mRNA_C-tenellus_contig10520.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10520.1.1
Unique NamemRNA_C-tenellus_contig10520.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Match: A0A6A5AK20_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AK20_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.910e-12
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 2
Query:  176 KPVLSDQQKVNRVGFVISHMHREASGVFVDDLYG*V---EKWFFILKDRQGVYLHPAEDPPKPPLSQNKSYSTKVVFLEAVSRPR-KLSNRM*FNGKIGIPPIVDTMVAQHSSKH 508
            KP+L++     R+   +S +   + G   D++Y  V   EKWF +   ++  Y +  ED PK  L ++K Y TKV+FL AV+RPR     +  F+GKIGI P V+T++AQ  S++
Sbjct:   15 KPLLTEANTKTRMEHALSFLRPSSKGTIFDNMYSFVHVDEKWFNLTTVKKAFYAYEDEDLPKRRL-KSKRYITKVMFLAAVTRPRYDHHKKCIFDGKIGIWPFVETVLAQRLSRN 128          
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Match: W4G4M0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4M0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.720e-11
Identity = 40/113 (35.40%), Postives = 68/113 (60.18%), Query Frame = 2
Query:  176 KPVLSDQQKVNRVGFVISHMHREASGVFVDDLYG*V---EKWFFILKDRQGVYLHPAEDPPKPPLSQNKSYSTKVVFLEAVSRPRKLSNRM*F-NGKIGIPPIVDTMVAQHSS 502
            KP L+D  K+NR+   ++ +   ++    D +   V   EKWF++   ++  Y +  E+ PK  L ++K Y TKV+FL +V+RPR   ++  F +GKIGI P V+T++A+ +S
Sbjct:  145 KPYLTDANKINRMKHALAFLQPSSNETIFDSMNSYVHVDEKWFYLTTVKKCFYAYDDEELPKRQL-KSKRYITKVMFLASVARPRYDPHKKGFFDGKIGIWPFVETVIAKRNS 256          
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Match: A0A6A4E0R9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4E0R9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.170e-10
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 2
Query:  176 KPVLSDQQKVNRVGF---VISHMHREASGVFVD--DLYG*VEKWFFILKDRQGVYLHPAEDPPKPPLSQNKSYSTKVVFLEAVSRPR-KLSNRM*FNGKIGIPPIVDTMVAQHSSKH 508
            KP+L+ +    R  F   ++  +  E    FVD  ++    EKWF++ ++R   YL   E  P+  +++NK++ TKV+FL AV+RPR     RM F+GK+G+ P+V+T +A  +SK+
Sbjct:  126 KPLLTPEHMAKRRQFARSLVKKLPGERGYEFVDMQNVVHVDEKWFYVHRNRNTYYLTRGETAPRA-VTKNKNHRTKVMFLVAVARPRYDAQQRMTFDGKVGLWPVVETKLAVRNSKN 241          
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Match: A0A6A4ZT35_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZT35_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.780e-10
Identity = 39/113 (34.51%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  176 KPVLSDQQKVNRVGFVISHMHREASGVFVDDLYG*V---EKWFFILKDRQGVYLHPAEDPPKPPLSQNKSYSTKVVFLEAVSRPRKLSNRM*F-NGKIGIPPIVDTMVAQHSS 502
            KP L+D  K+ R+   ++ +   ++    D +   V   EKWF++   ++  Y +  E+ PK  L ++K + TKV+FL AV+RPR   ++  F +GKIGI P V+T++A+ +S
Sbjct:   15 KPYLTDANKITRMKHALAFLQPSSNETIFDSMNSYVHVDEKWFYLTTVKKCFYAYDDEELPKRQL-KSKRFITKVMFLAAVARPRYDPHKKGFFDGKIGIWPFVETVIAKRNS 126          
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Match: A0A024UBD8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UBD8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.410e-9
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  173 IKPVLSDQQKVNRVGFVISHMHREASGVFVDDLYG*V---EKWFFILKDRQGVYLHPAEDPPKPPLSQNKSYSTKVVFLEAVSRPRKLSNRM*FNGKIGIPPIVDTMVAQHSS 502
            +KP+L+D  K  R  + +S  H     +  D +   V   EKWF + + +   +L P ED P    ++NK Y   V+FL A++RPR +   + F+GK+GI P V+ +VAQ  S
Sbjct:   33 LKPMLTDSNKEARKRYALSFTHVVDGTITFDSMMDRVFLDEKWFNLRQVKNKYFLAPWEDAPHQS-TKNKRYIPSVMFLTAIARPRMVDG-VYFDGKLGIWPFVEVVVAQRRS 143          
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Match: A0A485KSH5_9STRA (Aste57867_11065 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSH5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.420e-9
Identity = 45/125 (36.00%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  173 IKPVLSDQQKVNRVGFVISHMHREASGVFV---------DDLYG*V---EKWFFILKDRQGVYLHPAEDPPKPPLSQNKSYSTKVVFLEAVSRPR-KLSNRM*FNGKIGIPPIVDTMVAQHSSKH 508
            +KP+LSD+ K+ R+ F  S++ REA               D++  V   EKWF    DR+ VYL P E+P K    + K +  KV+FL  V+ PR  +     F+GKIG+ PIV    A  +S++
Sbjct:  128 LKPLLSDEHKLERITFCKSYVRREAPDTIALLAGQEFEFFDMWDAVHLDEKWFNADIDRRKVYLVPGEEP-KRRACKFKRFLPKVMFLAVVAHPRFNIEGECEFDGKIGLWPIVKYAPAIRNSRN 251          
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Match: W2NW41_PHYPR (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NW41_PHYPR)

