mRNA_C-tenellus_contig10514.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10514.1.1
Unique NamemRNA_C-tenellus_contig10514.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V0T602_9BILA (CCHC-type domain-containing protein n=1 Tax=Trichinella murrelli TaxID=144512 RepID=A0A0V0T602_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 9.160e-7
Identity = 39/159 (24.53%), Postives = 65/159 (40.88%), Query Frame = 1
Query:   31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507
            +K R  C+ C + GH  + C  +                          AG  + +  G  F    A   DN     N    W  DSGAS  +T++ +Y+ DF   P+  N+ V +G ++P  G G ++    + + +W+   +  V +V K+  NL S
Sbjct:  103 KKDRRKCFKCHRIGHLAKNCTMKTMRN----------------------AGKSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 232          
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 9.230e-7
Identity = 39/159 (24.53%), Postives = 70/159 (44.03%), Query Frame = 1
Query:   31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507
            +K +  C+ C + GH  + C         K+V +               AG    +  G  F   L   T++ +   N    W  DSGAS  +T++ +Y+ DF   PQ  N+ + +G ++P+ G G ++    + + +W+   +  V +V K+  NL S
Sbjct:   97 KKDKRKCFKCHRIGHLAKNCTM-------KTVKN---------------AGQSRQSFGGETF---LCYRTEDNR---NTCRVWLADSGASQHMTRNKEYLADFVTFPQPVNVKIGNGDAIPVYGWGTVNFKVFI-KGKWILNRMEVVWYVPKLGLNLFS 226          
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V0WE00_9BILA (Copia protein n=4 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WE00_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 1.270e-6
Identity = 41/159 (25.79%), Postives = 68/159 (42.77%), Query Frame = 1
Query:   31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507
            +K R  C+ C + GH  + C         K+V +               AG  + +  G  F    A   DN     N    W  DSGAS  +T++ +Y+ DF   P+  N+ V +G ++P  G G ++    + + +W+   +  V +V K+  NL S
Sbjct:  228 KKDRRKCFKCHRIGHLAKNCTM-------KTVRN---------------AGQSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 357          
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V1B5K0_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Trichinella TaxID=6333 RepID=A0A0V1B5K0_TRISP)

HSP 1 Score: 57.8 bits (138), Expect = 1.530e-6
Identity = 41/159 (25.79%), Postives = 68/159 (42.77%), Query Frame = 1
Query:   31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507
            +K R  C+ C + GH  + C         K+V +               AG  + +  G  F    A   DN     N    W  DSGAS  +T++ +Y+ DF   P+  N+ V +G ++P  G G ++    + + +W+   +  V +V K+  NL S
Sbjct:  228 KKDRRKCFKCHRIGHLAKNCTM-------KTVRN---------------AGQSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 357          
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V0TK25_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Trichinella TaxID=6333 RepID=A0A0V0TK25_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 1.550e-6
Identity = 41/159 (25.79%), Postives = 68/159 (42.77%), Query Frame = 1
Query:   31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507
            +K R  C+ C + GH  + C         K+V +               AG  + +  G  F    A   DN     N    W  DSGAS  +T++ +Y+ DF   P+  N+ V +G ++P  G G ++    + + +W+   +  V +V K+  NL S
Sbjct: 1021 KKDRRKCFKCHRIGHLAKNCTM-------KTVRN---------------AGQSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 1150          
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V0Z7R7_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0Z7R7_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 1.820e-6
Identity = 41/159 (25.79%), Postives = 68/159 (42.77%), Query Frame = 1
Query:   31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507
            +K R  C+ C + GH  + C         K+V +               AG  + +  G  F    A   DN     N    W  DSGAS  +T++ +Y+ DF   P+  N+ V +G ++P  G G ++    + + +W+   +  V +V K+  NL S
Sbjct:  227 KKDRRKCFKCHRIGHLAKNCTM-------KTVRN---------------AGKSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTIPAYGRGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 356          
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V1L945_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1L945_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 2.100e-6
Identity = 41/159 (25.79%), Postives = 68/159 (42.77%), Query Frame = 1
Query:   31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507
            +K R  C+ C + GH  + C         K+V +               AG  + +  G  F    A   DN     N    W  DSGAS  +T++ +Y+ DF   P+  N+ V +G ++P  G G ++    + + +W+   +  V +V K+  NL S
Sbjct:  239 KKDRRKCFKCHRIGHLAKNCTM-------KTVRN---------------AGQSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTIPAYGRGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 368          
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V0WA51_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WA51_9BILA)

