mRNA_C-tenellus_contig1051.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1051.1.1
Unique NamemRNA_C-tenellus_contig1051.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Match: D7FJW4_ECTSI (Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJW4_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 6.940e-63
Identity = 157/360 (43.61%), Postives = 195/360 (54.17%), Query Frame = 3 
Query:    6 SNEIIDSGISTLARALEMDRGNRFEEAVELYGAGIELLLRGARGQT-EDRKTTILSEAERHITRAEELKATL----ASGHTAKANNHSNQRGQGGAAI----------------------NTSGRGRGFRSSGRGRIPSNGNLGGDKKVAVPGAS-----------------------YRGRGGQGRGGTLPNARSTVVTGVSRGQGKGDLGAREEKKGSEPTELEAKILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPDIFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYVGEGEKMVRALFSAARRRQPAVIFLDEVRGAVQ-----EHAVDR 920
            ++ +IDSGI+TL RA  MD+  + EEA  LY +GI+LLL+GAR +  E R+ T+++EA  H++RAE +K  L    +   T  A+      G+G AA+                      +  G     RSSG G+  +    G        GA+                           G   R               +                     LE KILE++LDSSPGVTWD IAGLEYAKQ LQE VILP LRPD+FTGLRAPA+G+LLYGPPGTGKTMLAKAVATESGY+FFNISASSLTSKYVGEGEKMVRALF+ AR R+PAV+F+DE+   +      EH   R
Sbjct:   19 NDALIDSGIATLERATSMDKQGQLEEAFTLYESGIDLLLQGARQEPGEQRRQTLINEARVHMSRAEHIKLALGPPQSPSPTRPASTGRRDSGKGKAALLRPKPTAADVRGGLRGGSIDAGSPDGENHAPRSSGGGKSSAYTRGGARXXXGGIGAASXXXXXXXXXXXXXXXXXXXXXXXXXXGASTRXXXXXXXXXXXAGSAAAXXXXXXXXXXXXXXXXXXXXLENKILEDMLDSSPGVTWDSIAGLEYAKQTLQETVILPNLRPDLFTGLRAPARGVLLYGPPGTGKTMLAKAVATESGYAFFNISASSLTSKYVGEGEKMVRALFAVAREREPAVVFIDEIDSVLSARGEGEHEASR 378
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BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Match: W7TPY6_9STRA (Fidgetin-like 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPY6_9STRA)

HSP 1 Score: 195 bits (496), Expect = 6.920e-52
Identity = 136/317 (42.90%), Postives = 184/317 (58.04%), Query Frame = 3 
Query:    9 NEIIDSGISTLARALEMDRGNRFEEAVELYGAGIELLLRGARGQTEDRKTTILSEAERHITRAEELKA--TLASGHTAKANNH---SNQRGQGGAAINTSGRGRGFRSSGRGRIPSNGNLGGDKKVAVPGASYRGRGGQGRGGTLPNARSTVVTGVSRGQGKGDLGAREEKKGSEP---TELEAKILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPDIFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYVGEGEKMVRALFSAARRRQPAVIFLDEVRGAV-----QEHAVDR 920
            N  +   +    RA+E+D   R EEA  LY   + LLL   + Q       I   A +++TRAEE+    TL    T ++ N     + R       +T G  +G  S+    +P+     G +    P   Y   GG+ R G    A S    G + G G+   G      G+ P   ++LEA ++EE+LD SPGVTW+ I+GLE AK  LQEAV+LP LRPD+F GLRAP +G+LL+GPPGTGKT+LAKAVA+E+G++FF+ISASSL SK++GEGEKMVRALF  ARR QP+V+F+DE+   +     QEH   R
Sbjct:   35 NPSVQRALQVAQRAVELDECGRAEEAFPLYQEAVALLLAAVK-QDRAGNDQIKRAANKYLTRAEEIDRLLTLRKQQTKESPNSRLKKDARSNNFPLASTKGLEKGRASA---AVPT-----GSRMPRRP-DDYDYTGGRARKGEGGAAVSHGSVGRAGGMGERSGGNTLSSTGARPGRASDLEAIVMEEMLDRSPGVTWEQISGLEDAKHTLQEAVVLPNLRPDLFKGLRAPPRGVLLFGPPGTGKTLLAKAVASETGFAFFSISASSLVSKFLGEGEKMVRALFQVARREQPSVVFIDEIDSMLGQRKDQEHEATR 341
