mRNA_C-tenellus_contig10515.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10515.2.1
Unique NamemRNA_C-tenellus_contig10515.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10515.2.1 vs. uniprot
Match: A0A6H5JC72_9PHAE (GLOBIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC72_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 4.080e-82
Identity = 160/294 (54.42%), Postives = 200/294 (68.03%), Query Frame = 1 
Query:    1 QEAEQEFSAIGEAIVSHLHPSELPLTRALALDAAQTFVQRVLSCRSRDKQSSKLRRRAFKVLLAHLVPFMLDCLQTPTDIQLPAPPPSKGTEQMQGPGQGTEASPGASCDGSGAKGDVTDLVGGEGELVVLHFYQQ---YQLKVAALDTMGRLLIVLRALFRPPLSNRVQLAVAPLLDAEEVVLRDKAANVLGKLSLCGKDLPEWTNIAISVSLEAHSLLQEAWPDE--GQVPPSKLEDILQENRLLPPLHKASLQGDPEGHMRAVGRRFPSLCKLLTALLVDPLPRPGDSEVG 867
            +E E  F  IG+AI+ HL PSE P TRALALD AQTFVQ V+S RS+DK+SSK+RR+AFK LLA L+P MLDCL++P      + P  +      G G G E   G    G   +G +    G  GE+VVLH+YQQ   Y LKVA L+TM R L +LRALF+PP S RVQ  VAPLLDA E VLR+KAA VLGKLSLCG+D   W NIAI VSLE+H+LLQ+AWPDE  GQ+P +++E I+ E+ LLPP+     +GD E H+ ++GRRFP+LCKLL  L+    P+  + E G
Sbjct:  855 EETEASFGNIGDAILLHLRPSEPPTTRALALDVAQTFVQNVVSERSKDKRSSKIRRKAFKELLARLIPLMLDCLKSPAGSSNSSFPREENASL--GGGGGQERGEGFGDGGDAEEGGLAAGKGLGGEVVVLHYYQQHHQYLLKVAVLETMNRFLTILRALFKPPQSTRVQKVVAPLLDASEEVLREKAAAVLGKLSLCGRDTLTWANIAIKVSLESHNLLQDAWPDEIVGQIPSAQVETIMGEHPLLPPIQDTFNKGDVEAHVLSIGRRFPALCKLLATLVTASPPKSQEPEEG 1146
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BLAST of mRNA_C-tenellus_contig10515.2.1 vs. uniprot
Match: D7FHK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK6_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 9.860e-81
Identity = 158/296 (53.38%), Postives = 193/296 (65.20%), Query Frame = 1 
Query:    1 QEAEQEFSAIGEAIVSHLHPSELPLTRALALDAAQTFVQRVLSCRSRDKQSSKLRRRAFKVLLAHLVPFMLDCLQTPTDIQLPAPP----PSKGTEQMQGPGQGTEASPGASCDGSGAKGDVTDLVGGEGELVVLHFYQQ---YQLKVAALDTMGRLLIVLRALFRPPLSNRVQLAVAPLLDAEEVVLRDKAANVLGKLSLCGKDLPEWTNIAISVSLEAHSLLQEAWPDE--GQVPPSKLEDILQENRLLPPLHKASLQGDPEGHMRAVGRRFPSLCKLLTALLVDPLPRPGDSE 861
            +E E  F  IGEAI+ HL PSE P TRALALD AQTFVQ VLS RS+DK+SSK+RRRAFK LLAHL+P MLDCL++P      + P     S G                                G  GE++VLH+YQQ   Y LKVA L+TM R L VLRALFRPP S RVQ  VAPLLDA E VL++KAA VLGKLSLCG+D  +W NIAI VSLE+H+LLQ+AWPDE  GQVP +++E I+ E+ LLPP+     +GD E ++ ++GRRFP+LCKLL  L+    P+  + E
