mRNA_C-tenellus_contig1051.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1051.5.1
Unique NamemRNA_C-tenellus_contig1051.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Match: A0A6H5KV70_9PHAE (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV70_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 1.590e-88
Identity = 155/328 (47.26%), Postives = 202/328 (61.59%), Query Frame = 3
Query:  114 SDGQPQQEIDWISLESQLIGGTLAALQDHFQ---------------QAKDREPNE--EGKSNIGNGKVSPVFED---VIPTSNKVYKHREYWDHRFETEEHYDWLLAYVDLRDHIRRTVARTARVVVVGCGNSNLSADMYDDGY--TSLLSTDFSEVVINAMRQRHEHERPGLRWERMDMLDLSIEDASVDAVIDKAAMDALMVDEGDVWHPEASVIELADRMCREVARVLRPGGVFLQISFAQPHFRKKYISGEHATCRARECAVQGVDIPSKSIIEERGFGCDCDNNSTAVRENSPVQSRYDWSLESFEVQREGGCFGHFVYVMKK 1031
            S+G+   E+DW+SLE+ L   TL +L+ H Q               +A + EP    +G S  G G  SP        +P SN VYK +EYWD RF  EE YDWL +Y D+ +H+   V R ARV+VVGCGNS LSADMYDDGY    ++STDFS VVI+ MR +H   RPGLRWE+MDML L+ EDAS DAV+DKAAMDALMVD+GD W P+ + IE + RMC EV+RVL  GGVF+Q+SF Q HFR+K++ GEH        A  G+ + ++   E+ G   D +               Y W L+  ++QREGGCFG F+Y+++K
Sbjct:    9 SEGEEVLEVDWVSLETNLSAETLESLRQHLQHQDGATVAAPSSAEERAAEAEPVSAADGSSRSGGGSTSPTRNAGLVALPASNLVYKAKEYWDSRFSEEESYDWLASYADIAEHLHEAVPRDARVLVVGCGNSGLSADMYDDGYRRVDMVSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAEDASFDAVVDKAAMDALMVDKGDPWSPDRATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRRKFLLGEHP-------AAAGL-LDARRQGEDEGHSNDGEGGGP-----------YGWDLQVHDIQREGGCFGQFLYLLRK 317          
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Match: A0A7S2Y3W0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3W0_9STRA)

HSP 1 Score: 216 bits (551), Expect = 6.370e-64
Identity = 105/228 (46.05%), Postives = 146/228 (64.04%), Query Frame = 3
Query:  357 YDWLLAYVDLRDHIRRTVARTARVVVVGCGNSNLSADMYDDGYTSLLSTDFSEVVINAMRQRHEHERPGLRWERMDMLDLSIEDASVDAVIDKAAMDALMVDEGDVWHPEASVIELADRMCREVARVLRPGGVFLQISFAQPHFRKKYISGEHATCRARECAVQGVDIPSKSIIEERGFGCDCDNNSTAVRENSPVQSRYDWSLESFEVQREGGCFGHFVYVMKKYQM 1040
            Y+WL++Y DL++H+R  +    +V++VGCGNS+LS+DMYDDG+ ++ S D+S VVI  M+Q+ + +RPG++WE MDM+DL+ ++ S D V+DKAAMDALM +EGD W+P + V+    RMC  ++RVLRPGGV LQISFAQPHFR+KY+ GEH                             C  N             Y+WS E   + REGGCFGHF+Y+MKK ++
Sbjct:    1 YEWLVSYADLKEHLRTYIFPENKVLLVGCGNSSLSSDMYDDGFINITSIDYSPVVIEKMKQKSQ-DRPGMKWEVMDMMDLTFDEGSFDCVLDKAAMDALMCEEGDPWNPNSEVVTSVSRMCSCISRVLRPGGVHLQISFAQPHFRRKYLMGEH-----------------------------CSEN-------------YNWSFEYINLVREGGCFGHFLYIMKKQEL 185          
