mRNA_C-tenellus_contig10544.1.5 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI) HSP 1 Score: 255 bits (652), Expect = 1.660e-83 Identity = 132/210 (62.86%), Postives = 158/210 (75.24%), Query Frame = 1 Query: 1 MEKTMAIATLLCASASAFMVPNPIARPTTSTGMAMSEAAAKSKSIPFMPQPPALDGTMAGDVGFDPFGFSSWIPLDFLREAELKHGRICQLAIVGWIATDLGFVLPGDMHQVSALEAHDAAVKTGAMAQIFMFITFLESVSGVAIIQMLQGSGRAPGEFGLDPQKVLQNP---KKKALFELREITHCRLAMLAFSGLVTQAALTGKGFPY 621 M T+A + + ASASAF+ P + R S+ MS A KSKS+PFMPQP LDGTMAGD GFDP GFS++IPLDFLREAELKHGRICQLA+VG+ ATDLGF LPG H V+++ AHDAAV TGAM QI ++++ E++S VA+IQML+GSGR PG+FG DP + P KKKA EL+EITHCRLAM AF G+VTQA LT GFPY Sbjct: 1 MMNTLACSLAVLASASAFVPPAQLPR-VASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPY 209
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN) HSP 1 Score: 226 bits (577), Expect = 3.060e-72 Identity = 116/199 (58.29%), Postives = 148/199 (74.37%), Query Frame = 1 Query: 31 LCASASAFMVPNPIARPTTSTGMAMSEAAAKSKSIPFMPQPPALDGTMAGDVGFDPFGFSSWIPLDFLREAELKHGRICQLAIVGWIATDLGFVLPGDMHQVSALEAHDAAVKTGAMAQIFMFITFLESVSGVAIIQML-QGSGRAPGEFGLDPQKVLQNPKKKALFELREITHCRLAMLAFSGLVTQAALTGKGFPYY 624 L ASASA + P P A+ + +AM+ A S+++PFM +P ALDGT AGDVGFDPFGF+S + +LREAE+KHGRIC LA G++ATDLGF LPGDMHQVS++ AHD A K GAM Q+F++++F E + + QM+ GS R PG++GLDP P+KKA +L+EITHCRLAM AFSG+VTQA LTGKGFPY+ Sbjct: 10 LAASASALVAPVPAAK----SAVAMNYQA--SEALPFMEKPEALDGTYAGDVGFDPFGFTSIFDVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVLAHDVACKYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTPEKKADMKLKEITHCRLAMFAFSGVVTQAVLTGKGFPYF 202
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA) HSP 1 Score: 226 bits (575), Expect = 8.550e-72 Identity = 120/212 (56.60%), Postives = 151/212 (71.23%), Query Frame = 1 Query: 1 MEKTMAIATLLCASASAFMVPNPIARPTTS-TGMAMSEA---AAKSKSIPFMPQPPALDGTMAGDVGFDPFGFSSWIPLDFLREAELKHGRICQLAIVGWIATDLGFVLPGDMHQVSALEAHDAAVKTGAMAQIFMFITFLESVSGVAIIQMLQGSGRAPGEFGLDPQKVLQNPKKKALFELREITHCRLAMLAFSGLVTQAALTGKGFPYY 624 M K +A+A L+ SA+AF P+ A + + +A S+ A KS SIPFMP+P LDGT+ GDVGFDP GFS+W+ LDFLREAE+KHGRIC LA+ GW+A DLG LPGD+H V +LEAHD AVK GAM+QI ++ + E++S V ++QML GSGR PG FG DP ++ KA EL EI + RLAMLAFSG+VTQAAL G FPY+ Sbjct: 3 MVKALAVAGLV-GSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPYF 212
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Match: A0A8J2SH85_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH85_9STRA) HSP 1 Score: 222 bits (565), Expect = 2.030e-70 Identity = 123/211 (58.29%), Postives = 149/211 (70.62%), Query Frame = 1 Query: 1 MEKTMAIATLLCASASAFMVPNPI-ARPTTSTGMAMSEAAAKSKSIPFMPQPPALDGT-MAGDVGFDPFGFSSWIPLDFLREAELKHGRICQLAIVGWIATDLGFVLPGDMHQVSALEAHDAAVKTGAMAQIFMFITFLESVSGVAIIQML-QGSGRAPGEFGLDPQKVLQNPKKKALFELREITHCRLAMLAFSGLVTQAALTGKGFPYY 624 M +T+A LL ASASA + P ARP T SEA +PFM +P +LD MAGDVGFDPFGFSS + +LREAE+KHGRIC LA G++ATDLGF LPGDMHQVS++EAHD A K GAM QIF++++F+E V + QM+ GS R PG+FGLDP P+K A +L+EITHCRLAM AFSG+VTQA LTGKGFPY+ Sbjct: 1 MARTVA---LLLASASALVPPAATPARPATRLAYTASEA------LPFMERPASLDELEMAGDVGFDPFGFSSIFNVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVEAHDVACKYGAMQQIFLWLSFIEVVHSFGVAQMMWMGSDRQPGDFGLDPLDFCSTPEKAADMKLKEITHCRLAMFAFSGVVTQAVLTGKGFPYF 202