Sbjct:   16 EETEASFGNIGEAILFHLKPSEPPTTRALALDVAQTFVQNVLSERSKDKRSSKIRRRAFKELLAHLIPLMLDCLKSPEGSSSSSSPRDENASLGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGLGGEVIVLHYYQQHHQYLLKVAVLETMNRFLTVLRALFRPPQSTRVQKVVAPLLDASEEVLKEKAAAVLGKLSLCGRDTLKWANIAIKVSLESHNLLQDAWPDEIVGQVPSAQVETIMGEHPLLPPIQDTFNKGDVEAYVLSIGRRFPALCKLLATLVTASPPKSQEPE 311
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10515.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC72_9PHAE4.080e-8254.42GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FHK6_ECTSI9.860e-8153.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10515contigC-tenellus_contig10515:2362..5341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size900
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-24_004200.1
Cds size900
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.9453044-CDS-C-tenellus_contig10515:2361..27191680789135.9453044-CDS-C-tenellus_contig10515:2361..2719Choristocarpus tenellus KU2346CDSC-tenellus_contig10515 2362..2719 +
1680789135.9612772-CDS-C-tenellus_contig10515:2842..29301680789135.9612772-CDS-C-tenellus_contig10515:2842..2930Choristocarpus tenellus KU2346CDSC-tenellus_contig10515 2843..2930 +
1680789135.9720714-CDS-C-tenellus_contig10515:3616..37431680789135.9720714-CDS-C-tenellus_contig10515:3616..3743Choristocarpus tenellus KU2346CDSC-tenellus_contig10515 3617..3743 +
1680789135.9875844-CDS-C-tenellus_contig10515:4564..46661680789135.9875844-CDS-C-tenellus_contig10515:4564..4666Choristocarpus tenellus KU2346CDSC-tenellus_contig10515 4565..4666 +
1680789135.9978895-CDS-C-tenellus_contig10515:5116..53411680789135.9978895-CDS-C-tenellus_contig10515:5116..5341Choristocarpus tenellus KU2346CDSC-tenellus_contig10515 5117..5341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10515.2.1prot_C-tenellus_contig10515.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10515 2362..5341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10515.2.1

>prot_C-tenellus_contig10515.2.1 ID=prot_C-tenellus_contig10515.2.1|Name=mRNA_C-tenellus_contig10515.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=300bp
QEAEQEFSAIGEAIVSHLHPSELPLTRALALDAAQTFVQRVLSCRSRDKQ
SSKLRRRAFKVLLAHLVPFMLDCLQTPTDIQLPAPPPSKGTEQMQGPGQG
TEASPGASCDGSGAKGDVTDLVGGEGELVVLHFYQQYQLKVAALDTMGRL
LIVLRALFRPPLSNRVQLAVAPLLDAEEVVLRDKAANVLGKLSLCGKDLP
EWTNIAISVSLEAHSLLQEAWPDEGQVPPSKLEDILQENRLLPPLHKASL
QGDPEGHMRAVGRRFPSLCKLLTALLVDPLPRPGDSEVGHGTSGGVLVI*
