-tenellus_contig10546.1.1|Name=mRNA_C-tenellus_contig10546.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=225bp
MEEKDGSTPPLHCVVCVEEIDCEKHLHAVGPCNHLGVCSLCYLRLRKLLK
EMSCVLCKTEMDRVMVCDSESLRPFEDFHVWGDSAGPGYEWEEQSRMFLP
KSYSQGYVRMLQEHRCHTEGCHHPKYDHMQGLEKHLREQHKLYFCKVCLR
ERKVFLMEQTTYTRSQLDQHIRQGNPELGFKGHPRCEFCKTRYYNNTQLH
QHLVKDHFSCHLCEKMGILHKVHD*
back to top

mRNA from alignment at C-tenellus_contig10546:170..4222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10546.1.1 ID=mRNA_C-tenellus_contig10546.1.1|Name=mRNA_C-tenellus_contig10546.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4053bp|location=Sequence derived from alignment at C-tenellus_contig10546:170..4222- (Choristocarpus tenellus KU2346)
ATGGAGGAAAAGGACGGGTCTACGCCTCCATTGCACTGTGTTGTGTGCGT GGAGGAGATAGATTGCGAGAAACATCTACACGCAGTCGGTCCTTGCAACC ATTTAGGCGTTTGCAGGTGAAGGTCGTAAAGCGTAGCAAGCCTTTTGTAT TTCATCCACGTTATGGCCATAAGGATAATTCAAGGTAATCATGTGTGCAA CTTGTAATGACGTGACGCTGGTCTAGCGGTCCCCATTTTCGCCCCTCGAG CGTGTGGTGGAACAGTCGGCCATGTCTCATCCTTAATTTTATACCTCACT CCAACATTGATTTTTTTCGTCTTCTTATTCGCTAATTTGCGGCTGCAACA TGATTCCTGTAAGTGTTGGCGACTGTTCGAGGAAACAACACTCAAGCACC AAATAAGTCCTGTTCATGCCTGGCGTACTTTGTGGACCATTACATGCCAT CTGCCTCCACTTTCCCTTCCTCCTTGTGTTGTATGGTGAAAGTCTCTGCT ATCTACGACTGCGAAAGCTGCTGAAAGAGATGAGTTGCGTCCTTTGCAAG ACGGAAATGGATCGTGTAATGGTTTGCGATTCGGAGAGTTTAAGGTAAGT CATCCCCACCACAGTGCACACAGTACGAATATACGCGTTGATTATTCAGA GATGCTCTTGATCGGCAGGGGAATGTCGCACGTAAATAAAGCGTAATTGA AGACAAAAATACAAGGAAATCAGATGAAGGACTGAGGCCTGTCAACTCCA ATTTATTTCAACCTCCCTCAACGGTTGCTAACACAAAGGGATGAAGTATG AACCTAGTTTTCTTTTATAGGTTCATCTTGCAGTAGGAAATATGAAGGGA GAATGTTCCACGACCCCTGGGACTTGAGTCTCTATCCTCCCAAGATCAGA TCTCGGTTGATCCTACTGTGCTTCGAATCTGCAAGGTAACTAGAAGACTC AATGGAGGAAGTCTTACAAGTCGAAGGCCCTGGTGCCCTGTGCAAATCCC TCCAGGCCTTTTGAGGACTTCCATGTCTGGGGTGACAGTGCTGGGCCGGG ATACGAATGGGAGGAACAGTCTCGTATGTTCTTGCCCAAGAGTTACAGCC AGGGGTATGTGAGGATGCTTCAAGTGAGTACTTAGCAACATTTGGTTTAC AACTATTGCACTGAACATCGTAATAGTAATAATAATACATATAAAACGCC