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Match: A0A482S291_9ARCH (Class I SAM-dependent methyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S291_9ARCH)

HSP 1 Score: 216 bits (551), Expect = 1.790e-63
Identity = 107/253 (42.29%), Postives = 157/253 (62.06%), Query Frame = 3
Query:  273 VFEDVIPTSNKVYKHREYWDHRFETEEHYDWLLAYVDLRDHIRRTVARTARVVVVGCGNSNLSADMYDDGYTSLLSTDFSEVVINAMRQRHEHERPGLRWERMDMLDLSIEDASVDAVIDKAAMDALMVDEGDVWHPEASVIELADRMCREVARVLRPGGVFLQISFAQPHFRKKYISGEHATCRARECAVQGVDIPSKSIIEERGFGCDCDNNSTAVRENSPVQSRYDWSLESFEVQREGGCFGHFVYVMKK 1031
              +D  P SN  +K +EYW+ RF+ EE Y+WL ++ ++R  I   +  T R+++VGCGNS+ SAD+YD+G+ ++ + DF+E VI  +R+ H   RP + WE MDM  L+  D S D V+DKAAMDAL+VDEGDVW P+ SVI++ D+MC  +++VL+  G+ +QISFAQPHFR KY+ G  A         +GV                   NS+  + ++ + +RY WSL    ++ EGGC   F+Y+MKK
Sbjct:    3 TVDDFTPDSNADFKLQEYWERRFQKEESYEWLTSWKNVRTQILPYIKPTDRILIVGCGNSSFSADIYDEGFHNITNIDFAESVITRLRELHVLSRPEMSWEVMDMTALAFTDESFDVVLDKAAMDALVVDEGDVWDPDLSVIDVVDKMCLGISKVLKSTGIHMQISFAQPHFRTKYLIGYRA---------EGV-------------------NSSPYQASTGLAARYGWSLSYETIENEGGCLNSFLYIMKK 227          
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Match: A0A836CL89_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL89_9STRA)

HSP 1 Score: 192 bits (489), Expect = 3.480e-54
Identity = 99/202 (49.01%), Postives = 132/202 (65.35%), Query Frame = 3
Query:  288 IPTSNKVYKHREYWDHRFETEEHYDWLLAYVDLRDHIRRTV--ARTARVVVVGCGNSNLSADMYDDGYTSLLSTDFSEVVINAMRQRHEHERPGLRWERMDMLDLSIEDASVDAVIDKAAMDALMVDEGDVWHPEASVIELADRMCREVARVLRPGGVFLQISFAQPHFRKKYISGEHA--------TCRARECAVQGVDIP 863
            +P SN  Y  REYW+ RF  E+ YDWL  Y D+   +       + +R+++VGCGNS L+ DM+D GY +L+STDFSEVVI AM+QR+  + PGLRWE MDML+L   + S D V+DKAAMDA+   EGD+W P+ +VI+   RMC  V+RVL PGG F+QISF QPHFR  Y++G+           C  RE  ++G  +P
Sbjct:   22 LPASNSDYSKREYWNTRFADEQEYDWLAGYKDIASILSELTPKGKDSRILLVGCGNSTLTKDMHDAGYRNLVSTDFSEVVIQAMQQRY-GDLPGLRWEVMDMLNLQYPEGSFDMVLDKAAMDAITTAEGDMWDPDPAVIDAVHRMCTGVSRVLVPGGTFVQISFVQPHFRLPYLTGKRVGASVDYGWQCSKRE--IEGKVMP 220          
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Match: B5Y4M4_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y4M4_PHATC)

HSP 1 Score: 184 bits (467), Expect = 6.420e-52
Identity = 91/170 (53.53%), Postives = 121/170 (71.18%), Query Frame = 3
Query:  300 NKVYKHREYWDHRFETEEHYDWLLAYVDLRDHIRRTVARTARVVVVGCGNSNLSADMYDDGYTSLLSTDFSEVVINAMRQRHEHERPGLRWERMDMLDLS-IEDASVDAVIDKAAMDALMVDEGDVWHPEASVIELADRMCREVARVLRP-GGVFLQISFAQPHFRKKYI 803
            N  Y   +YW+ RFE E+ ++WLL+Y  L   I   +   +R++VVGCGN+  SAD+YD GY ++++ D+SE VI  M+QRH  ER  + W  MDM DLS + DAS D VIDKAAMDA+M  E DVW+P+ASV+  +  MCR ++R+LRP GGVFLQIS AQPHFRK+Y+