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BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Match: A0A835YKR4_9STRA (Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR4_9STRA)

HSP 1 Score: 190 bits (482), Expect = 9.530e-51
Identity = 98/136 (72.06%), Postives = 113/136 (83.09%), Query Frame = 3 
Query:  531 EAKILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPDIFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYVGEGEKMVRALFSAARRRQPAVIFLDEV------RGAVQEHAVDR 920
            +A I+EELLD SPGV WD IAGL  AKQ LQEAVILP LRPD+FTGLRAP +G+LLYGPPGTGKTMLAKAVATES ++FF+ISASSLTSKYVGEGEK+VRALF AAR R+P+V+F+DE+      RGA +  A  R
Sbjct:  122 QAIIMEELLDRSPGVVWDDIAGLAEAKQTLQEAVILPNLRPDLFTGLRAPPRGVLLYGPPGTGKTMLAKAVATESNFTFFSISASSLTSKYVGEGEKLVRALFRAARARRPSVVFVDEIDSLLSARGAGEHEASRR 257
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BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Match: A0A482STW3_9ARCH (AAA family ATPase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STW3_9ARCH)

HSP 1 Score: 187 bits (475), Expect = 6.480e-50
Identity = 93/139 (66.91%), Postives = 111/139 (79.86%), Query Frame = 3 
Query:  519 PTELEAKILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPDIFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYVGEGEKMVRALFSAARRRQPAVIFLDEVRGAVQ-----EHAVDR 920
            P E  A+ILEE+LD SPGV W  IAGL +AKQ LQEAVILP LRPD+FTGLR P KG+LL+GPPGTGKT+LAKAVATESG++FF+ISA+S+TSKY+GEGEK++RA+F  AR RQPAVIF DE+   +      EH   R
Sbjct:  204 PNEYSAQILEEMLDKSPGVHWADIAGLAFAKQTLQEAVILPNLRPDLFTGLRRPPKGVLLFGPPGTGKTLLAKAVATESGFAFFSISAASVTSKYLGEGEKLMRAVFETARERQPAVIFFDEIDALMSSRKDNEHEASR 342
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BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Match: W2PQ37_PHYPN (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PQ37_PHYPN)

HSP 1 Score: 179 bits (455), Expect = 1.540e-48
Identity = 88/116 (75.86%), Postives = 104/116 (89.66%), Query Frame = 3 
Query:  540 ILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPDIFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYVGEGEKMVRALFSAARRRQPAVIFLDEV 887
            IL+E+LD SPGV W  IAGLE AKQ+LQEAVILPTLRPD+FTGLRAP +G+LL+GPPGTGKT+LAKAVATE+  +FFNISASSLTSK+VGEGEK+VRALF  AR  QP+V+F+DE+
Sbjct:  122 ILDEVLDHSPGVHWTDIAGLEIAKQILQEAVILPTLRPDLFTGLRAPPRGVLLFGPPGTGKTLLAKAVATEAKATFFNISASSLTSKWVGEGEKLVRALFEMARELQPSVVFMDEI 237
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BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Match: H3G5M8_PHYRM (AAA domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5M8_PHYRM)

HSP 1 Score: 178 bits (452), Expect = 8.420e-48
Identity = 86/116 (74.14%), Postives = 104/116 (89.66%), Query Frame = 3 
Query:  540 ILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPDIFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYVGEGEKMVRALFSAARRRQPAVIFLDEV 887