GTCTGATATTTTGCAGGTATTGTCATGCGGAAAAAGAATCAACACATTAG ACAACACAACGAATACTACAAGGTCTGTACTGCTTACAACCAAGGCCTCC ATATATTGTACAACAGTTGATTTTACAATTAAATATACATATAATTAAAG ACATAGTTCTATATATATATATATATATATTAGTATACCATTGAATCTAT AATATAGTACCTGAAGTATCAATGAATAGTACGTGGAGTCTATACATAAC ATGCATCAAATCCAAACACTGCTCTTTGTTGAAGTCAACACACAACCAGG CTACCAGTTAGGAACACGGCCTTGGTCAATTTGCAAACTCCTTGCCCTTT GCTGTATCCACTATGCTGTGAGCTACGGAGCGTTTCTCCTTGCATCCCAG TGGAAAGGGGGTACTTCATATTGTTGAAATACTATCAAATATATATATAT ATATGTAGACCAGAAATGAATGTTTTATTTGCCTTGCCATTTTGTTGGTG CAAATATTCTATGAGGATCTTTTTCTGCACTTTTTTCTTGCCGAATCTCC ATTATTATTTCGCTCCAATATATTATGATACGATATTTACAGTATAATCC TGTCTTTTTTGTGTCTTTTTTGTCGTTGTTATCACCCTAACCCTACGATT ATCATAGCATGTACACTGTGTTAGTATAATTATGCTGTGGTAAGTACTTT TTGTCCAGTGTCTTTTTTTTTTATTCATCACACATCAGTGAAAAACATTT TAGTGACCCTGCAGACAAAGTGCTTGCCCAGTTCTCACACTTTAAGAACT AGTAAGGCTATTGAAGTGCAAGATCTGTGATGATCTGGGTCAGGTATAGT GCAAAAGTGGGGGTGGGGGGCGGAGACTGAGGCTGAAGTATAGTGTGGGA ACAAACAGCGACTCGTATAAGATAACCCCAACAAATCACCCCTGTTTATA TGACTCAGACACCCCACAACAGCAGGAGGATAAGGGAATAGTGGTGTAGG AGATGTAAGGCGATGTAATTGGCATAGGAAGAAGAGCATTCTTGAAGATA AGCCCAGAAGTCGCAACTGTTGCTGTTTGTTACGTCTTGCCGTAGTGACT GAGTCGCCTCCATTCTTAGTATATATATAATCAATCGTGGTGTAATGCTA TTAAGTTTGGATACTGTACTGTGTTATCACTCCTCTTAACATGGCACTCC AACAAATGTACGATTGGCATATGAAGTGTTAGGGTTAGGGTTAGTACGTT CTTTTTTGTTATTATATTTATTGAATTTGGAGGAAGGTGCACAATAAACG CCCTGAATTTTGGCAGAGAGTTTGCTGCTTGAAGCCTAAAGATGTTAAAT ATTCAGCCAAAGCTATGTTTTGCCGAAGATACAATTATTTCTATTTTTAG TATTATTTGGGTGGAAGGAAAAATAGGTTGGTATTATTATTTTATTTTTT CTGTTGAAGTTGTGATATTTTTCATGTACAAAGAGGCGTGTGTGCCTCAT CACGTGCGCCCACTTATGAAATAGACCAGCCTGCATTATACACCTTTCAA CATTTCTGCCATGCAAGGTTCAACTCTTCATCGACTGATAATGGCCACCA TTTACTTCTGCTATGTATAACCTGCCATGGTTTGATTATCGCTGGTGTGA AGGAGCATAGGTGTCACACTGAGGGATGCCACCACCCCAAGTATGACCAC ATGCAGGGCCTTGAGAAGCATCTTCGAGAACAACATAAGTTGTACTTTTG TAAGGTGAATATTCTGGTTGTGTGTCTTCTCCTTGGTGAATAGTCTTCTT TTGTTTCTGATTGGTTTAGACTGCTTTTTCGAGGTAACCAGGTAGAAGGT TGTGTTGGGCTAAGAATTATCGTTAAGGTTAAGGTTAGGATTTTTTACTG AAATAGTAAGTGTGCAAAGTACAGCACACTGTGGTAGTGATAGGTGAAAT