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mRNA from alignment at C-tenellus_contig10515:2362..5341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10515.2.1 ID=mRNA_C-tenellus_contig10515.2.1|Name=mRNA_C-tenellus_contig10515.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2980bp|location=Sequence derived from alignment at C-tenellus_contig10515:2362..5341+ (Choristocarpus tenellus KU2346)
CAAGAAGCAGAGCAGGAGTTCTCCGCCATTGGGGAGGCGATTGTGTCTCA
TCTGCATCCCTCAGAGCTGCCTCTCACAAGGGCGCTTGCCCTGGATGCGG
CGCAGACTTTTGTCCAGCGTGTCCTCAGCTGCCGTTCCCGAGACAAGCAA
TCCTCCAAGCTTAGAAGGCGGGCCTTCAAGGTGCTCCTTGCACACCTTGT
GCCCTTCATGCTTGACTGCCTGCAGACACCTACTGACATTCAACTCCCAG
CCCCCCCACCATCTAAAGGAACAGAGCAAATGCAGGGGCCAGGACAAGGG
ACGGAAGCTAGTCCTGGGGCGAGTTGTGATGGCTCTGGAGCCAAAGGGGA
TGTTACTGGTGGAAAACAGGGAGCGGGGGAGGGGCAGGGGCAATCGTCAA
AGCCGCAGGAGAAAGGATCTTTGTCGGATGGATCATTGTTGAATAGCAGC
TGCCCAAGGACAGAGACTGAAATGGGGGCAGATCTTGTGGGGGGGGAGGG
GGAGCTAGTGGTGCTTCACTTCTATCAGCAGTATCAGCTCAAAGTGGCTG
CTCTCGATACGATGGGACGGTAAGAGTGTATGTTATGTTGTGTGTGTTGT
GTATGTAGGGCTCTATCAGCTATGGATTTTTTTTTCCATTCAGGCTTGAG
ATTTTTTTTGTTCAATATTATTGGAGGGGTGAATGAAAGGGGTATGTATA
TACCTTGGGTGGGATTGAAGGGAGGGAGGGAGCGAGGTTTTGATTGCAAG
AGAAGATGTAAGAGCATTTCTTCTTTTTTTTAGGTCTGACTTGACCGGCA
GTGCAGAGTGAAAAGGTTGTCTTGTGACAATGCATGTTTTGTGCGTTAGG
GTTAGAGTTGCACATGTCAGTCCCGATCAAGTACCGTAATTGGTTAGGGT
TAGGGTTAGGGTTACACGTGTCAGTCCTGATCAAATACCATAATTGCCTG
TTTGGTATCTCAACTCAGGAACAAGCGAAGAAGGCCCTGTTTTCACCCTC
TGGAGTCCTGCTGAGTTATCGATACACTACTGATACACTGGGTGTGCTTA
TTTATGCTTGCTGACATGTGTGCTACATGGATGCACTGGGTGTTGCACGC
TAACACTGTCCTGAGATGATTTGATTTGATTTGATTTGATTTGATAATGA
CGGCATCCTGTGAGTTTTTTTCATTTTAATCTGTCCACGAACATCACCTT
CATTGCATCCATTGCCGTACCTTTATTCTTTTTGTGTATCTTCTTTGTGG
TAAAGGCTGTTGATAGTTCTTAGGGCGCTATTCCGACCACCTCTATCCAA
TCGGGTTCAGTTAGCGGTGGCTCCTCTTCTCGATGCGGAGGAGGTGGTGC
TCAGGGACAAGGCGGCCAATGTGCTGGGAAAGGTCAGTTGATGTGTACTC
TTTTTTTTGGTGGTGCTTTGTCGCGATTTAGGGTTAGGGTTAGGGTTGGG
GTTGGGGTATTGTAGGCGGTACTGTTGGGTTGAGCGTCTTGTTTTTTTTC
TTCAGGTAGGAATCTCTGGTGTGATCTTGATGGAGTTGTAGAGTTGTAGA
CAGTAGATTTCTTTTTTTATGCATTCTTTGTGTTGGGTTCTACATCTAGG
TTGAGATTTATGTTGGTCTCTAAGATTTGACCTTTTGGCATGTCGTCTAC
CCCCTCATCCCTATTTTAAGAAGGCGTTATTATTATGATTTTAGTTGTAA
CCAGTATTACTATTATCTGTACAGTACTGTACTTAGTCTTGACAAGAAAA
CTCCAAGTATCCCAACCTGAGAGGGGATTCTAACAGTGCCAAGAGCTATA
TCATGACGGTGAGAACGCAAATCCCATGACACTTGGAGATGATATAACCC
AATACTCTTACTAATAATCAAATGATGGTGATAGTAATAGTACAGCTTCT
GCACCTTGATAACAATGAATTATCATACTACGCTGGGTGACTGTTTATTG