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Match: A0A4D9CSZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSZ5_9STRA) HSP 1 Score: 211 bits (537), Expect = 3.610e-66 Identity = 113/198 (57.07%), Postives = 145/198 (73.23%), Query Frame = 1 Query: 31 LCASASAFMVPNPIARPTTSTGMAMSEAAAKSKSIPFMPQPPALDGTMAGDVGFDPFGFSSWIPLDFLREAELKHGRICQLAIVGWIATDLGFV-LPGDMHQVSALEAHDAAVKTGAMAQIFMFITFLESVSGVAIIQMLQGSGRAPGEFGLDPQKVLQNPKKKALFELREITHCRLAMLAFSGLVTQAALTGKGFPY 621 L +A+AF+ P+ TT T A+S A KSKSIPF+P+PPALDGT AGDVGFDP GF+SW+PL +L+EAE+KH RI LA +GWI D FV LPGD+H VS+L AHD AVK+GA+AQI ++ + E++S +AI QML+GSGR PG+F DP ++ + +L E+ + RLAMLAFSG+VTQAALTG FPY Sbjct: 9 LIGAAAAFV---PLMPATTRTRGAVSMMAEKSKSIPFLPRPPALDGTAAGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVAD--FVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 201
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Match: A0A7S2S869_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S869_9STRA) HSP 1 Score: 210 bits (535), Expect = 1.070e-65 Identity = 102/175 (58.29%), Postives = 129/175 (73.71%), Query Frame = 1 Query: 100 AMSEAAAKSKSIPFMPQPPALDGTMAGDVGFDPFGFSSWIPLDFLREAELKHGRICQLAIVGWIATDLGFVLPGDMHQVSALEAHDAAVKTGAMAQIFMFITFLESVSGVAIIQMLQGSGRAPGEFGLDPQKVLQNPKKKALFELREITHCRLAMLAFSGLVTQAALTGKGFPYY 624 AM AAKS +IPF+P+P LDG++ GDVGFDP G S W+PLD+LRE+ELKHGRIC LA+ G+ ATDLGF LPG+ V++ +AH+ AV G M + I LE +SG+AI + L GSGRA G++GLDP K+ P K A +++EITH RLAMLAFSG+VTQA L KGFPY+ Sbjct: 40 AMKMMAAKSAAIPFLPKPAELDGSLIGDVGFDPLGVSDWMPLDYLRESELKHGRICMLAVTGFAATDLGFKLPGEQFNVASADAHNMAVSAGYMTVMGCAIFALECISGLAIQESLAGSGRAAGDYGLDPLKLSDKPDKMADMQMKEITHARLAMLAFSGMVTQAVLFDKGFPYF 214
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Match: W7T6P5_9STRA (Light-harvesting protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6P5_9STRA) HSP 1 Score: 211 bits (538), Expect = 2.240e-65 Identity = 115/210 (54.76%), Postives = 149/210 (70.95%), Query Frame = 1 Query: 1 MEKTMAIATLLC--ASASAFMVPNPIARPTTSTGMAMSEAAAKSKSIPFMPQPPALDGTMAGDVGFDPFGFSSWIPLDFLREAELKHGRICQLAIVGWIATDLGFV-LPGDMHQVSALEAHDAAVKTGAMAQIFMFITFLESVSGVAIIQMLQGSGRAPGEFGLDPQKVLQNPKKKALFELREITHCRLAMLAFSGLVTQAALTGKGFPY 621 + K M + + C +A+AF+ P P+ TT A+S A KSKSIPF+P+PPALDGT GDVGFDP GF+SW+PL +L+EAE+KH RI LA +GWI D FV LPGD+H VS+L AHD AVK+GA+AQI ++ + E++S VAI QML+GSGR PG+F DP ++ + +L E+ + RLAMLAFSG+VTQAALTG FPY Sbjct: 66 LTKIMKLLSFACLIGAAAAFVPPMPV---TTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVAD--FVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 270
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Match: F0YEX6_AURAN (Putative plastid light harvesting protein isoform 51 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEX6_AURAN) HSP 1 Score: 204 bits (518), Expect = 2.500e-63 Identity = 105/201 (52.24%), Postives = 141/201 (70.15%), Query Frame = 1 Query: 22 ATLLCASASAFMVPNPIARPTTSTGMAMSEAAAKSKSIPFMPQPPALDGTMAGDVGFDPFGFSSWIPLDFLREAELKHGRICQLAIVGWIATDLGFVLPGDMHQVSALEAHDAAVKTGAMAQIFMFITFLESVSGVAIIQMLQGSGRAPGEFGLDPQKVLQNPKKKALFELREITHCRLAMLAFSGLVTQAALTGKGFPYY 624 AT CASA + P+++ T+ T M KS S+PF+ P L G + G+ GFDP G S W+P+D+LRE+ELKHGR+C LA +G++ATD+GFVLPG+MHQVS++ AHD AV G+M QI +FI E + +AI++ML GSGR PG+FG DP ++ + +LREI + RLAMLAF+G+VTQA LTGKGFPY+ Sbjct: 10 ATATCASA----LVAPVSQTTSLTSMHE-----KSASMPFLEASPNLKGYIGGEKGFDPLGLSYWVPMDWLRESELKHGRVCMLATLGFVATDMGFVLPGEMHQVSSIGAHDVAVAQGSMTQITIFIAICECIGYLAILEMLDGSGRKPGDFGFDPLQIGGGDDPE--MQLREIENGRLAMLAFAGIVTQAVLTGKGFPYF 199