            IL+E++D SPGV W  IAGL+ AKQ+LQEAVILPTLRPD+FTGLRAP +G+LL+GPPGTGKT+LAKAVATE+  +FFNISASSLTSK+VGEGEK+VRALF  AR  QP+V+F+DE+
Sbjct:    4 ILDEVMDHSPGVHWTDIAGLDVAKQILQEAVILPTLRPDLFTGLRAPPRGVLLFGPPGTGKTLLAKAVATEANATFFNISASSLTSKWVGEGEKLVRALFEMARELQPSVVFMDEI 119
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BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Match: A0A7S3GW27_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GW27_9STRA)

HSP 1 Score: 184 bits (466), Expect = 9.600e-48
Identity = 91/137 (66.42%), Postives = 110/137 (80.29%), Query Frame = 3 
Query:  525 ELEAKILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPDIFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYVGEGEKMVRALFSAARRRQPAVIFLDEVRGAVQ-----EHAVDR 920
            E EA+ILE +LD SP V WD IAGL YAKQ LQEAVILP LRPD+FTGLR+P KG+LL+GPPGTGKT+LAKAVA+ESG+ FF+ISASS+TSKY+GEGEK+++ALF  AR +QP+VIF DE+   +      EH   R
Sbjct:  192 EYEAQILEGMLDKSPNVRWDDIAGLAYAKQTLQEAVILPNLRPDLFTGLRSPPKGVLLFGPPGTGKTLLAKAVASESGFCFFSISASSVTSKYLGEGEKLIKALFEIAREQQPSVIFFDEIDALMSVRKENEHEASR 328
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BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Match: A0A225WZC1_9STRA (Vesicle-fusing ATPase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZC1_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.260e-47
Identity = 116/285 (40.70%), Postives = 160/285 (56.14%), Query Frame = 3 
Query:   36 TLARALEMDRGNRFEEAVELYGAGIE-LLLRGARGQTEDRKTTILSEAERHITRAEELKATLASGHTAKANNHSNQRGQGGAAINTSGRGRGFRSSGRGRIPSNGNLGGDKKVAVPGASYRGRGGQGRGGTLPNARSTVVTGVSRGQGKGDLGAREEKKGSEPTELEAKILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPDIFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYVGEGEKMVRALFSAARRRQPAVIFLDEV 887
            T+  A+  D+  +++EAV+LY +GIE ++ + ++ QTE+ KT +  +   ++ RAE LK  +   H  K                                         ++   P    + R          NAR+T       G  K            +  +    IL+E+LD SPGV W  IAGL+ AKQ++QEAVILPTLRPD+FTGLRAP +G+LL+GPPGTGKT+LAKA+ATE+  +FFNISASSLTSK+VGEGEK+VRALF  AR  QP+V+F+DE+
Sbjct:   15 TIEAAVAADKAGKYQEAVDLYASGIEKMMAQLSQLQTEEDKTQLRQKINEYMVRAEYLKEWVGE-HARKQQT--------------------------------------QEAVAPSTQEKER----------NARTTTGQQHRAGYSK------------QHAQHAHTILDEVLDHSPGVHWKDIAGLDVAKQIVQEAVILPTLRPDLFTGLRAPPRGVLLFGPPGTGKTLLAKAIATEANATFFNISASSLTSKWVGEGEKLVRALFEMARELQPSVVFMDEI 238
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BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Match: W2MPP9_PHYPR (AAA domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2MPP9_PHYPR)

HSP 1 Score: 179 bits (455), Expect = 1.900e-47
Identity = 88/116 (75.86%), Postives = 104/116 (89.66%), Query Frame = 3 
Query:  540 ILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPDIFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYVGEGEKMVRALFSAARRRQPAVIFLDEV 887