Sbjct:    1 NSTYGSHDYWEDRFENEDSFEWLLSYEQLAAQIEPHLLPVSRILVVGCGNAPFSADLYDAGYHNIVNVDYSETVIANMQQRHLTERLQMEWLVMDMTDLSALMDASFDVVIDKAAMDAIMTKESDVWNPDASVVRASRDMCRHISRILRPDGGVFLQISLAQPHFRKRYL 170          
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Match: A0A2H3JC97_WOLCO (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3JC97_WOLCO)

HSP 1 Score: 184 bits (468), Expect = 1.520e-51
Identity = 90/188 (47.87%), Postives = 123/188 (65.43%), Query Frame = 3
Query:  285 VIPTSNKVYKHREYWDHRFETEEH---YDWLLAYVDLRDHIRRTV-ARTARVVVVGCGNSNLSADMYDDGYTSLLSTDFSEVVINAMRQRHEHERPGLRWERMDMLDLSIEDASVDAVIDKAAMDALMVDEGDVWHPEASVIELADRMCREVARVLR-PGGVFLQISFAQPHFRKKYISGEHATCRAR 833
            V+P  N+ Y  REYWD R+  E     +DW  +Y D+ D IR  + +R AR++++GCGNS LS +MYDDGY ++++TD+S V+I  MR RH++ RP + W  MD+ +LS E  S D  IDK  MDA+M  +GDVW P A V E  +R   EV R+LR PGGVF+ ++F QPHFRK+Y+S    T   R
Sbjct:    7 VLPEKNESYSTREYWDQRYSQESEDASFDWFKSYADVADIIRELIPSRDARILMLGCGNSRLSEEMYDDGYKNIINTDYSGVLIEKMRHRHQNTRPEMEWHEMDIRELSFESDSFDVAIDKGTMDAMMTAKGDVWDPPAEVDENCNREVDEVLRILRKPGGVFIYLTFGQPHFRKRYLSRPGTTLEVR 194          
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Match: A0A1X6N749_9APHY (Methyltransf_11 domain-containing protein n=3 Tax=Postia placenta TaxID=104341 RepID=A0A1X6N749_9APHY)

HSP 1 Score: 184 bits (467), Expect = 1.880e-51
Identity = 86/188 (45.74%), Postives = 123/188 (65.43%), Query Frame = 3
Query:  282 DVIPTSNKVYKHREYWDHRFETEEH---YDWLLAYVDLRDHIRRTVA-RTARVVVVGCGNSNLSADMYDDGYTSLLSTDFSEVVINAMRQRHEHERPGLRWERMDMLDLSIEDASVDAVIDKAAMDALMVDEGDVWHPEASVIELADRMCREVARVLRPGGVFLQISFAQPHFRKKYISGEHATCRAR 833
            DV+P  N  Y  +EYWD R+  E     +DW  +Y D+ D IR  +  + +R++++GCGNS LS DMYDDGY S+++TD+S V+I  M+QRHE+ RP ++W  MD+ DL  E  + D  IDK  MDA+M  +GDVW P   V+E  +R   EV RVL+PGG+F+ ++F QPHFR++Y++    T   R
Sbjct:    3 DVLPQKNDEYGSKEYWDQRYSKEPSGASFDWFKSYADVADIIRELIPDKASRILMLGCGNSTLSEDMYDDGYKSIVNTDYSGVLIENMQQRHEYTRPEMQWLEMDIRDLKFEQDTFDVAIDKGTMDAMMTAKGDVWDPPEDVVENCNREVDEVLRVLKPGGIFIYLTFGQPHFRRRYLTRPGTTLEVR 190          
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Match: A0A225WNN2_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNN2_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.860e-50
Identity = 101/252 (40.08%), Postives = 138/252 (54.76%), Query Frame = 3
Query:  282 DVIPTSNKVYKHREYWDHRFETEEHYDWLLAYVDLRDHIRRTVARTARVVVVGCGNSNLSADMYDDGYTSLLSTDFSEVVINAMRQRHEHERPGLRWERMDMLDLS--IEDASVDAVIDKAAMDALMVDEGDVWHPEASVIELADRMCREVARVLRPGGVFLQISFAQPHFRKKYISGEHATCRARECAVQGVDIPSKSIIEERGFGCDCDNNSTAVRENSPVQSRYDWSLESFEVQREGGCFGHFVYVMKK 1031