HSP 1 Score: 65.1 bits (157), Expect = 6.490e-9
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  173 IKPVLSDQQKVNRVGFVISHMHREASG--VFVD--DLYG*VEKWFFILKDRQGVYLHPAEDPPKPPLSQNKSYSTKVVFLEAVSRPRKLSNR-M*FNGKIGIPPIVDTMVAQHSSKH 508
            +KP L+++ ++ RV F +SH  R+  G  VF D  D+    EKWF    DR+  YL   E+ P     Q+K + +K +F+ AV+RPR  ++R   F+GKIGI    +   A+ +SK+
Sbjct:  129 VKPALTEENRLARVQFALSHTTRKRGGEMVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEPVRQ-RQSKRFISKTMFIAAVARPRYDAHRKQAFDGKIGIWAFAEEYEAKRTSKN 244          
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Match: W2QAD0_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QAD0_PHYPN)

HSP 1 Score: 64.3 bits (155), Expect = 1.010e-8
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  173 IKPVLSDQQKVNRVGFVISHMHREASG--VFVD--DLYG*VEKWFFILKDRQGVYLHPAEDPPKPPLSQNKSYSTKVVFLEAVSRPRKLSNR-M*FNGKIGIPPIVDTMVAQHSSKH 508
            +KP L+++ ++ RV F +SH  R+  G  VF D  D+    EKWF    DR+  YL   E+ P     Q+K + +K +F+ AV+RPR  ++R   F+GKIGI    +   A+ +SK+
Sbjct:   33 VKPALTEENRLARVQFELSHTTRKRGGEVVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEPVRQ-RQSKRFISKTMFIAAVARPRYDAHRKQAFDGKIGIWAFAEEYEAKRTSKN 148          
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Match: UPI001C268D4E (uncharacterized protein LOC121801146 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C268D4E)

HSP 1 Score: 63.9 bits (154), Expect = 1.260e-8
Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  173 IKPVLSDQQKVNRVGFVISHM-----------HREASGVFVDDLYG*VEKWFFILKDRQGVYLHPAEDPPKPPLSQNKSYSTKVVFLEAVSRPRKLSN-RM*FNGKIGIPPIVDTMVAQHSSKH 508
            +KP L++  K+ R+ +  +H+           H   + V +D      EKWF++ K     YL P ED P     ++K +STKV+F+ AVSRP   S+  + F+GKIG+ P ++ ++A+ +SK+
Sbjct:   39 VKPTLTEANKIARMKWCPAHIQPTLAEGKLLYHSMHNIVHID------EKWFYMTKASDRYYLLPDEDEPYRSY-KSKRFSTKVMFMAAVSRPLIGSDGEIIFDGKIGLFPFIEEVLAKRNSKN 155          
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Match: A0A397E5D7_9STRA (HTH_Tnp_Tc3_2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E5D7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.300e-8
Identity = 47/140 (33.57%), Postives = 66/140 (47.14%), Query Frame = 2
Query:  173 IKPVLSDQQKVNRVGFVISHMHR-------EASGVFV----DDLYG*V----------------EKWFFILKDRQGVYLHPAEDPPKPPLSQNKSYSTKVVFLEAVSRPR-KLSNRM*FNGKIGIPPIVDTMVAQHSSKH 508
            +KP+L+D  +  RVGF  SH+ R       EA+        D  YG                  EKWF   KDR+ VYL   E P K    ++K +  KV+FL AV+RP+      + F+GKIG+ P +    A  SS++
Sbjct:  127 LKPMLTDANRAERVGFCRSHVRRIAATSLAEAAATVTAFGGDSGYGSALVELPFSDMIDVVHLDEKWFNADKDRRKVYLTKGETP-KGRACKSKRFIPKVMFLAAVARPQFDADGNLVFDGKIGMWPFITMTPAARSSRN 265          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10520.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6A5AK20_9STRA5.910e-1237.39Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4G4M0_9STRA4.720e-1135.40Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4E0R9_9STRA1.170e-1035.90Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A4ZT35_9STRA1.780e-1034.51Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UBD8_9STRA1.410e-935.40Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KSH5_9STRA6.420e-936.00Aste57867_11065 protein n=1 Tax=Aphanomyces stella... [more]
W2NW41_PHYPR6.490e-936.75HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
W2QAD0_PHYPN1.010e-836.75Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
UPI001C268D4E1.260e-833.06uncharacterized protein LOC121801146 n=1 Tax=Salvi... [more]
A0A397E5D7_9STRA7.300e-833.57HTH_Tnp_Tc3_2 domain-containing protein n=2 Tax=Ap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10520contigC-tenellus_contig10520:836..1434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size600
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.1755188-UTR-C-tenellus_contig10520:835..11071680789136.1755188-UTR-C-tenellus_contig10520:835..1107Choristocarpus tenellus KU2346UTRC-tenellus_contig10520 836..1107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.18616-CDS-C-tenellus_contig10520:1107..14341680789136.18616-CDS-C-tenellus_contig10520:1107..1434Choristocarpus tenellus KU2346CDSC-tenellus_contig10520 1108..1434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10520.1.1prot_C-tenellus_contig10520.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10520 1108..1434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10520.1.1