            IL+E+LD SPGV W  IAGLE AKQ+LQEAVILPTLRPD+FTGLRAP +G+LL+GPPGTGKT+LAKAVATE+  +FFNISASSLTSK+VGEGEK+VRALF  AR  QP+V+F+DE+
Sbjct:   72 ILDEVLDHSPGVHWTDIAGLEIAKQILQEAVILPTLRPDLFTGLRAPPRGVLLFGPPGTGKTLLAKAVATEAKATFFNISASSLTSKWVGEGEKLVRALFEMARELQPSVVFMDEI 187
[Close]
BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Match: A0A2P4YIG4_9STRA (Vesicle-fusing ATPase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YIG4_9STRA)

HSP 1 Score: 179 bits (455), Expect = 9.910e-47
Identity = 87/116 (75.00%), Postives = 104/116 (89.66%), Query Frame = 3 
Query:  540 ILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPDIFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYVGEGEKMVRALFSAARRRQPAVIFLDEV 887
            IL+E+LD SPGV W  IAGL+ AKQ+LQEAVILPTLRPD+FTGLRAP +G+LL+GPPGTGKT+LAKAVATE+  +FFNISASSLTSK+VGEGEK+VRALF  AR  QP+V+F+DE+
Sbjct:  142 ILDEVLDHSPGVHWTNIAGLDVAKQILQEAVILPTLRPDLFTGLRAPPRGVLLFGPPGTGKTLLAKAVATEANATFFNISASSLTSKWVGEGEKLVRALFEMARELQPSVVFMDEI 257
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1051.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJW4_ECTSI6.940e-6343.61Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=287... [more]
W7TPY6_9STRA6.920e-5242.90Fidgetin-like 1 n=2 Tax=Monodopsidaceae TaxID=4250... [more]
A0A835YKR4_9STRA9.530e-5172.06Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxI... [more]
A0A482STW3_9ARCH6.480e-5066.91AAA family ATPase n=1 Tax=archaeon TaxID=1906665 R... [more]
W2PQ37_PHYPN1.540e-4875.86Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
H3G5M8_PHYRM8.420e-4874.14AAA domain-containing protein n=1 Tax=Phytophthora... [more]
A0A7S3GW27_9STRA9.600e-4866.42Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A225WZC1_9STRA1.260e-4740.70Vesicle-fusing ATPase n=1 Tax=Phytophthora megakar... [more]
W2MPP9_PHYPR1.900e-4775.86AAA domain-containing protein n=8 Tax=Phytophthora... [more]
A0A2P4YIG4_9STRA9.910e-4775.00Vesicle-fusing ATPase n=1 Tax=Phytophthora palmivo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1051contigC-tenellus_contig1051:481..4576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJW4
Preferred nameYTA6
PFAMsAAA,Vps4_C
Model size1813
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K01509,ko:K13254,ko:K20293
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000166,GO:0000226,GO:0000287,GO:0001578,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005856,GO:0005938,GO:0005940,GO:0006139,GO:0006163,GO:0006282,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007346,GO:0008017,GO:0008092,GO:0008144,GO:0008150,GO:0008152,GO:0008568,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010569,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0030427,GO:0030554,GO:0031097,GO:0031323,GO:0032153,GO:0032155,GO:0032156,GO:0032161,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0035