mRNA_C-tenellus_contig10514.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V0T602_9BILA (CCHC-type domain-containing protein n=1 Tax=Trichinella murrelli TaxID=144512 RepID=A0A0V0T602_9BILA) HSP 1 Score: 57.4 bits (137), Expect = 9.160e-7 Identity = 39/159 (24.53%), Postives = 65/159 (40.88%), Query Frame = 1 Query: 31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507 +K R C+ C + GH + C + AG + + G F A DN N W DSGAS +T++ +Y+ DF P+ N+ V +G ++P G G ++ + + +W+ + V +V K+ NL S Sbjct: 103 KKDRRKCFKCHRIGHLAKNCTMKTMRN----------------------AGKSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 232
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA) HSP 1 Score: 58.2 bits (139), Expect = 9.230e-7 Identity = 39/159 (24.53%), Postives = 70/159 (44.03%), Query Frame = 1 Query: 31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507 +K + C+ C + GH + C K+V + AG + G F L T++ + N W DSGAS +T++ +Y+ DF PQ N+ + +G ++P+ G G ++ + + +W+ + V +V K+ NL S Sbjct: 97 KKDKRKCFKCHRIGHLAKNCTM-------KTVKN---------------AGQSRQSFGGETF---LCYRTEDNR---NTCRVWLADSGASQHMTRNKEYLADFVTFPQPVNVKIGNGDAIPVYGWGTVNFKVFI-KGKWILNRMEVVWYVPKLGLNLFS 226
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V0WE00_9BILA (Copia protein n=4 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WE00_9BILA) HSP 1 Score: 57.8 bits (138), Expect = 1.270e-6 Identity = 41/159 (25.79%), Postives = 68/159 (42.77%), Query Frame = 1 Query: 31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507 +K R C+ C + GH + C K+V + AG + + G F A DN N W DSGAS +T++ +Y+ DF P+ N+ V +G ++P G G ++ + + +W+ + V +V K+ NL S Sbjct: 228 KKDRRKCFKCHRIGHLAKNCTM-------KTVRN---------------AGQSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 357
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V1B5K0_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Trichinella TaxID=6333 RepID=A0A0V1B5K0_TRISP) HSP 1 Score: 57.8 bits (138), Expect = 1.530e-6 Identity = 41/159 (25.79%), Postives = 68/159 (42.77%), Query Frame = 1 Query: 31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507 +K R C+ C + GH + C K+V + AG + + G F A DN N W DSGAS +T++ +Y+ DF P+ N+ V +G ++P G G ++ + + +W+ + V +V K+ NL S Sbjct: 228 KKDRRKCFKCHRIGHLAKNCTM-------KTVRN---------------AGQSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 357
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V0TK25_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Trichinella TaxID=6333 RepID=A0A0V0TK25_9BILA) HSP 1 Score: 57.8 bits (138), Expect = 1.550e-6 Identity = 41/159 (25.79%), Postives = 68/159 (42.77%), Query Frame = 1 Query: 31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507 +K R C+ C + GH + C K+V + AG + + G F A DN N W DSGAS +T++ +Y+ DF P+ N+ V +G ++P G G ++ + + +W+ + V +V K+ NL S Sbjct: 1021 KKDRRKCFKCHRIGHLAKNCTM-------KTVRN---------------AGQSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 1150
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V0Z7R7_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0Z7R7_9BILA) HSP 1 Score: 57.4 bits (137), Expect = 1.820e-6 Identity = 41/159 (25.79%), Postives = 68/159 (42.77%), Query Frame = 1 Query: 31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507 +K R C+ C + GH + C K+V + AG + + G F A DN N W DSGAS +T++ +Y+ DF P+ N+ V +G ++P G G ++ + + +W+ + V +V K+ NL S Sbjct: 227 KKDRRKCFKCHRIGHLAKNCTM-------KTVRN---------------AGKSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTIPAYGRGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 356
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V1L945_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1L945_9BILA) HSP 1 Score: 57.4 bits (137), Expect = 2.100e-6 Identity = 41/159 (25.79%), Postives = 68/159 (42.77%), Query Frame = 1 Query: 31 RKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFKTMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507 +K R C+ C + GH + C K+V + AG + + G F A DN N W DSGAS +T++ +Y+ DF P+ N+ V +G ++P G G ++ + + +W+ + V +V K+ NL S Sbjct: 239 KKDRRKCFKCHRIGHLAKNCTM-------KTVRN---------------AGQSQQSFGGESFFCYHAE--DN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTIPAYGRGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 368
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V0WA51_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WA51_9BILA) HSP 1 Score: 57.0 bits (136), Expect = 2.640e-6 Identity = 35/135 (25.93%), Postives = 64/135 (47.41%), Query Frame = 1 Query: 112 PPKSVVSSYCLRANPLESAGILAGSEEPAKTGRKFK---TMLATVTDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507 P K+ SS L + ++E K R+ + + A V D+ R ++ W DSGAS + ++ +Y+ DF P+ N+ V +G ++P G G ++ + + +W+ + V +V K+ NL S Sbjct: 399 PEKTTDSSVALT--------VKTDTKENVKKDRRNEECGAVTAVVGDSLWWRFVCYQMWLADSGASQHIARNKEYLSDFVTFPKPVNVKVGNGDAIPAYGQGTVNFKVFI-KGKWILNRMEDVWYVPKLELNLFS 524
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A0V1NHV8_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1NHV8_9BILA) HSP 1 Score: 55.5 bits (132), Expect = 9.280e-6 Identity = 28/90 (31.11%), Postives = 47/90 (52.22%), Query Frame = 1 Query: 238 TDNGKVRLNAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507 TDN N W DSGAS +T++ +Y+ DF P+ N+ V +G ++P G G ++ + + +W+ + V +V K+ NL S Sbjct: 207 TDN----RNTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 291
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Match: A0A1Y3EJI6_9BILA (Integrase core domain protein n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EJI6_9BILA) HSP 1 Score: 55.1 bits (131), Expect = 1.190e-5 Identity = 25/82 (30.49%), Postives = 44/82 (53.66%), Query Frame = 1 Query: 262 NAFETWSFDSGASNSVTKDSQYIYDFAPCPQGHNMTVADGTSLPIMGDGNIDLNFNVGRDEWVHGTLTSVAFVQKVAFNLLS 507 N W DSGAS +T++ +Y+ DF P+ N+ V +G ++P G G ++ + + +W+ + V +V K+ NL S Sbjct: 29 NTCRMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFI-KGKWILNRMEDVWYVPKLGLNLFS 109 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10514.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10514.1.1 >prot_C-tenellus_contig10514.1.1 ID=prot_C-tenellus_contig10514.1.1|Name=mRNA_C-tenellus_contig10514.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=176bp MYGLVKHFSSRKSRGPCYSCRKNGHPFELCAPQRRAGPPKSVVSSYCLRAback to top mRNA from alignment at C-tenellus_contig10514:4177..4704- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10514.1.1 ID=mRNA_C-tenellus_contig10514.1.1|Name=mRNA_C-tenellus_contig10514.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=528bp|location=Sequence derived from alignment at C-tenellus_contig10514:4177..4704- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10514:4177..4704- >mRNA_C-tenellus_contig10514.1.1 ID=mRNA_C-tenellus_contig10514.1.1|Name=mRNA_C-tenellus_contig10514.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=528bp|location=Sequence derived from alignment at C-tenellus_contig10514:4177..4704- (Choristocarpus tenellus KU2346)back to top |