mRNA_C-tenellus_contig10519.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10519.1.1
Unique NamemRNA_C-tenellus_contig10519.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10519.1.1 vs. uniprot
Match: D7FHZ2_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ2_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.130e-6
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 QETMIGHPLYVPHCARKRLLVLAELIHRQMRLEEENNKTVIDV 129
            +E ++GHP+Y P  ARKRLL LAELI  QMR E+E    V D+
Sbjct:  625 EEHLVGHPIYAPRGARKRLLALAELIRLQMRAEKEKVTAVEDI 667
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10519.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHZ2_ECTSI2.130e-655.81C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10519contigC-tenellus_contig10519:410..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size120
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.0771043-UTR-C-tenellus_contig10519:409..4181680789136.0771043-UTR-C-tenellus_contig10519:409..418Choristocarpus tenellus KU2346UTRC-tenellus_contig10519 410..418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.087182-CDS-C-tenellus_contig10519:418..5381680789136.087182-CDS-C-tenellus_contig10519:418..538Choristocarpus tenellus KU2346CDSC-tenellus_contig10519 419..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10519.1.1prot_C-tenellus_contig10519.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10519 419..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10519.1.1

>prot_C-tenellus_contig10519.1.1 ID=prot_C-tenellus_contig10519.1.1|Name=mRNA_C-tenellus_contig10519.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=40bp
MIGHPLYVPHCARKRLLVLAELIHRQMRLEEENNKTVIDV
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mRNA from alignment at C-tenellus_contig10519:410..538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10519.1.1 ID=mRNA_C-tenellus_contig10519.1.1|Name=mRNA_C-tenellus_contig10519.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=129bp|location=Sequence derived from alignment at C-tenellus_contig10519:410..538+ (Choristocarpus tenellus KU2346)
CAGGAAACAATGATTGGGCATCCGCTATATGTTCCCCATTGTGCACGCAA
ACGCCTGCTGGTGCTGGCAGAGTTAATTCACCGTCAAATGAGGCTCGAGG
AGGAAAATAACAAGACGGTCATTGATGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig10519:410..538+

>mRNA_C-tenellus_contig10519.1.1 ID=mRNA_C-tenellus_contig10519.1.1|Name=mRNA_C-tenellus_contig10519.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=120bp|location=Sequence derived from alignment at C-tenellus_contig10519:410..538+ (Choristocarpus tenellus KU2346)
ATGATTGGGCATCCGCTATATGTTCCCCATTGTGCACGCAAACGCCTGCT
GGTGCTGGCAGAGTTAATTCACCGTCAAATGAGGCTCGAGGAGGAAAATA
ACAAGACGGTCATTGATGTG
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