838,GO:0035840,GO:0035841,GO:0036094,GO:0036391,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045787,GO:0045931,GO:0046034,GO:0046483,GO:0046872,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0051013,GO:0051052,GO:0051171,GO:0051286,GO:0051726,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0080090,GO:0080134,GO:0080135,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0140096,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:2000779,GO:2001020
Exons5
Evalue2.99e-61
EggNOG OGsCOG0464@1|root,KOG0740@2759|Eukaryota
EC3.6.1.3,3.6.4.3
DescriptionBelongs to the AAA ATPase family
Cds size870
COG categoryO
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1051.1.1prot_C-tenellus_contig1051.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1051 1368..4520 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.50417-UTR-C-tenellus_contig1051:480..13671680789135.50417-UTR-C-tenellus_contig1051:480..1367Choristocarpus tenellus KU2346UTRC-tenellus_contig1051 481..1367 -
1680789135.5857-UTR-C-tenellus_contig1051:4520..45761680789135.5857-UTR-C-tenellus_contig1051:4520..4576Choristocarpus tenellus KU2346UTRC-tenellus_contig1051 4521..4576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.5221767-CDS-C-tenellus_contig1051:1367..15821680789135.5221767-CDS-C-tenellus_contig1051:1367..1582Choristocarpus tenellus KU2346CDSC-tenellus_contig1051 1368..1582 -
1680789135.5411215-CDS-C-tenellus_contig1051:2076..22251680789135.5411215-CDS-C-tenellus_contig1051:2076..2225Choristocarpus tenellus KU2346CDSC-tenellus_contig1051 2077..2225 -
1680789135.5513577-CDS-C-tenellus_contig1051:2527..27721680789135.5513577-CDS-C-tenellus_contig1051:2527..2772Choristocarpus tenellus KU2346CDSC-tenellus_contig1051 2528..2772 -
1680789135.5624406-CDS-C-tenellus_contig1051:3672..39081680789135.5624406-CDS-C-tenellus_contig1051:3672..3908Choristocarpus tenellus KU2346CDSC-tenellus_contig1051 3673..3908 -
1680789135.5738876-CDS-C-tenellus_contig1051:4495..45201680789135.5738876-CDS-C-tenellus_contig1051:4495..4520Choristocarpus tenellus KU2346CDSC-tenellus_contig1051 4496..4520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1051.1.1

>prot_C-tenellus_contig1051.1.1 ID=prot_C-tenellus_contig1051.1.1|Name=mRNA_C-tenellus_contig1051.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=290bp
MDRGNRFEEAVELYGAGIELLLRGARGQTEDRKTTILSEAERHITRAEEL
KATLASGHTAKANNHSNQRGQGGAAINTSGRGRGFRSSGRGRIPSNGNLG
GDKKVAVPGASYRGRGGQGRGGTLPNARSTVVTGVSRGQGKGDLGAREEK
KGSEPTELEAKILEELLDSSPGVTWDGIAGLEYAKQMLQEAVILPTLRPD
IFTGLRAPAKGILLYGPPGTGKTMLAKAVATESGYSFFNISASSLTSKYV
GEGEKMVRALFSAARRRQPAVIFLDEVRGAVQEHAVDRA*
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mRNA from alignment at C-tenellus_contig1051:481..4576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1051.1.1 ID=mRNA_C-tenellus_contig1051.1.1|Name=mRNA_C-tenellus_contig1051.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4096bp|location=Sequence derived from alignment at C-tenellus_contig1051:481..4576- (Choristocarpus tenellus KU2346)
