mRNA_C-tenellus_contig10543.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10543.1.1
Unique NamemRNA_C-tenellus_contig10543.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Match: D8LGI9_ECTSI (Possible NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGI9_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 2.620e-30
Identity = 60/82 (73.17%), Postives = 73/82 (89.02%), Query Frame = 3 
Query:  525 LCVLC-LTEMLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHHVQDLVKTCMPKSLLEYKHPRSRM 767
            LC+L  L EMLGNFPTPT+DFLIRWHQKPM L F++ +GQLNP +LE+TGAPYKYGIH ++DLVKTCMP++LL YKHPR+R+
Sbjct:  356 LCILKNLAEMLGNFPTPTMDFLIRWHQKPMGLQFLTPEGQLNPQLLERTGAPYKYGIHCLEDLVKTCMPQALLNYKHPRARL 437
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BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Match: A0A835Z4V9_9STRA (NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.960e-27
Identity = 56/82 (68.29%), Postives = 70/82 (85.37%), Query Frame = 3 
Query:  525 LCVLC-LTEMLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHHVQDLVKTCMPKSLLEYKHPRSRM 767
            LC+L  L E+LGNFPTPTIDFLIRWHQ+ M + +++ DGQLNPLVL+ TGAPYKYGIH  +D+VKTC+P+SLL YKHP S++
Sbjct:  358 LCILKNLAELLGNFPTPTIDFLIRWHQQFMGVTYLNADGQLNPLVLQGTGAPYKYGIHRAEDVVKTCLPQSLLNYKHPLSKL 439
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BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Match: A0A3R7CY47_9STRA (Octopine_DH domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7CY47_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.190e-24
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 3 
Query:  525 LCVLC-LTEMLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHHVQDLVKTCMPKSLLEYKHPRSRM 767
            LC+L  + EMLGNFPTP IDF+IRWHQ+ M++ F+++D QLNP  L +TGAP KYGIH + DLV T +P+ +  Y+HPRSRM
Sbjct:   76 LCILKNMAEMLGNFPTPRIDFMIRWHQQFMQVQFLNDDNQLNPRELWRTGAPNKYGIHDIADLVDTSLPREMHGYRHPRSRM 157
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BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Match: A0A4D9D401_9STRA (Octopine_DH domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D401_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.390e-23
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 3 
Query:  540 LTEMLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHHVQDLVKTCMPKSLLEYKHPRSRM 767
            L E+LGNFPTP IDF+IRWHQ  ME +++  D QLNP +L +TGAP KYGIH V+++V+TC+P+ LL Y+HPR+RM
Sbjct:  358 LVELLGNFPTPAIDFMIRWHQTFMEKDYLLSDNQLNPRLLHETGAPCKYGIHRVEEIVETCLPRELLGYRHPRARM 433
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BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Match: A0A067CFG8_SAPPC (Octopine_DH domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CFG8_SAPPC)

HSP 1 Score: 111 bits (278), Expect = 1.950e-22
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 3 
Query:  525 LCVLC-LTEMLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHHVQDLVKTCMPKSLLEYKHPRSRM 767
            LC+L  + EMLGNFPTP IDF+IRWHQ+ M + F++ED QLNP  + +TGAP KYGIH ++DLV+T +P+ +  YKHPRSRM
Sbjct:  355 LCILKNMAEMLGNFPTPRIDFMIRWHQQFMGVQFLNEDSQLNPREIWRTGAPNKYGIHDIEDLVETSLPREMHGYKHPRSRM 436
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BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Match: A0A8K1FGU6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGU6_PYTOL)