AAACAAGAATATATATAATAATAATAATAGTGCAATAGTGATGATACTGT ATGATGTGTCTTGTGAGTACCTACAAGTGTTGGTATCATTCTTCTGTTGG ACAGGTGTGCCTCAGGGAGAGGAAGGTGTTTCTCATGGAACAGACAACAT ATACACGCTCACAGCTGGACCAGCACATTCGCCAGGTCGGTTTGGTTTGG CTTCGCAACCTTCTGCTAGATAGGATAGTCTAGCCATTGCCTGTACCTCT GCACCTCATGTGAAGGTACTTTTTGTGATTGCTATTCTACTTTATATTGA TATTATAAGTGGTGGCTAGGGTAAGGGTTGATTGAAGGAGGTTTGCATAA CATACTGTAGCTGTTGCCTGTACCCTTGCGCCTCATACAAAGCTATTTGT TTTTTATTGTTATATTGATAACTTCAGTTGATAACATTAGTTGATAACAT CAGTTGTGGCTGGTAGAAGGGTTAACTGAAGGAGGTTTACAAAAGATTTT TATTTTTATTTTTTGTTTCCAGTGGTCCCTCTTCCCCTCACCCCCTCCTC TGAGTGGTTGAAGTCGCCACAACTCTTCCACAAATATAAATTTTTATCCA TCAACGATCATCAACAATAGAATGCATATGCTAAAATGCCCCTGTCTTAC CTCATTCAGAACATTCATTGCTATTTTATTTTTAGGGGATATTAATTTTC TTTTTTTAGCACATGAAACGCTACTATCACGCTTATTTTTTGTGCAGGGC AACCCTGAGTTAGGATTCAAGGGGCATCCTCGGTGTGAGTTCTGCAAGAC ACGGTACTACAATAACACTCAGCTGCACCAGCACTTGGTCAAGGACCATT TCTCTTGTCATCTATGTGAAAAGATGGGCATACTTCATAAGGTGCATGAT TAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10546:170..4222-

>mRNA_C-tenellus_contig10546.1.1 ID=mRNA_C-tenellus_contig10546.1.1|Name=mRNA_C-tenellus_contig10546.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=675bp|location=Sequence derived from alignment at C-tenellus_contig10546:170..4222- (Choristocarpus tenellus KU2346)
ATGGAGGAAAAGGACGGGTCTACGCCTCCATTGCACTGTGTTGTGTGCGT
GGAGGAGATAGATTGCGAGAAACATCTACACGCAGTCGGTCCTTGCAACC
ATTTAGGCGTTTGCAGTCTCTGCTATCTACGACTGCGAAAGCTGCTGAAA
GAGATGAGTTGCGTCCTTTGCAAGACGGAAATGGATCGTGTAATGGTTTG
CGATTCGGAGAGTTTAAGGCCTTTTGAGGACTTCCATGTCTGGGGTGACA
GTGCTGGGCCGGGATACGAATGGGAGGAACAGTCTCGTATGTTCTTGCCC
AAGAGTTACAGCCAGGGGTATGTGAGGATGCTTCAAGAGCATAGGTGTCA
CACTGAGGGATGCCACCACCCCAAGTATGACCACATGCAGGGCCTTGAGA
AGCATCTTCGAGAACAACATAAGTTGTACTTTTGTAAGGTGTGCCTCAGG
GAGAGGAAGGTGTTTCTCATGGAACAGACAACATATACACGCTCACAGCT
GGACCAGCACATTCGCCAGGGCAACCCTGAGTTAGGATTCAAGGGGCATC
CTCGGTGTGAGTTCTGCAAGACACGGTACTACAATAACACTCAGCTGCAC
CAGCACTTGGTCAAGGACCATTTCTCTTGTCATCTATGTGAAAAGATGGG
CATACTTCATAAGGTGCATGATTAG
back to top