TTGCAAGTAATGAGATAATTGATTCTGGAATATCAACTCTTGCAAGAGCA
TTGGAAATGGACAGAGGAAATCGATTCGAAGGTGTGAGGGAGTTGGGAGT
TAAGGGTAAGATTGTCATCTTGAGTAGAGAACAGGGTATCAGGTCGGCTT
TACGAGGGTGGTGGATATGAACGAGATGGACTTAGAAGGTTCCATCCTTC
AGCGGGGATTGCTGCAGAAAGGGTTGATGCTTGTAATCTTGTTCAAGATG
TCTATCGCAGAGAGCAAGCTTATCTAGTTGATCGCCATTTTAAAATACTT
GGACAGGGACAAAGTTGTTGACCCGTAGCATCTTTTTCCACGGGCACTCT
CGTTCCGTTATGTTGAAATGGAGGTTTAAGCATATTCTTGCTATCATATC
TTGTCTGCGATGGTATTCCTCATGTGACCCATTTACGTAACAGACAACCG
AGGTCTGAAGTACTGACTAGACCTTCAAGTTGTTTATTATCCTCCACTTG
AACGCTGTTCGCTTCATGATATTGATTTCGTCAAGAGCTCATAAATAAGT
CTTGGGATGCTTCAGTGCGGAAACTTCAAGCAAAGTCCGAATGGGAACAA
CTGTCGAGACCTCGTCACCCACCCCCCACCTCCAACATTTCGTCTCACCC
CTTGGTTCCTATGGTAAGAGGCCGTTGAACTATATGGAGCAGGGATTGAG
CTCTTGCTTCGAGGAGCCCGAGGACAAACCGAAGATCGCAAGACGACCAT
CCTAAGCGAGGCTGAGAGGCATATTACTCGGGCGGAGGAGCTCAAGGCCA
CCCTGGCAAGCGGCCACACTGCCAAGGCGAACAACCATTCGAATCAGAGG
GGTCAGGGGGGCGCTGCAATAAATACTTCCGGCAGGGGCAGAGGTTTTAG
GTCGGTGAGTCTCCTAGTATATTCGGCAAGAGGGTGAGGGGACAGGGAGG
TCTTCGAAGAAGTGGAACTTTCCTGTAGTCTACAGGTACCAGCACAATTG
CAGCTTTAGGTAGGGTGTGCAAGCAGCAAGGTGAAGGGTCTTCAGTACTA
CCTAGATCCTTGGAGAAAAAGAGGGATCCTGCTGCCGTGTTGATGACAGA
TGGAGAGAGGTTTGTGAAGTTTGTAGAGGGTAGTCTGATGATTCTTGTGA
CAAAGAATCGTTCGCCCTTAACGCAAGACTACGTACGAGCTTGTGTTGTG
ACTATCTCCGTCCGTAGGGTGCAGTGGAGTCGTTTGCTATCCCCTTCTCT
ACTGTCACTGCCAGTGAGATGTGCTGGGCTGGTGCTTTGCTGCTTGCAGG
AGTGCTTCTGGATCAACTCATGGATCGCTGAAGGGAGGACCTCTCTACCT
TATTTATACAACCCCTGTTTTTGAATGCCTTGTAATAGTGTGCCTCTTAC
AATTTGCATGGCCACTAGTATACTAGTTTCTGATACACTACTGTCCTTCC
CCCTTTTCATACGTTTAAAGCCAAATTGATCTTTCCTTTTGTGTTTCCTT
GGCCTTGATCCAGATGTGAGTGAGCCTTCACAAAATGCTGTAAGAATGAG
TACCTTCTCACAATTAATTTCGTTTCAATCTTTATTTGTAATGTAAGACA
TGTACTCACTAGATTAGCGTTAGGTTTAGGTTTAGGTTTAGGTTTAGGTT
TAGGGTGAAGTTAGGGCTAAGGCTTTATATTCACAGATGTAGTACCTCCG
TCCTTCCAAAGAGTAAACAGTACATTTGCCATGGATGAATAGTGCAAGGT
ATGCAGCTCCCCTCATCAGTCATCTCTGCTTCCCATATCCTTGGACGTTA
CAAGAGTGGGCGTGGACGCATACCGAGCAATGGAAACCTGGGTGGTGACA
AAAAGGTTGCTGTGCCAGGTGCAAGTTACAGGGGAAGAGGGGGGCAGGGG
AGAGGAGGAACCTTGCCAAATGCTCGCAGTACTGTAGTGACTGGAGTGAG
CCGAGGCCAGGGCAAAGGAGACTTAGGGGCTAGGGAGGAAAAGAAGGGCT
CAGAGCCAACCGAGCTGGAGGCTAAGATCCTGGAGGAGTTGCTGGACAGG
TAGGTGTGATGGGGGGAGTGTATTGTATTGCTCTGAATGGACTTTTTTTG
TAAAGGTCAATCAATGCCTTCCATGTTGCGGAAGCTTCAATCAGGGATTG
TTGACACTTTTGTGCTCTGATAGAGGATTGTATTTGTGTTCAGCAGTGGG
TATAGAGATCACGAGGAGGCGTTCTCTCCCTGAGTAGCCAGTCCACATGG
CCCCCACCTGTCCCCTCATTCCATTCTCCCTGGGCACCCCTTCCTCCCAA
CCTCCTCTACTCTACCAAATTTTATCTCTTACTGTCCTGTGACGATGTAA
GCTCGCCTGGAGTTACGTGGGATGGCATTGCTGGGCTTGAGTATGCGAAG
CAGATGCTTCAAGAGGCAGTTATCCTTCCCACACTGCGACCGGACATTTT
CACGGGGCTCAGGGCTCCCGCAAAGGGGATTCTGCTCTATGGGCCACCAG
GTAGTAGGGGACATGAAATGTATTACCACTTGTCTCTGTCTTTGCTAGTG
TGTGTCGTTGGGGAAGAATATATGTAACTCTCAAGGATCTCTTCCTACTA