HSP 1 Score: 110 bits (275), Expect = 4.760e-22
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 3 
Query:  525 LCVLC-LTEMLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHHVQDLVKTCMPKSLLEYKHPRSRM 767
            LC+L  + EMLGNFPTP IDF+IRWHQ+ M + F++ DGQLNP  L +TGAP KYGIH +++LV T +PK +  Y+HPRSRM
Sbjct:  356 LCILKNMAEMLGNFPTPRIDFMIRWHQQYMNVTFLNADGQLNPQELWRTGAPNKYGIHSLEELVATSLPKEMHGYRHPRSRM 437
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BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Match: F0WNE8_9STRA (Uncharacterized protein AlNc14C170G7975 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WNE8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.240e-22
Identity = 46/82 (56.10%), Postives = 64/82 (78.05%), Query Frame = 3 
Query:  525 LCVL-CLTEMLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHHVQDLVKTCMPKSLLEYKHPRSRM 767
            LC+L C+ E+ GNFPTP +DF+IRWHQ+ M++ F++ DGQLN   + +TG PYKYGIH + DLV T +P+ + EY+HPRSR+
Sbjct:  354 LCILKCIAELSGNFPTPRLDFMIRWHQQYMKVEFLNADGQLNAQEMWRTGTPYKYGIHDLHDLVATSLPQEMREYRHPRSRI 435
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BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Match: A0A024TX41_9STRA (Rhodanese domain-containing protein n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024TX41_9STRA)

HSP 1 Score: 109 bits (273), Expect = 8.460e-22
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 3 
Query:  525 LCVLC-LTEMLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHHVQDLVKTCMPKSLLEYKHPRSRM 767
            LC+L  + EMLGNFPTP IDF+IRWHQ+ M++ F+++D QLNP  L +TGAP KYGIH + DLV T +P+ +  Y+HPRSRM
Sbjct:  355 LCILKNMAEMLGNFPTPRIDFMIRWHQQFMQVQFLNDDNQLNPRELWRTGAPNKYGIHDIADLVDTSLPREMHGYRHPRSRM 436
[Close]
BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Match: A0A024GBF8_9STRA (Octopine_DH domain-containing protein n=4 Tax=Albugo candida TaxID=65357 RepID=A0A024GBF8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 9.860e-22
Identity = 45/82 (54.88%), Postives = 64/82 (78.05%), Query Frame = 3 
Query:  525 LCVL-CLTEMLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHHVQDLVKTCMPKSLLEYKHPRSRM 767
            LC+L C+ E+ GNFPTP +DF+IRWHQ+ M + F++ DGQLN   + +TG PYKYGIH ++DLV T +P+ + +Y+HPRSR+
Sbjct:  343 LCILKCIAELSGNFPTPRLDFMIRWHQQYMNVEFLNADGQLNAQEMWRTGTPYKYGIHDLRDLVSTSLPQEMRQYRHPRSRI 424
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BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Match: M4BL49_HYAAE (Octopine_DH domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BL49_HYAAE)

HSP 1 Score: 109 bits (272), Expect = 1.110e-21
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 3 
Query:  525 LCVLC-LTEMLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHHVQDLVKTCMPKSLLEYKHPRSRM 767
            LC+L  + E+LGNFPTP IDF+IRWHQ+ M + F++ DGQLN   L +TGAP KYGIH ++DLV T +PK +  Y+HPRSRM
Sbjct:  353 LCILKNMAELLGNFPTPRIDFMIRWHQRHMGVEFLTPDGQLNARELWRTGAPNKYGIHSLEDLVSTSLPKEMQHYRHPRSRM 434
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10543.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LGI9_ECTSI2.620e-3073.17Possible NAD/NADP octopine/nopaline dehydrogenase ... [more]