            + +P SN  YK + YWD RF+ EE YDWL  Y D+ D + + V  + R+++VGCGNS  S DMY  G+ ++ + DFS+VVI  M  +H  E P ++W   DM  L       S D VIDKAAMDALM DEGDVW P  +VIE A  MC  +  VL P G F+QISFAQPHFR++++ GE            G  +P+ +I     +G                   +D+S  + E+       G+F YV++K
Sbjct:    3 EYLPESNHTYKEKGYWDSRFDKEETYDWLARYEDVADLLDKYVRPSDRILMVGCGNSTFSIDMYQAGFHNITNIDFSKVVIERMSAKHSEEMPEMKWLEADMTKLGEVFTSESFDVVIDKAAMDALMCDEGDVWSPSDAVIEQAAAMCNGITSVLVPQGTFVQISFAQPHFRRRFLLGE------------GEQVPTSTI-----YG-------------------WDYSYHNIEI-----GLGYFFYVLQK 213          
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Match: A0A7S3GQV7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQV7_9STRA)

HSP 1 Score: 182 bits (462), Expect = 3.610e-50
Identity = 107/273 (39.19%), Postives = 148/273 (54.21%), Query Frame = 3
Query:  216 DREPNEEGK-SNIGNGKVSPVFEDVIPTSNKVYKHREYWDHRFETEEHYDWLLAYVDLRDHIRRTVARTARVVVVGCGNSNLSADMYDDGYTSLLSTDFSEVVINAMRQRHEHERPGLRWERMDMLDLSIEDASVDAVIDKAAMDALMVDEGDVWHPEASVIELADRMCREVARVLRPG-GVFLQISFAQPHFRKKYISGEHATCRARECAVQGVDI-PSKSIIEERGFGCDCDNNSTAVRENSPVQSRYDWSLESFEVQREGGCFGHFVYVM 1025
            DR  NE+ K   +    +    +D     NKVY    YW+ RF  EE YDWL+ Y  L + +   + +T +++VVGCGNS  S  ++D G+T++ + D+S VVI+ MR+ H  E P + W  MDM ++S  D + D V+DKAAMDAL+V+EGDVW PE + IE+  +M  EV RVL+PG G  +QISF+QPHFR KY+ G   T         G D+ P +S          C   S            Y W+L    V +  G    F+YVM
Sbjct:    5 DRMENEDTKVEKVSEQSIGSDVDDSNARFNKVY----YWNERFAGEEKYDWLMEYQHLSNELEPLLKKTDKILVVGCGNSTFSRQLFDAGFTNVTNIDYSGVVIDKMRELHSAECPTMEWVEMDMTNMSFPDQTFDVVLDKAAMDALVVEEGDVWDPEPATIEVVHKMSAEVRRVLKPGHGRHIQISFSQPHFRTKYLMGHRHT---------GADVSPYES----------CKGESDV----------YKWNLSYKTVNKGAGSLDMFMYVM 244          
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Match: T0S8X2_SAPDV (Methyltransf_11 domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0S8X2_SAPDV)

HSP 1 Score: 179 bits (455), Expect = 1.190e-49
Identity = 88/173 (50.87%), Postives = 119/173 (68.79%), Query Frame = 3
Query:  300 NKVYKHREYWDHRFETEEHYDWLLAYVDLRDHIRRTVARTARVVVVGCGNSNLSADMYDDGYTSLLSTDFSEVVINAMRQRHEHERPGLRWERMDMLDLS--IEDASVDAVIDKAAMDALMVDEGDVWHPEASVIELADRMCREVARVLRPGGVFLQISFAQPHFRKKYISGE 812
            NK YK++ YWD RF +EE YDWL  Y D+ D I + V +++R+++VGCGNS  S D+YD GYT++++ DFS VVI  M  ++   RP +RW   DML LS     +S D VIDKAAMDALMV+ GD W P   ++  A  MC  V +VL+P G+F+QISF QPHFRK+++ G+