CTTGTGAATGTGTATTGTGTACTCTGAAGTAAGTGTGGAGTTGCGCGGTT
AATTACACTTTTGAATATGTGAGGATGCCGATTGATTGGGTTGGGTGGGG
GGAGGTGGACGGACGGGCAAGTGCTGTTGTCATCTTTTAAAAAAAAACTG
TTCTGAGATTATAACTGAGATGATCTATTGCGAGTTTTCATCTCGAGGAC
CTCACCGTAGGAAGAGAGAAAAAAAATCACGAGTAGGATATTTTAAAAAT
TCAAGAATTATTTGTACTCGTACTACCATTTTTTTTTTTGTCCACCTCCC
TTCCCCTCCCCTCCCCTCCTCTCCCCTACAATGAGGAACCAACGTTTTTA
TTTATTTTTTATTTGTTTATTTTTTGTTCCAATCGTTAATTCAGGGACTG
GGAAGACAATGCTTGCCAAGGCTGTTGCCACGGAGAGCGGTTATTCTTTC
TTTAACATTTCTGCATCGTCATTGACATCCAAGTACGTGGGGGAGGGGGA
AAAGATGGTGCGGGCACTGTTCTCGGCAGCAAGGAGGAGGCAACCTGCTG
TGATATTTCTGGATGAGGTGAGAGGTGCAGTTCAGGAACATGCCGTGGAC
AGAGCTTGAGTGTTGCGAATCTTATATTCCATTTTTCGAATCTTATATTC
CATGTGGTAGGGATTGCTCGAAACCGAACATTGAGGTGGTGATTTTTTTT
TTATTGGGAGGTTATTTTGCACACGAGTGTGTGTGCGTCATGTGATTATT
GCACCAAGCATTTTGGTCGTGAAGCCTGAGCATTTTTCATGCGTCTGTGA
TTGTGCGTTGCACGCAGGTATCTATTATTAATTGTCTTTTGAGTATGTGG
GGATATTTTAATGCCCCAGTTGTTTTTAGCTTCAACGTACACAGCAATTT
AAGTTTTGATTCACTACAGCAATAGAGCCAGTGCTCTTCTGAAGTGTGGA
AGTGGAAATGTGGATTTGATCATGAGACAGCAGAAGCCTGTTGAAGATTG
GCATGTGGTAATTGGAGGGTATTCAGTGCCGTGACAATATGAGGTATGTA
TGTATACTTTTACTCTTGAAGGTGTAGTAGTATGGTCTTAGTAGGCCAGC
ATGGTGTTGTCGGTTTTGATTGTGATTGGGTTACTAATTAAAATGCGAAT
ATTTGAAAAAAAAAATCACCTGAACTAGTGATCGGATTTAAGTGGGGGGT
TGACACTGAGTTTGAAAGGGCCGTGTGATTTGCCTTGTGACAGTATCATG
TGTTTTCAGCAACGTGGAAGGCTTTTTCATTGTACTGTGTGATCAGAGGT
AATCTTCTTGTGCATTTGCGTCCCGCTTGCTTGGATGGTTTTGCATCAAC
CCTGTAGTAACTAACTACCCTTAGCTCTTAATTTTCCTTGCCCCTTCAAC
TGTGACTCCTCTAGTGATCTTATCTTGTTGTTCTCGAAATGTGGATGTAT
GTGTGTTGTTTTGGGGTTTGGTGCTTTGTGCCCAGTTATTGGGGTC
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Coding sequence (CDS) from alignment at C-tenellus_contig1051:481..4576-

>mRNA_C-tenellus_contig1051.1.1 ID=mRNA_C-tenellus_contig1051.1.1|Name=mRNA_C-tenellus_contig1051.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=870bp|location=Sequence derived from alignment at C-tenellus_contig1051:481..4576- (Choristocarpus tenellus KU2346)
ATGGACAGAGGAAATCGATTCGAAGAGGCCGTTGAACTATATGGAGCAGG
GATTGAGCTCTTGCTTCGAGGAGCCCGAGGACAAACCGAAGATCGCAAGA
CGACCATCCTAAGCGAGGCTGAGAGGCATATTACTCGGGCGGAGGAGCTC
AAGGCCACCCTGGCAAGCGGCCACACTGCCAAGGCGAACAACCATTCGAA
TCAGAGGGGTCAGGGGGGCGCTGCAATAAATACTTCCGGCAGGGGCAGAG
GTTTTAGGTCGAGTGGGCGTGGACGCATACCGAGCAATGGAAACCTGGGT
GGTGACAAAAAGGTTGCTGTGCCAGGTGCAAGTTACAGGGGAAGAGGGGG
GCAGGGGAGAGGAGGAACCTTGCCAAATGCTCGCAGTACTGTAGTGACTG
GAGTGAGCCGAGGCCAGGGCAAAGGAGACTTAGGGGCTAGGGAGGAAAAG
AAGGGCTCAGAGCCAACCGAGCTGGAGGCTAAGATCCTGGAGGAGTTGCT
GGACAGCTCGCCTGGAGTTACGTGGGATGGCATTGCTGGGCTTGAGTATG
CGAAGCAGATGCTTCAAGAGGCAGTTATCCTTCCCACACTGCGACCGGAC
ATTTTCACGGGGCTCAGGGCTCCCGCAAAGGGGATTCTGCTCTATGGGCC
ACCAGGGACTGGGAAGACAATGCTTGCCAAGGCTGTTGCCACGGAGAGCG
GTTATTCTTTCTTTAACATTTCTGCATCGTCATTGACATCCAAGTACGTG
GGGGAGGGGGAAAAGATGGTGCGGGCACTGTTCTCGGCAGCAAGGAGGAG
GCAACCTGCTGTGATATTTCTGGATGAGGTGAGAGGTGCAGTTCAGGAAC
ATGCCGTGGACAGAGCTTGA
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