>prot_C-tenellus_contig10520.1.1 ID=prot_C-tenellus_contig10520.1.1|Name=mRNA_C-tenellus_contig10520.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=109bp
MARSRSGFSSSKIGKVYTYTPLRTPPNPHCHRIRVTVRRWCSLKLCPALG
SSPTGCDSMGKSGFHQSWTLWSLSTPANIPKVNKVLVPATVDRKRYKKLM
IEDVIPPIK
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mRNA from alignment at C-tenellus_contig10520:836..1434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10520.1.1 ID=mRNA_C-tenellus_contig10520.1.1|Name=mRNA_C-tenellus_contig10520.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=599bp|location=Sequence derived from alignment at C-tenellus_contig10520:836..1434+ (Choristocarpus tenellus KU2346)
ACCTTGTACAACACTGCAAGGGGCGATGTGGCTGCTGTACAAGTATCCTT TGACATTTGGGATTCCCATCAGTAAATCACACATACTTACACAAATGGGC GGCCAAAAATGGGGTCTTCCTTGCCCGTTGTGAGATGTGTGGAAGCGCAA GAAGGTGAAGGTCAAGTGGTGGATTAAGCCAGTCCTCTCAGACCAGCAAA AAGTCAACAGGGTGGGTTTTGTCATCAGCCACATGCACAGGGAGGCAAGT GGGGTATTTGTGGACGATCTATATGGCTAGGTCGAGAAGTGGTTTTTCAT CCTCAAAGATAGGCAAGGTGTATACTTACACCCCGCTGAGGACCCCCCCA AACCCCCACTGTCACAGAATAAGAGTTACAGTACGAAGGTGGTGTTCCTT GAAGCTGTGTCCCGCCCTAGGAAGCTCTCCAACAGGATGTGATTCAATGG GAAAATCGGGATTCCACCAATCGTGGACACTATGGTCGCTCAGCACTCCA GCAAACATCCCCAAAGTCAACAAGGTGCTTGTGCCAGCCACGGTGGACAG GAAGAGGTATAAGAAGCTCATGATCGAGGATGTCATCCCGCCAATCAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10520:836..1434+

>mRNA_C-tenellus_contig10520.1.1 ID=mRNA_C-tenellus_contig10520.1.1|Name=mRNA_C-tenellus_contig10520.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=327bp|location=Sequence derived from alignment at C-tenellus_contig10520:836..1434+ (Choristocarpus tenellus KU2346)
ATGGCTAGGTCGAGAAGTGGTTTTTCATCCTCAAAGATAGGCAAGGTGTA
TACTTACACCCCGCTGAGGACCCCCCCAAACCCCCACTGTCACAGAATAA
GAGTTACAGTACGAAGGTGGTGTTCCTTGAAGCTGTGTCCCGCCCTAGGA
AGCTCTCCAACAGGATGTGATTCAATGGGAAAATCGGGATTCCACCAATC
GTGGACACTATGGTCGCTCAGCACTCCAGCAAACATCCCCAAAGTCAACA
AGGTGCTTGTGCCAGCCACGGTGGACAGGAAGAGGTATAAGAAGCTCATG
ATCGAGGATGTCATCCCGCCAATCAAG
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