Sbjct:    5 NKEYKNQSYWDSRFASEESYDWLARYNDVADLIVQYVPKSSRILIVGCGNSTFSVDLYDAGYTNIVNLDFSSVVIERMSAKYTESRPLMRWVVGDMLKLSESFGASSFDVVIDKAAMDALMVEGGDTWSPAEHLLAQARDMCTGVQKVLKPDGLFIQISFGQPHFRKRFLLGD 177          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1051.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV70_9PHAE1.590e-8847.26Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A7S2Y3W0_9STRA6.370e-6446.05Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A482S291_9ARCH1.790e-6342.29Class I SAM-dependent methyltransferase n=1 Tax=ar... [more]
A0A836CL89_9STRA3.480e-5449.01S-adenosyl-L-methionine-dependent methyltransferas... [more]
B5Y4M4_PHATC6.420e-5253.53Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A2H3JC97_WOLCO1.520e-5147.87S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A1X6N749_9APHY1.880e-5145.74Methyltransf_11 domain-containing protein n=3 Tax=... [more]
A0A225WNN2_9STRA1.860e-5040.08Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A7S3GQV7_9STRA3.610e-5039.19Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
T0S8X2_SAPDV1.190e-4950.87Methyltransf_11 domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1051contigC-tenellus_contig1051:11060..12863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJW5
Preferred nameECE2
PFAMsMethyltransf_11,Methyltransf_25,Methyltransf_31,Peptidase_M13,Peptidase_M13_N
Model size1661
Max annot lvl2759|Eukaryota
KEGG koko:K01415
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006464,GO:0006479,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008233,GO:0008237,GO:0008276,GO:0008757,GO:0009987,GO:0010002,GO:0010467,GO:0010817,GO:0012505,GO:0012506,GO:0016020,GO:0016278,GO:0016279,GO:0016485,GO:0016486,GO:0016740,GO:0016741,GO:0016787,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0030133,GO:0030154,GO:0030658,GO:0030659,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032259,GO:0032501,GO:0032502,GO:0034641,GO:0035051,GO:0036211,GO:0042445,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0048863,GO:0048869,GO:0051604,GO:0060322,GO:0065007,GO:0065008,GO:0070011,GO:0071704,GO:0072359,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0140096,GO:1901564
Exons2
Evalue8.46e-91
EggNOG OGsKOG2352@1|root,KOG2352@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-10_000720.1
EC3.4.24.71
Descriptionmethyltransferase activity
Cds size1035
COG categoryS
BRITEko00000,ko01000,ko01002,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.638026-UTR-C-tenellus_contig1051:11059..116081680789135.638026-UTR-C-tenellus_contig1051:11059..11608Choristocarpus tenellus KU2346UTRC-tenellus_contig1051 11060..11608 -