TCAAGCACCTGAGTTGCTCTTTGACCTGGTTCTAAAAGAGTGCTTTTTGG
TGCTGATTTGGTTCATTCTCACAATATACTTTCAAGAAACACCCAGCCCT
ACTTCCAGTCAGTCAAGTTGCAACTTGGTAAATTGATGTATATATTGATA
CGGGTCTAGGGTGAAACCCTGGTGTCTGTGACATGATCCCCCCAAAAATA
TGTAATGGTTACACAATAGTATTAACATGAAGACGACCTCTGTGTCCGAT
AAGCTTTCATTGTGTGGAAAGGACCTACCTGAGTGGACCAACATTGCTAT
ATCGGTATCGCTGGAGGCACACAGCTTGCTCCAAGAGGCATGGCCGGATG
AAGGGGTGGCACCAGGGAAGGTAAGGAATAGAACAAAATGTCGTCGGGTT
TGGGGACACTTGGGGGGGAGAAGGAGAAGGGTCACAGGTTGGGATAATGT
GAAGGGTCGATTGATTTCTCTGGTGCTAAGGGTGTATGTTAATAGTGTGA
TGGTGTCCTGGAGTGCTGGTTTTTATGGTTAGGGTGGATGTGTATGTTAA
TAGTGTGATGATGTCCTGGGATGCCGGTTTTAAGGGTTAGGGTGGATGTG
AAACAGTACAACAGTAGTGGTGATTATTGATATTTCGGGTTAATTGAGGC
AAGGAGTTTTAGAGCATTCCTGGTTAATTTAGCCTTACATGGAGAACCCT
TTGATCCAATGTGTCAACGCCAACACTGTTTATAGTAAAACCTACAATCT
GGGTCCACAACTCGCACTTCACGGGGTCATGCGCCGTACACATCACCCAC
ACAAGCAGGTACCGCCATCCAAGTTAGAGGACATCCTCCAGGAAAACCGC
CTCCTGCCACCACTGCACAAGGCCTCGCTTCAGGGGGACCCAGAAGGGCA
CATGAGGGCAGTTGGAAGGCGTTTCCCGTCGTTGTGCAAGCTGCTGACAG
CATTGCTGGTTGACCCACTACCACGTCCTGGAGACAGTGAGGTGGGTCAT
GGTACAAGTGGAGGAGTGTTAGTTATTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10515:2362..5341+

>mRNA_C-tenellus_contig10515.2.1 ID=mRNA_C-tenellus_contig10515.2.1|Name=mRNA_C-tenellus_contig10515.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=900bp|location=Sequence derived from alignment at C-tenellus_contig10515:2362..5341+ (Choristocarpus tenellus KU2346)
CAAGAAGCAGAGCAGGAGTTCTCCGCCATTGGGGAGGCGATTGTGTCTCA
TCTGCATCCCTCAGAGCTGCCTCTCACAAGGGCGCTTGCCCTGGATGCGG
CGCAGACTTTTGTCCAGCGTGTCCTCAGCTGCCGTTCCCGAGACAAGCAA
TCCTCCAAGCTTAGAAGGCGGGCCTTCAAGGTGCTCCTTGCACACCTTGT
GCCCTTCATGCTTGACTGCCTGCAGACACCTACTGACATTCAACTCCCAG
CCCCCCCACCATCTAAAGGAACAGAGCAAATGCAGGGGCCAGGACAAGGG
ACGGAAGCTAGTCCTGGGGCGAGTTGTGATGGCTCTGGAGCCAAAGGGGA
TGTTACTGATCTTGTGGGGGGGGAGGGGGAGCTAGTGGTGCTTCACTTCT
ATCAGCAGTATCAGCTCAAAGTGGCTGCTCTCGATACGATGGGACGGCTG
TTGATAGTTCTTAGGGCGCTATTCCGACCACCTCTATCCAATCGGGTTCA
GTTAGCGGTGGCTCCTCTTCTCGATGCGGAGGAGGTGGTGCTCAGGGACA
AGGCGGCCAATGTGCTGGGAAAGCTTTCATTGTGTGGAAAGGACCTACCT
GAGTGGACCAACATTGCTATATCGGTATCGCTGGAGGCACACAGCTTGCT
CCAAGAGGCATGGCCGGATGAAGGGCAGGTACCGCCATCCAAGTTAGAGG
ACATCCTCCAGGAAAACCGCCTCCTGCCACCACTGCACAAGGCCTCGCTT
CAGGGGGACCCAGAAGGGCACATGAGGGCAGTTGGAAGGCGTTTCCCGTC
GTTGTGCAAGCTGCTGACAGCATTGCTGGTTGACCCACTACCACGTCCTG
GAGACAGTGAGGTGGGTCATGGTACAAGTGGAGGAGTGTTAGTTATTTAG
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