mRNA_C-tenellus_contig10511.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10511.1.1
Unique NamemRNA_C-tenellus_contig10511.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10511.1.1 vs. uniprot
Match: D7FT23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT23_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.470e-43
Identity = 101/222 (45.50%), Postives = 134/222 (60.36%), Query Frame = 1 
Query:    1 LWIPLLKDPALEVRAAAAQGALGMATAASLQQLQSSGEDGKQVLRLLVDMLASGDPTVSRVVAGNAGAFVSDGGKILMALYAGEGGKDPGGRGGIGDSAAWGERMSQGTQGVVGVAAAGALAREQAVSNFIEEVGARLREHGNKERHERAVSLNEFSALLRSLGSIGCEIDPNDGLGLTVLVWVLFQLIDVWGDRDTSFNFHSYDEIVRVCSRGRIPLARLL 666
            LW  LLKD ++ VRAAAA+  L  A AA L +L+ +G  G  VLRLL  ML+ GDP VS VVAG AG F+++GGK+L A+Y      D   +G  G+                        +RE+A+S FIE +G  L+EHG+  R  R  SL+EF+ALLR+LGSIGCE DP+D LG TV +W L +L+DVW D        ++++IVRVC+ G+ PL  LL
Sbjct: 1210 LWPALLKDESVAVRAAAARAVLAAAGAAPLSRLRLAGRAGAAVLRLLTSMLSCGDPEVSWVVAGGAGLFLAEGGKMLRAMYH-YNSVDAAAQGAPGEEMEVXXXXXXXXXXXXXXXXXXXRSREKALSRFIETIGKMLQEHGDGLRLGRWQSLHEFTALLRALGSIGCESDPSDDLGRTVYLWTLIRLVDVWVDEGNECAPAAHEQIVRVCNHGKAPLPHLL 1430
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10511.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT23_ECTSI2.470e-4345.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10511contigC-tenellus_contig10511:3503..5127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size666
Hectar predicted targeting categoryother localisation
Exons3
Cds size666
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.7279932-CDS-C-tenellus_contig10511:3502..36771680789135.7279932-CDS-C-tenellus_contig10511:3502..3677Choristocarpus tenellus KU2346CDSC-tenellus_contig10511 3503..3677 -
1680789135.7448788-CDS-C-tenellus_contig10511:4468..46771680789135.7448788-CDS-C-tenellus_contig10511:4468..4677Choristocarpus tenellus KU2346CDSC-tenellus_contig10511 4469..4677 -
1680789135.7570488-CDS-C-tenellus_contig10511:4845..51271680789135.7570488-CDS-C-tenellus_contig10511:4845..5127Choristocarpus tenellus KU2346CDSC-tenellus_contig10511 4846..5127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10511.1.1prot_C-tenellus_contig10511.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10511 3503..5127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10511.1.1

>prot_C-tenellus_contig10511.1.1 ID=prot_C-tenellus_contig10511.1.1|Name=mRNA_C-tenellus_contig10511.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=222bp
LWIPLLKDPALEVRAAAAQGALGMATAASLQQLQSSGEDGKQVLRLLVDM
LASGDPTVSRVVAGNAGAFVSDGGKILMALYAGEGGKDPGGRGGIGDSAA
WGERMSQGTQGVVGVAAAGALAREQAVSNFIEEVGARLREHGNKERHERA
VSLNEFSALLRSLGSIGCEIDPNDGLGLTVLVWVLFQLIDVWGDRDTSFN
FHSYDEIVRVCSRGRIPLARLL
back to top