HSP 1 Score: 57.0 bits (136), Expect = 2.640e-6
Identity = 35/135 (25.93%), Postives = 64/135 (47.41%), Query Frame = 1
Query:  112 PPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFK---TMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507
            P K+  SS  L         +   ++E  K  R+ +    + A V D+   R   ++ W  DSGAS  + ++ +Y+ DF   P+  N+ V +G ++P  G G ++    + + +W+   +  V +V K+  NL S
Sbjct:  399 PEKTTDSSVALT--------VKTDTKENVKKDRRNEECGAVTAVVGDSLWWRFVCYQMWLADSGASQHIARNKEYLSDFVTFPKPVNVKVGNGDAIPAYGQGTVNFKVFI-KGKWILNRMEDVWYVPKLELNLFS 524          
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V1NHV8_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1NHV8_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 9.280e-6
Identity = 28/90 (31.11%), Postives = 47/90 (52.22%), Query Frame = 1
Query:  238 TDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507
            TDN     N    W  DSGAS  +T++ +Y+ DF   P+  N+ V +G ++P  G G ++    + + +W+   +  V +V K+  NL S
Sbjct:  207 TDN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 291          
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A1Y3EJI6_9BILA (Integrase core domain protein n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EJI6_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 1.190e-5
Identity = 25/82 (30.49%), Postives = 44/82 (53.66%), Query Frame = 1
Query:  262 NAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507
            N    W  DSGAS  +T++ +Y+ DF   P+  N+ V +G ++P  G G ++    + + +W+   +  V +V K+  NL S
Sbjct:   29 NTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 109          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A0V0T602_9BILA9.160e-724.53CCHC-type domain-containing protein n=1 Tax=Trichi... [more]
A0A0V1HEX2_9BILA9.230e-724.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0WE00_9BILA1.270e-625.79Copia protein n=4 Tax=Trichinella sp. T6 TaxID=921... [more]
A0A0V1B5K0_TRISP1.530e-625.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0TK25_9BILA1.550e-625.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0Z7R7_9BILA1.820e-625.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1L945_9BILA2.100e-625.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0WA51_9BILA2.640e-625.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1NHV8_9BILA9.280e-631.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y3EJI6_9BILA1.190e-530.49Integrase core domain protein n=1 Tax=Trichinella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10514contigC-tenellus_contig10514:4177..4704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3827.XP_004514121.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve
Model size528
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.01e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RIF@33090|Viridiplantae,3G9AM@35493|Streptophyta,4JTRP@91835|fabids
Descriptioncysteine-rich RLK (RECEPTOR-like protein kinase) 8
Cds size528
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.8534825-CDS-C-tenellus_contig10514:4176..47041680789135.8534825-CDS-C-tenellus_contig10514:4176..4704Choristocarpus tenellus KU2346CDSC-tenellus_contig10514 4177..4704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10514.1.1prot_C-tenellus_contig10514.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10514 4177..4704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10514.1.1

>prot_C-tenellus_contig10514.1.1 ID=prot_C-tenellus_contig10514.1.1|Name=mRNA_C-tenellus_contig10514.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=176bp
MYGLVKHFSSRKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRA
NPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGAS
NSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWV
HGTLTSVAFVQKVAFNLLSSYSASRD
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mRNA from alignment at C-tenellus_contig10514:4177..4704-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10514.1.1 ID=mRNA_C-tenellus_contig10514.1.1|Name=mRNA_C-tenellus_contig10514.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=528bp|location=Sequence derived from alignment at C-tenellus_contig10514:4177..4704- (Choristocarpus tenellus KU2346)
ATGTATGGATTGGTGAAGCATTTCAGTTCCCGTAAATCCAGAGGACCGTG TTACAGCTGCAGGAAGAATGGCCACCCGTTTGAGCTGTGTGCCCCTCAGA GGAGGGCAGGACCACCAAAGTCGGTGGTAAGTTCATATTGCCTGAGGGCG AATCCGTTAGAGTCGGCAGGAATACTAGCTGGATCAGAGGAACCGGCTAA GACTGGAAGGAAGTTTAAGACCATGTTAGCCACTGTGACTGATAATGGCA AGGTGAGATTGAATGCTTTCGAAACGTGGAGTTTTGATTCGGGTGCTTCC AACAGTGTAACGAAAGACTCGCAGTACATATATGACTTCGCCCCATGTCC ACAAGGCCACAACATGACCGTGGCTGACGGCACATCACTACCCATTATGG GGGATGGCAATATTGATTTAAATTTCAATGTTGGCCGTGATGAGTGGGTG CATGGTACTCTGACGTCTGTTGCATTTGTTCAGAAAGTAGCTTTCAATCT TCTCTCTTCATATTCTGCTAGTAGGGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig10514:4177..4704-

>mRNA_C-tenellus_contig10514.1.1 ID=mRNA_C-tenellus_contig10514.1.1|Name=mRNA_C-tenellus_contig10514.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=528bp|location=Sequence derived from alignment at C-tenellus_contig10514:4177..4704- (Choristocarpus tenellus KU2346)
ATGTATGGATTGGTGAAGCATTTCAGTTCCCGTAAATCCAGAGGACCGTG
TTACAGCTGCAGGAAGAATGGCCACCCGTTTGAGCTGTGTGCCCCTCAGA
GGAGGGCAGGACCACCAAAGTCGGTGGTAAGTTCATATTGCCTGAGGGCG
AATCCGTTAGAGTCGGCAGGAATACTAGCTGGATCAGAGGAACCGGCTAA
GACTGGAAGGAAGTTTAAGACCATGTTAGCCACTGTGACTGATAATGGCA
AGGTGAGATTGAATGCTTTCGAAACGTGGAGTTTTGATTCGGGTGCTTCC
AACAGTGTAACGAAAGACTCGCAGTACATATATGACTTCGCCCCATGTCC
ACAAGGCCACAACATGACCGTGGCTGACGGCACATCACTACCCATTATGG
GGGATGGCAATATTGATTTAAATTTCAATGTTGGCCGTGATGAGTGGGTG
CATGGTACTCTGACGTCTGTTGCATTTGTTCAGAAAGTAGCTTTCAATCT
TCTCTCTTCATATTCTGCTAGTAGGGAT
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