A0A835Z4V9_9STRA1.960e-2768.29NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=T... [more]
A0A3R7CY47_9STRA3.190e-2459.76Octopine_DH domain-containing protein n=1 Tax=Apha... [more]
A0A4D9D401_9STRA2.390e-2361.84Octopine_DH domain-containing protein n=3 Tax=Mono... [more]
A0A067CFG8_SAPPC1.950e-2260.98Octopine_DH domain-containing protein n=4 Tax=Sapr... [more]
A0A8K1FGU6_PYTOL4.760e-2260.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WNE8_9STRA6.240e-2256.10Uncharacterized protein AlNc14C170G7975 n=1 Tax=Al... [more]
A0A024TX41_9STRA8.460e-2259.76Rhodanese domain-containing protein n=11 Tax=Aphan... [more]
A0A024GBF8_9STRA9.860e-2254.88Octopine_DH domain-containing protein n=4 Tax=Albu... [more]
M4BL49_HYAAE1.110e-2159.76Octopine_DH domain-containing protein n=1 Tax=Hyal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10543contigC-tenellus_contig10543:2092..5082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGI9
PFAMsApbA,Octopine_DH
Model size2221
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.12e-34
EggNOG OGs2948S@1|root,2RB5S@2759|Eukaryota
DescriptionNAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
Cds size222
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.7095678-UTR-C-tenellus_contig10543:2091..35421680789136.7095678-UTR-C-tenellus_contig10543:2091..3542Choristocarpus tenellus KU2346UTRC-tenellus_contig10543 2092..3542 -
1680789136.7433665-UTR-C-tenellus_contig10543:4534..50821680789136.7433665-UTR-C-tenellus_contig10543:4534..5082Choristocarpus tenellus KU2346UTRC-tenellus_contig10543 4535..5082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.7222393-CDS-C-tenellus_contig10543:3542..36081680789136.7222393-CDS-C-tenellus_contig10543:3542..3608Choristocarpus tenellus KU2346CDSC-tenellus_contig10543 3543..3608 -
1680789136.7309294-CDS-C-tenellus_contig10543:4378..45341680789136.7309294-CDS-C-tenellus_contig10543:4378..4534Choristocarpus tenellus KU2346CDSC-tenellus_contig10543 4379..4534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10543.1.1prot_C-tenellus_contig10543.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10543 3543..4534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10543.1.1

>prot_C-tenellus_contig10543.1.1 ID=prot_C-tenellus_contig10543.1.1|Name=mRNA_C-tenellus_contig10543.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=74bp
MLGNFPTPTIDFLIRWHQKPMELNFISEDGQLNPLVLEQTGAPYKYGIHH
VQDLVKTCMPKSLLEYKHPRSRM*
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mRNA from alignment at C-tenellus_contig10543:2092..5082-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10543.1.1 ID=mRNA_C-tenellus_contig10543.1.1|Name=mRNA_C-tenellus_contig10543.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2991bp|location=Sequence derived from alignment at C-tenellus_contig10543:2092..5082- (Choristocarpus tenellus KU2346)
GGTGATAAGACTTGTTAGTTGGGTATGTCTCATGATGCTCCCACCTTTGG
GGAACAAGGGTAAAAGTCTAGTTAATGATGTGTGATGATCTGTGGATGAC
ATAAGCCATTCCCAGTGTAAGGAGAAACTGCGATGACATATGGATCAAGT
CAACTGCGCATGCTGGGAACCATTGCGCTTCAATGGCAGCACCTAGCCCA
CAAATTGACACTGAAATTGTGTGAAGAGGTTTAGATGCGTTAGATTGGTT
GGATTTCACCAATAGCATCTGTTTATATGGAGATGATTGGACCCCTCCAA
CATCGCCTTCCTTCCCCTTGACAGACCCCTAAGAATTGATTAAGGAGAAG
AAAGACTTCATTTACGATGATGACCTAGCTCAAAGAATAGTGCAACAATA
TGTCATACCTCTCCTTATACCCACCGGACATTTTCCCCCATCCCCCACTG
