mRNA_C-tenellus_contig10516.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10516.1.1
Unique NamemRNA_C-tenellus_contig10516.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Match: A0A6H5KYW9_9PHAE (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.600e-27
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    4 IAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALIDREYLERDNSKPNHYCYLA 204
            IAIEAAIVRIMKARKTI H QLVAEVLSQLSFFRPNPKVIK+RIH LI+REYLERD S+ NHY YLA
Sbjct:  680 IAIEAAIVRIMKARKTIGHPQLVAEVLSQLSFFRPNPKVIKARIHGLIEREYLERDASQANHYNYLA 746
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BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Match: A0A7S2V5E8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5E8_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.230e-26
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 SIAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALIDREYLERDNSKPNHYCYLA 204
            SIAIEAAIVRIMKARKT+ HQQLVAEVLSQL+FFRPNPKVIK RI ALIDREYLERD    N Y YLA
Sbjct:  226 SIAIEAAIVRIMKARKTLPHQQLVAEVLSQLAFFRPNPKVIKRRIEALIDREYLERDLETANSYRYLA 293
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BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Match: D7FJN2_ECTSI (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN2_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.240e-26
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    4 IAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALIDREYLERDNSKPNHYCYLA 204
            IAIEAAIVRIMKARKTI H QLVAEVLSQLSFF PNPKVIK+RIH LI+REYLERD S+ NHY YLA
Sbjct:  415 IAIEAAIVRIMKARKTIGHPQLVAEVLSQLSFFSPNPKVIKARIHGLIEREYLERDASQVNHYNYLA 481
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BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Match: A0A7S3HJE5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJE5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.920e-26
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 SIAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALIDREYLERDNSKPNHYCYLA 204
            SIAIEAAIVRIMKAR T++HQQLVAEVLSQLSFFRP+PKVIK RI ALIDREYLERD    N Y Y+A
Sbjct:  181 SIAIEAAIVRIMKARLTLSHQQLVAEVLSQLSFFRPDPKVIKRRIEALIDREYLERDQENQNTYKYMA 248
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BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Match: A0A7S4DET0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DET0_HETAK)

HSP 1 Score: 103 bits (257), Expect = 8.680e-26
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 SIAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALIDREYLERDNSKPNHYCYLA 204
            S+AIEAA+VRIMKARK ++HQQL+AEVLSQL+FFRP+P+VIK R+ ALIDREYLERD   PN Y YLA
Sbjct:  170 SVAIEAAVVRIMKARKALSHQQLLAEVLSQLAFFRPSPRVIKRRVEALIDREYLERDPEAPNAYRYLA 237
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BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Match: A0A7R9Z9G2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9G2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.200e-25
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 SIAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALIDREYLERDNSKPNHYCYLA 204
            SIAIEAAIVRIMKARKT+ HQQL+AEVLSQL+FF+PNP+VIK RI ALIDREYLER     N Y YLA
Sbjct:  139 SIAIEAAIVRIMKARKTLQHQQLIAEVLSQLAFFKPNPRVIKKRIEALIDREYLERSADNSNVYNYLA 206
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BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Match: A0A7S3JSF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.490e-25
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 SIAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALIDREYLERDNSKPNHYCYLA 204
            ++AIEAA+VRIMKARKT+ HQQL+AEVLSQLSFFRPNPKVIK RI ALIDREYLERD   PN Y YLA
Sbjct:  694 TVAIEAAVVRIMKARKTLDHQQLLAEVLSQLSFFRPNPKVIKRRIEALIDREYLERDPDLPNAYRYLA 761
[Close]
BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Match: A0A7S2BNG9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNG9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.880e-25
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 SIAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALIDREYLERDNSKPNHYCYLA 204
            S+AIEAA+VRIMKARK ++HQQL+AEVLSQL+FF+PNPKVIK RI ALIDREYLERD   PN Y YLA
Sbjct:  291 SVAIEAAVVRIMKARKQLSHQQLLAEVLSQLAFFKPNPKVIKRRIEALIDREYLERDPDVPNTYKYLA 358
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BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.030e-25
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 SIAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALIDREYLERDNSKPNHYCYLA 204
            +IAIEAAIVRIMKARK + HQQLVAEVLSQLSFFRPNPKVIK RI ALI+REYLERD   PN Y YLA
Sbjct:  680 TIAIEAAIVRIMKARKALGHQQLVAEVLSQLSFFRPNPKVIKRRIEALIEREYLERDPDTPNTYRYLA 747
[Close]
BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Match: A0A4D9DID3_9STRA (CULLIN_2 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DID3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.780e-25
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 SIAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALIDREYLERDNSKPNHYCYLA 204
            SIAIEAAIVRIMKARK + HQQL +EVLSQL+FFRPNPKV+K RIHALIDREYLERD + PN Y YLA
Sbjct:  692 SIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERDEN-PNQYKYLA 758
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10516.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYW9_9PHAE2.600e-2786.57CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2V5E8_9STRA1.230e-2683.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FJN2_ECTSI1.240e-2685.07CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S3HJE5_9STRA3.920e-2680.88Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4DET0_HETAK8.680e-2675.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9Z9G2_9STRA1.200e-2577.94Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3JSF7_9STRA1.490e-2580.88Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2BNG9_9STRA1.880e-2577.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YLK2_9STRA2.030e-2582.35Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A4D9DID3_9STRA2.780e-2580.88CULLIN_2 domain-containing protein n=3 Tax=Monodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10516contigC-tenellus_contig10516:49..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FJN2
PFAMsCullin,Cullin_Nedd8,zf-C3HC4_3
Model size207
Max annot lvl2759|Eukaryota
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.04e-27
EggNOG OGsCOG5647@1|root,KOG2166@2759|Eukaryota
Descriptionubiquitin protein ligase binding
Cds size207
COG categoryO
BRITEko00000,ko00001,ko00002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.0280447-CDS-C-tenellus_contig10516:48..1651680789136.0280447-CDS-C-tenellus_contig10516:48..165Choristocarpus tenellus KU2346CDSC-tenellus_contig10516 49..165 +
1680789136.0402846-CDS-C-tenellus_contig10516:643..7331680789136.0402846-CDS-C-tenellus_contig10516:643..733Choristocarpus tenellus KU2346CDSC-tenellus_contig10516 644..733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10516.1.1prot_C-tenellus_contig10516.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10516 49..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10516.1.1