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Match: A0A7S2C651_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C651_9STRA) HSP 1 Score: 202 bits (515), Expect = 1.260e-62 Identity = 109/209 (52.15%), Postives = 143/209 (68.42%), Query Frame = 1 Query: 1 MEKTMAIATLLCASASAFMVPNPIARPTTSTGMAMSEAAAKSKSIPFMPQPPALDGTMAGDVGFDPFGFSSW-IPLDFLREAELKHGRICQLAIVGWIATDLGFVLPGDMHQVSALEAHDAAVKTGAMAQIFMFITFLESVSGVAIIQMLQGSGRAPGEFGLDPQKVLQNPKKKALFELREITHCRLAMLAFSGLVTQAALTGKGFPYY 624 M +T+ L+ +SA AFM +P A P T MA KS +IPF+P P +G + G+VGFDP S W +P+D+LREAELKHGR+C LA+ G+ ATD GF +PG+ +QV++++AHD AV +G M + I +E++S VAI +ML GSGR G+FG DP KV + KK +L+EITH RLAMLAFSG+VTQA LT KGFPYY Sbjct: 15 MVRTLLALALMVSSAGAFMSASPRAAPRTVVSMAE-----KSPAIPFLPAPANCEGYV-GNVGFDPLRVSEWGLPVDYLREAELKHGRVCMLAVTGFAATDCGFRIPGEQYQVASIDAHDVAVSSGLMTVGGIAILMIEALSFVAIQEMLAGSGRMAGDFGFDPLKVKADAKKLETMQLKEITHSRLAMLAFSGMVTQAVLTEKGFPYY 217
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Match: A0A7S2CMP0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMP0_9STRA) HSP 1 Score: 202 bits (515), Expect = 3.030e-62 Identity = 102/169 (60.36%), Postives = 129/169 (76.33%), Query Frame = 1 Query: 118 AKSKSIPFMPQPPALDGTMAGDVGFDPFGFSSW-IPLDFLREAELKHGRICQLAIVGWIATDLGFVLPGDMHQVSALEAHDAAVKTGAMAQIFMFITFLESVSGVAIIQMLQGSGRAPGEFGLDPQKVLQNPKKKALFELREITHCRLAMLAFSGLVTQAALTGKGFPY 621 AKS S+PF+P+P L+G G+V FDP G SSW IP+D+LREAELKHGR+C LAI G+IATD+GF LPG+ + V + AHD AVK+GAM +F+ I+ +E+VS +AI +ML GSGR PG+F LDP ++ +P+K L+EITH RLAMLAF GLVTQA LT KGFPY Sbjct: 77 AKSLSMPFLPKPEGLEG-YPGNVEFDPMGISSWGIPVDYLREAELKHGRVCMLAITGFIATDIGFRLPGEQYDVPSYLAHDVAVKSGAMTFMFIAISLIETVSFLAIQEMLAGSGRKPGDFNLDPLQLASSPEKLETMLLKEITHARLAMLAFGGLVTQAVLTEKGFPY 244 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10544.1.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10544.1.5 >prot_C-tenellus_contig10544.1.5 ID=prot_C-tenellus_contig10544.1.5|Name=mRNA_C-tenellus_contig10544.1.5|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=209bp MEKTMAIATLLCASASAFMVPNPIARPTTSTGMAMSEAAAKSKSIPFMPQback to top mRNA from alignment at C-tenellus_contig10544:616..3542- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10544.1.5 ID=mRNA_C-tenellus_contig10544.1.5|Name=mRNA_C-tenellus_contig10544.1.5|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2927bp|location=Sequence derived from alignment at C-tenellus_contig10544:616..3542- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10544:616..3542- >mRNA_C-tenellus_contig10544.1.5 ID=mRNA_C-tenellus_contig10544.1.5|Name=mRNA_C-tenellus_contig10544.1.5|organism=Choristocarpus tenellus KU2346|type=CDS|length=627bp|location=Sequence derived from alignment at C-tenellus_contig10544:616..3542- (Choristocarpus tenellus KU2346)back to top |