CTATTGTCCAACCTCACCAAAAACTTGATGTTGTTCTCCTCCAACTATGA
TCATTTCATGGTGTATTTCTCCCTCTATGTGTACTGTGCCTTACAGAAAT
GCTGGGAAACTTCCCAACCCCTACCATAGACTTCCTCATCAGATGGCACC
AGAAGCCTATGGAACTCAACTTCATCTCAGAAGATGGGCAGCTTAATCCT
CTGGTGCTGGAGCAGACAGGGGCACCCTATAAGTATGGGATCCATCATGT
TCAGGTCAGGCCTTCTCCTTCACGTTTTTTTTTGTTTTATGTCTAACCTA
TTGGTTTCTGCCCTCACCCCACAATTCTGTTGAGCTACACTAAATGGACT
ATTTAATTAATAAGTTTTATGAACACTTTTTTACAGGTGCAGAGTAATTT
GTTGCTGTCTGAGATAGATGGATGATGGCTGACATGCTGGCTATTATGCA
TAATGACCTACTGGTGTCATGACCAATTGCGTTTTGTTTGAGAGAGGGGT
GAGATACTTGCAACTTTGCATGAAAAATCTATGTGGTGATACTACTTGTT
CACAGAGGGATGCATTTTACAGCCCACATATCGTATTGGCTTAATATTAA
TATATGCAAATAGCCAGTGCCTCACCAAGGTAGTGGAAACCCTTTATGTT
CAAATGTTTCACAGAGTCAGAGCACTATTGTAGCACAGCACACTCGAATG
TACACAGAGGTGCTCATGCTCAAGCTTCAGGAATGATTTTGTCGTGTTTG
CACTGTACTTGGTCCATATCAAGACCCTCACAATGTGCCTATATCTTATC
ACTTGTGTTGAGCTTTTCCAGATGGGTTAGTTGAAGGAAGAACATACATT
GGTAAAAATGTGTATATTTCTATATATGCGCATGCTACATACACATTATT
ATTTTATGTTTTCACTCAATTCCGGTGCAGGGGCAAACAGACTGGTGAAG
TTAGGCACAAGGGGTTGGTTCTCAGCTTGACATCTTCCCCTGGTCCCCTC
ACACACACCCTTTTCCATGCACAGGACCTTGTCAAGACATGCATGCCCAA
GTCTCTGTTAGAGTACAAACACCCACGATCACGAATGTAGTGAGGAGATG
ATGAATGATGAATGGTTTCTTTCCAGAGTTGTGAGAAAACTGATCATACG
AGGGCAGGGCATGTGCAAGGGTGAAGGTGAAGTTGAAAGCGTTGGGAGTA
CAGTGCTCACCTTCTGCTCTACAGGGCCTGTTGAAGAATGGGGCAAACTG
TATAGATGATAACTTTACAGGTCTTTTTTGGATGCCACTATTAATTTGTT
ATTTTACTACTATTATACAAGTGCTGTGGTTGTAAAGATAGCTGCTACTA
GCATTTTTTCTTTGGGTAGGGGTGTCAGTTTTTGGAAGGAAAGGAGGGGT
TGACAAAGGGAAGAGACGTTGGTAATGTGGTGTTCTACATCCCATGTAAC
AGAGTAAGGAGGGGCAAGGGGGGAGAGGACAATATAGGCTTAAGTGTCTT
AAAGCACTGTGATGGTCCGTGTTTCATAAGAGAAGCTCACTTAGGGTTAG
GTTGAGGTGACATAAGCCGCATGTACATGGGTTTTTTACTATTTTTCAGG
AGTTTCTCTTCTTTTTTTTTCCTCATTGTACTTTAGTAGTCCATTGCAAT
GGAAGTTTTGAATGTTGGTTAAGAGTTACTACCTACCTCCTTTTAGCTCA
TTTCCTCCTGCTACAGAGGCTTCTGAAGCATAGTGGAGGAAAGAGAGGAT
GTAGTTGTTCAAAGATAGACTACTCCCGCCAATACATAGATACAGTTCGA
CGTCATCACTTCATGACAACTGTCCTCTTCCCCTAGTATGTGGCCATACA
GCCACAGCCACACTTACAGTATAGGGAACGGTACATTTTTTTCTTATTGC
TCTTATTTCACTCTGTATGTTGTTTTTGTTGATGAATTGGTAGTCTGAAT
CTGGTATGCACTTGAGCTGTACCATGCATGTTACAGTTGCCTTCCGTTTC
AACCCTACCTTCAGCATGCTGCTTTAAATTGTTCTTCAATGAACTGTGCT
GTCCCCCCCAAGAAGGTGCATCACCTCTTCATGCCCTCTTGATGACCAGG
TTGAAGTACAGGACGAAGTGGGTTGGAGGATGAACATGCCTCATGACACC
TAGCTGTTCAAAACTCTCTACTGGTACTGATCCTACAGGGATACTGCATG
GTAGAATTGAAGACCACAAATAGTACGTTACATGTGTGTAGTAGTACACA
TGACAAAACCCCATACATCAATACGGTATGCTGTTATTGCAGCAGTCAAG
CTCCCTCACCTAGCAGGCATTTTTTAAACCTGACACCAGACAATTTTCAA
AAAAAGAAGTATTGAAATCCAGAGTGCGTGTGACACTGTGCACAGTTCAA
TCCAAGGTGGTGTACCTCCATTCCATTCAGTTAGGTATTGCTCATCACAT
TGCTTCCCCATTGACTAGCATAGTAGTCATGATCCTTTCTGTGAAATGTG
GTGAGAGGTGTTGGGGTTGGTTGGACCAGGTGTGGGGCTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10543:2092..5082-

>mRNA_C-tenellus_contig10543.1.1 ID=mRNA_C-tenellus_contig10543.1.1|Name=mRNA_C-tenellus_contig10543.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=222bp|location=Sequence derived from alignment at C-tenellus_contig10543:2092..5082- (Choristocarpus tenellus KU2346)
ATGCTGGGAAACTTCCCAACCCCTACCATAGACTTCCTCATCAGATGGCA
CCAGAAGCCTATGGAACTCAACTTCATCTCAGAAGATGGGCAGCTTAATC
CTCTGGTGCTGGAGCAGACAGGGGCACCCTATAAGTATGGGATCCATCAT
GTTCAGGACCTTGTCAAGACATGCATGCCCAAGTCTCTGTTAGAGTACAA
ACACCCACGATCACGAATGTAG
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