>prot_C-tenellus_contig10516.1.1 ID=prot_C-tenellus_contig10516.1.1|Name=mRNA_C-tenellus_contig10516.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=69bp
SIAIEAAIVRIMKARKTIAHQQLVAEVLSQLSFFRPNPKVIKSRIHALID
REYLERDNSKPNHYCYLA*
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mRNA from alignment at C-tenellus_contig10516:49..733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10516.1.1 ID=mRNA_C-tenellus_contig10516.1.1|Name=mRNA_C-tenellus_contig10516.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=685bp|location=Sequence derived from alignment at C-tenellus_contig10516:49..733+ (Choristocarpus tenellus KU2346)
AGCATTGCGATTGAGGCAGCCATTGTGCGTATCATGAAGGCTCGGAAGAC
AATTGCCCATCAGCAACTTGTTGCTGAGGTTTTGAGTCAGCTCTCGTTCT
TCCGTCCTAACCCAAAGGTGGGCAAGACTTGTATGGGATTAGTACCTGTT
GGGGCCCTGTGCAACTTTTTCCATTGTGTATGTACGTATAGCGGTGCTGT
ATATGATCCTGTGTACTACATGGTTTAGTTTATTTTGGTAAAAGGCTGAA
TTTGTTGGCCTCTTTCCTTTGTACCTCCCAACTCCATGCCCCAGCTTCCT
GTATTGAAGGTGTGTTGTTTACACTATTTTGTAGTTGACACTATTTGCTG
TTCATGACTCAACAGTTGTAAGTGTAGGCACAGGTAATGGTGTTAGAGAA
ATTGTATTTTTTTTTGTCTAATTAGTCGACACTCAGAATTTTCTGGCAGA
GGAGTTCCATCCCGTGCCTGAAGCTGCTCCGGCTTCCCAAAAGAATCGAA
ATTGGGCAATGAATCCCAGACATTATATTATCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCAACCTTACAACTGTTGATTGCCTGTGTGCAGGTGAT
CAAAAGCCGTATCCATGCACTTATTGATCGTGAATACTTGGAGAGAGATA
ATTCAAAACCAAACCACTACTGCTATTTGGCATAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10516:49..733+

>mRNA_C-tenellus_contig10516.1.1 ID=mRNA_C-tenellus_contig10516.1.1|Name=mRNA_C-tenellus_contig10516.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=207bp|location=Sequence derived from alignment at C-tenellus_contig10516:49..733+ (Choristocarpus tenellus KU2346)
AGCATTGCGATTGAGGCAGCCATTGTGCGTATCATGAAGGCTCGGAAGAC
AATTGCCCATCAGCAACTTGTTGCTGAGGTTTTGAGTCAGCTCTCGTTCT
TCCGTCCTAACCCAAAGGTGATCAAAAGCCGTATCCATGCACTTATTGAT
CGTGAATACTTGGAGAGAGATAATTCAAAACCAAACCACTACTGCTATTT
GGCATAG
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