mRNA from alignment at C-tenellus_contig10511:3503..5127-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10511.1.1 ID=mRNA_C-tenellus_contig10511.1.1|Name=mRNA_C-tenellus_contig10511.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1625bp|location=Sequence derived from alignment at C-tenellus_contig10511:3503..5127- (Choristocarpus tenellus KU2346)
CTGTGGATACCCCTGCTGAAAGACCCGGCATTGGAGGTGCGTGCGGCTGC
AGCGCAGGGAGCTCTGGGAATGGCCACGGCAGCTTCACTCCAGCAGCTCC
AGAGCTCTGGGGAGGATGGGAAGCAAGTGTTGAGACTCTTGGTGGACATG
CTCGCCTCTGGGGACCCAACAGTGTCACGGGTGGTAGCTGGCAATGCGGG
TGCATTTGTGTCCGATGGTGGGAAGATCCTCATGGCACTCTATGCTGGGG
AGGGTGGTAAAGATCCCGGGGGCAGAGGCGGAGTCATGCCTAGGGCTCAG
GAAGGAGGGGGGAGTGGTAGGAAGAGGGTCAGGAGTATGCAGTCGAAAGG
AATTGGGGTGACTGGAGGGGGGGGGAAAGGGAGCAATGAGACAGAGACAA
AAAGTGGGAAGATAAATGGAGAGGGTGATGGTGATGAGGAGACAATGAAG
ATTGGAGATAGTGCTGCTTGGGGGGAGAGGATGAGCCAAGGAACCCAGGG
AGTAGTAGGGGTGGCAGCGGCAGGTGCACTGGCGCGAGAGCAGGCGGTGT
CGAATTTCATTGAAGAGGTTGGGGCTAGGTTGAGGGAGCATGGCAACAAG
GAGCGTCATGAGCGTGCAGTATCTCTCAATGAGTTCTCTGCATTGCTGCG
GTCTTTGGGGTGAGTTTGAGAGGGCGGTGATGAGGAAGAAAAGGGTTGTG
ATGGGGAGTGCCGATTCATCATACCTGTGTGTGTATGTATGCATGTATGC
TTGTGTGCCTTACATGTGCTTTTTTTGTACTTTCTTCAAGTTTTGCTGTT
TTTTTTGCATTCATATTGTGTGTGTGTGTCATGTTTTTTATTGTGGGTTG
ATTGGCATGTGTGAAATGCCAGATCTTCCCATTGGTCAGAGGTCAAGGAA
ACGTCTCCTAAGCAAGAGTCAATCAACCTTGTTGTTTCTCATGAAAACGC
CTTCCAGTATGTGTCTACTGCATATTGTTAGTACGCTGATGAAGTAGTTC
TATAAATATAATATTTACTGTATACTACGAGGTATGTAACAAGAGTGTGT
GTTGTTGAATCCCCTCAGTTGCTCAATCTGTTGGACCGGATAAGTTGCAG
AGGAGTGATTTAGTTGCCAAAATAAACCTCTGTCCAAAAGGTGAGATTGA
GAGGATGGGGTCAGTTGGAGAATGGCATTTCAGCCATCACTGAAAAAGTT
ACCACCAAGAGCAAATAAGAAATTTAATGCATCAGATAGAGTTTGGATGG
TTTTCACAGGCGAATGAGGTGGGTGTGATTTTTAAGGGGTGGGTTCTGCA
AAACTAAAAGCATTGAAGCAAGAATATGTGAGCAGTCCCCCTACCCTCAC
TCCTAGGCTTCCCACTTCCGCCACCCTCCAAACCACCTGCCTTAACCCTA
TTATCCCTTTTTGTTTGTCTGTAAAATCCTTTCTAACAATGAAAAAATAG
TTCCATTGGGTGCGAGATCGACCCCAACGATGGCCTGGGCCTGACGGTGC
TTGTTTGGGTGCTCTTTCAGTTGATCGATGTGTGGGGGGATAGGGACACC
TCCTTCAATTTTCACTCCTATGATGAGATTGTTCGTGTTTGCTCAAGGGG
AAGAATCCCTTTGGCAAGGCTACTT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10511:3503..5127-

>mRNA_C-tenellus_contig10511.1.1 ID=mRNA_C-tenellus_contig10511.1.1|Name=mRNA_C-tenellus_contig10511.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=666bp|location=Sequence derived from alignment at C-tenellus_contig10511:3503..5127- (Choristocarpus tenellus KU2346)
CTGTGGATACCCCTGCTGAAAGACCCGGCATTGGAGGTGCGTGCGGCTGC
AGCGCAGGGAGCTCTGGGAATGGCCACGGCAGCTTCACTCCAGCAGCTCC
AGAGCTCTGGGGAGGATGGGAAGCAAGTGTTGAGACTCTTGGTGGACATG
CTCGCCTCTGGGGACCCAACAGTGTCACGGGTGGTAGCTGGCAATGCGGG
TGCATTTGTGTCCGATGGTGGGAAGATCCTCATGGCACTCTATGCTGGGG
AGGGTGGTAAAGATCCCGGGGGCAGAGGCGGAATTGGAGATAGTGCTGCT
TGGGGGGAGAGGATGAGCCAAGGAACCCAGGGAGTAGTAGGGGTGGCAGC
GGCAGGTGCACTGGCGCGAGAGCAGGCGGTGTCGAATTTCATTGAAGAGG
TTGGGGCTAGGTTGAGGGAGCATGGCAACAAGGAGCGTCATGAGCGTGCA
GTATCTCTCAATGAGTTCTCTGCATTGCTGCGGTCTTTGGGTTCCATTGG
GTGCGAGATCGACCCCAACGATGGCCTGGGCCTGACGGTGCTTGTTTGGG
TGCTCTTTCAGTTGATCGATGTGTGGGGGGATAGGGACACCTCCTTCAAT
TTTCACTCCTATGATGAGATTGTTCGTGTTTGCTCAAGGGGAAGAATCCC
TTTGGCAAGGCTACTT
back to top