1680789135.6747983-UTR-C-tenellus_contig1051:12786..128631680789135.6747983-UTR-C-tenellus_contig1051:12786..12863Choristocarpus tenellus KU2346UTRC-tenellus_contig1051 12787..12863 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.6514778-CDS-C-tenellus_contig1051:11608..125111680789135.6514778-CDS-C-tenellus_contig1051:11608..12511Choristocarpus tenellus KU2346CDSC-tenellus_contig1051 11609..12511 -
1680789135.6617675-CDS-C-tenellus_contig1051:12654..127861680789135.6617675-CDS-C-tenellus_contig1051:12654..12786Choristocarpus tenellus KU2346CDSC-tenellus_contig1051 12655..12786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1051.5.1prot_C-tenellus_contig1051.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1051 11609..12786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1051.5.1

>prot_C-tenellus_contig1051.5.1 ID=prot_C-tenellus_contig1051.5.1|Name=mRNA_C-tenellus_contig1051.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=345bp
MSDCDSISSSDSSDGQPQQEIDWISLESQLIGGTLAALQDHFQQAKDREP
NEEGKSNIGNGKVSPVFEDVIPTSNKVYKHREYWDHRFETEEHYDWLLAY
VDLRDHIRRTVARTARVVVVGCGNSNLSADMYDDGYTSLLSTDFSEVVIN
AMRQRHEHERPGLRWERMDMLDLSIEDASVDAVIDKAAMDALMVDEGDVW
HPEASVIELADRMCREVARVLRPGGVFLQISFAQPHFRKKYISGEHATCR
ARECAVQGVDIPSKSIIEERGFGCDCDNNSTAVRENSPVQSRYDWSLESF
EVQREGGCFGHFVYVMKKYQMEENEDTWSTGEGSVVFPSSELEM*
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mRNA from alignment at C-tenellus_contig1051:11060..12863-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1051.5.1 ID=mRNA_C-tenellus_contig1051.5.1|Name=mRNA_C-tenellus_contig1051.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1804bp|location=Sequence derived from alignment at C-tenellus_contig1051:11060..12863- (Choristocarpus tenellus KU2346)
GGTAATACTTGAAATAATTTTCGTGGTTGCTATTTGGTGCCTCTCCAATA CATCTGACTTTGGGTTGAACAAGGTAGATGAGTGACTGCGACTCCATCAG CAGTTCAGACAGTAGTGATGGACAACCTCAACAGGAGATAGACTGGATAT CCTTAGAGTCACAGCTCATCGGTGGTACCCTTGCTGCCCTCCAAGACCAT TTTCAACAGGTGCAGCATTGTTGATTCCCACACAACAGACGATAATCTTT GTTTTCTGGAGCACCTCTAGTAAATATCGCTTGACCCACCCATATCAACA TACTAATCAATTTTCAATACGCCGTGGATTATATGTTCCTGTAACGTTGC AGGCTAAGGACAGAGAGCCGAACGAGGAAGGCAAGAGCAACATTGGTAAT GGGAAGGTTTCTCCTGTCTTTGAAGATGTCATCCCCACCTCAAACAAGGT ATACAAGCATCGAGAGTACTGGGACCACCGCTTCGAGACTGAGGAGCACT ATGACTGGCTTTTGGCCTATGTCGATCTTCGAGATCATATCAGGCGGACA GTTGCCCGGACTGCGCGTGTCGTGGTTGTTGGGTGCGGAAACAGCAACCT CAGTGCAGACATGTACGATGACGGCTACACGTCATTGCTCAGTACAGATT TTTCAGAAGTGGTGATAAATGCGATGCGGCAACGCCACGAGCACGAACGA CCAGGTCTGAGATGGGAGCGCATGGACATGCTCGATCTCAGTATTGAAGA TGCAAGCGTTGATGCAGTCATAGACAAGGCGGCCATGGATGCCCTCATGG TCGACGAAGGTGATGTTTGGCATCCAGAGGCATCGGTCATCGAACTGGCG GACCGCATGTGCCGGGAAGTTGCCCGCGTACTGCGACCCGGGGGTGTTTT TTTACAGATATCGTTTGCTCAACCCCACTTCCGAAAAAAATATATTTCAG GCGAGCACGCAACGTGCCGTGCACGAGAATGTGCGGTTCAAGGTGTTGAC ATCCCCAGCAAATCCATCATTGAAGAGAGAGGATTTGGGTGTGATTGTGA TAACAACAGTACTGCGGTCAGGGAAAATTCTCCAGTACAATCTCGATATG ACTGGTCTTTGGAAAGTTTTGAGGTACAGCGGGAGGGCGGGTGCTTTGGA CACTTTGTTTATGTCATGAAGAAATATCAAATGGAGGAGAATGAGGATAC ATGGAGTACAGGAGAAGGGTCTGTGGTGTTCCCAAGCTCAGAACTCGAAA TGTAGGCATAAGGAATCTAGGAACCTCAAAAGTCTGCAGTATCAAACTTC AATATGGTCTCTGATCTACCTGTAGAAGCCCAGACCACTCCTCCCGTAGC TGATTCAAAAGCTGCTACGAGTATTGTTGTAATATAGTTTTTGCATTTTC TTTTGGAGTACGAGTTTATACACAGCAGGCAATGCATACACTCAACCTTG TTGCAAACAATTTTGAGGGTTTTGAGTTTTAGGTCCTCCATTAATGAACT TCTATGAAAATTAGTTAGTGCTAATGGTATTAGTTGAATCCTTGGTGTGT GACTCTACCTTTGCAAAAACAATCCAACTGTTGTATTGTCTTTCAGACAT ATTGGTCTAGAAACAAAAGAACTCTTCGAGTTGAGCACTCACTCTTGTTC CAGCTGGTGAGGAGTAATATTGATGATATTACTGCACGTAGTACAGTTTA CTAAATACCCTAGATAGACTTGTTATTGCAGCAACTACCAGTTATAAATA TATTCTGAAAAATTGCTGTATCTATGGCGTGGACAATCCAGCGCATCTTT GGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig1051:11060..12863-

>mRNA_C-tenellus_contig1051.5.1 ID=mRNA_C-tenellus_contig1051.5.1|Name=mRNA_C-tenellus_contig1051.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1035bp|location=Sequence derived from alignment at C-tenellus_contig1051:11060..12863- (Choristocarpus tenellus KU2346)
ATGAGTGACTGCGACTCCATCAGCAGTTCAGACAGTAGTGATGGACAACC
TCAACAGGAGATAGACTGGATATCCTTAGAGTCACAGCTCATCGGTGGTA
CCCTTGCTGCCCTCCAAGACCATTTTCAACAGGCTAAGGACAGAGAGCCG
AACGAGGAAGGCAAGAGCAACATTGGTAATGGGAAGGTTTCTCCTGTCTT
TGAAGATGTCATCCCCACCTCAAACAAGGTATACAAGCATCGAGAGTACT
GGGACCACCGCTTCGAGACTGAGGAGCACTATGACTGGCTTTTGGCCTAT
GTCGATCTTCGAGATCATATCAGGCGGACAGTTGCCCGGACTGCGCGTGT
CGTGGTTGTTGGGTGCGGAAACAGCAACCTCAGTGCAGACATGTACGATG
ACGGCTACACGTCATTGCTCAGTACAGATTTTTCAGAAGTGGTGATAAAT
GCGATGCGGCAACGCCACGAGCACGAACGACCAGGTCTGAGATGGGAGCG
CATGGACATGCTCGATCTCAGTATTGAAGATGCAAGCGTTGATGCAGTCA
TAGACAAGGCGGCCATGGATGCCCTCATGGTCGACGAAGGTGATGTTTGG
CATCCAGAGGCATCGGTCATCGAACTGGCGGACCGCATGTGCCGGGAAGT
TGCCCGCGTACTGCGACCCGGGGGTGTTTTTTTACAGATATCGTTTGCTC
AACCCCACTTCCGAAAAAAATATATTTCAGGCGAGCACGCAACGTGCCGT
GCACGAGAATGTGCGGTTCAAGGTGTTGACATCCCCAGCAAATCCATCAT
TGAAGAGAGAGGATTTGGGTGTGATTGTGATAACAACAGTACTGCGGTCA
GGGAAAATTCTCCAGTACAATCTCGATATGACTGGTCTTTGGAAAGTTTT
GAGGTACAGCGGGAGGGCGGGTGCTTTGGACACTTTGTTTATGTCATGAA
GAAATATCAAATGGAGGAGAATGAGGATACATGGAGTACAGGAGAAGGGT
CTGTGGTGTTCCCAAGCTCAGAACTCGAAATGTAG
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