mRNA_C-tenellus_contig10508.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10508.2.1
Unique NamemRNA_C-tenellus_contig10508.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Match: D8LT21_ECTSI (Polyketide_cyc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT21_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.040e-42
Identity = 73/116 (62.93%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 SVAALCMFYC---AFGKDAKGPHPHNGMVKPYQPGPPSFTLTKRQLSDLEEGKLVEDMLKGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNYDTETLRN 339
            ++ A CM +    A G  A   HPH G VKPY+PG P   LTK+Q +DL+ G LV+DMLKG+  EDGGK GRALAVQDV+AP EYVWDRI DF NY  MVPKV EC NY+TETLRN
Sbjct:   25 TMGAACMLFLPGVAQGSAAAEAHPHQGKVKPYKPGMPDIVLTKKQRTDLDGGDLVQDMLKGETDEDGGKGGRALAVQDVNAPAEYVWDRILDFGNYNKMVPKVTECKNYETETLRN 140          
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Match: A0A835Z7Q3_9STRA (Polyketide_cyc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q3_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.430e-28
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   55 PHPHNGMVKPYQPGPPSFTLTKRQLSDLEEGKLVEDMLKGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNYDTETLRN 339
            PHPH G+  PY PG P   L  + +  L +GKLV+   K      GG AGRALAVQD+ APP+YVWDRI DF NY  MVPKVV+C NY+ ET RN
Sbjct:   22 PHPHQGLSDPYPPGKPETELASKDIQLLRDGKLVQQSFKK-----GGGAGRALAVQDLHAPPDYVWDRILDFGNYPKMVPKVVKCNNYEVETFRN 111          
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Match: B8C054_THAPS (Polyketide_cyc domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C054_THAPS)

HSP 1 Score: 90.5 bits (223), Expect = 2.830e-19
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = 1
Query:    1 SVAALCMFYCAFGKDAKGPHPHNGMVKPYQPGPPSFTLTKRQLSDLEEGKLVEDMLKGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNY 318
            ++A LC  Y A   +   PH H G V+P+QPG P   L  + +S L+ GK  +  ++      G   GR L VQDVDAP   VW+RI D++NY NMVPK +E  NY
Sbjct:   13 TIALLCTPY-ANASNFNKPHSHTGKVEPFQPGDPKIKLDSKAMSILKAGKPYQTQVQS-----GSAGGRGLVVQDVDAPTSIVWERILDYDNYSNMVPKTIESKNY 112          
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Match: A0A4D9DD14_9STRA (Polyketide_cyc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DD14_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.360e-19
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   64 HNGMVKPYQPGPPSFTLTKRQLSDLEEGKLVEDMLKGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNY 318
            HNG+VKP++PGPPS  L K ++  L +G+ V+  L        G  GR L +QDV+APPE VW RI DF  Y  MVP+V  C NY
Sbjct:   37 HNGLVKPFKPGPPSIRLKKTEVEKLRKGEAVKQQLSS------GSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENY 115          
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Match: A0A7R9WQF3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQF3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.190e-17
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   40 KDAKGPHPHNGMVKPYQPGPPSFTLTKRQLSDLEEGKLVEDMLKGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNYDTETLRNVS 345
            KD   PHPH G++KPYQPGP    L      +L+ GK V   +K    + G   G A+ VQDVDAP E VW +I D++ YK  V KV E  NY  +  R+ S
Sbjct:   32 KDRHAPHPHQGLLKPYQPGPFDLKLDSSDEKNLQAGKAV---MKQSMPKPGDLGGGAICVQDVDAPREAVWSQILDYDKYKGKVAKVNEAKNYFVKQNRDGS 130          
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Match: A0A2D7HYI8_9DELT (Polyketide_cyc domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D7HYI8_9DELT)

HSP 1 Score: 78.2 bits (191), Expect = 2.580e-15
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    4 VAALCMFYCAFGKDAKGPHPHNGMVKPYQPGPPSFTLTKRQLSDLEEGKLVEDMLKGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNY 318
            V  L +   A   D + PHPH G+V P++  PP  TL++++ S L  G+ V  ML+    E+ G  GR  AV+DV APP+ VW+RI  F+ Y  MVP++ E   Y
Sbjct:   17 VGLLLVSMAAQAADPEQPHPHQGIVPPFEGAPPRVTLSEKEESRLARGEAVLTMLE----EESG--GRGTAVRDVKAPPKVVWERIGAFDEYSQMVPRMSEAEVY 115          
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Match: K0SW72_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SW72_THAOC)

HSP 1 Score: 78.6 bits (192), Expect = 1.270e-14
Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   55 PHPHNGMVKPYQPGPPSFTLTKRQLSDLEEGKLVEDMLKGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNY 318
            PH H G + P+QPG P   L  +  + L  GK  +  ++  +    G  GR L VQDVDAP   VW+RI D++NY NMVPK  E  NY
Sbjct:  201 PHAHKGKLVPFQPGDPKVKLDGKAKNILRSGKPYQTQVQTSD----GAGGRGLVVQDVDAPTSIVWERILDYDNYANMVPKTAESKNY 284          
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Match: A0A7S0I6R2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I6R2_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 1.370e-13
Identity = 44/99 (44.44%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   43 DAKGPHPHNGMVKPYQPGPPSFTLTKRQLSDLEEGKLVEDMLKGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNYDTETLRN 339
            DA  PH + G+  P+    P  +LT  + + L  G+ V   +   N    GK GRALAVQDV A PE VW+RI  F  Y  MV  V EC  YDT T RN
Sbjct:   39 DASKPHMNGGVNPPFASAKPQVSLTGSEETALAAGRAVTRQVANAN----GKGGRALAVQDVAASPETVWNRILAFPEYPKMVTGVQECSVYDTSTHRN 133          
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Match: A0A7S1ULP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1ULP3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.880e-13
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   55 PHPHNGMVKPYQPGP-PSFTLTKRQLSDLEEGKLVEDMLKGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNY 318
            PHPH G++KP++PGP  S +L  +  + L +G  V  M + + S+ G   G A+ VQDV AP + VW++I   ++YK  V KV+EC NY
Sbjct:  105 PHPHQGLLKPHEPGPFASLSLKAKDEATLAKGNSV--MKQDEISKKGSDGGGAICVQDVQAPTDAVWNQILRMDDYKGKVGKVLECKNY 191          
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Match: A0A7S3QJ75_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ75_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.690e-13
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   58 HPHNGMVKPYQPGPPSFTLTKRQLSDLEEGKLVEDMLKGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNYDTE 327
            H HNG++ PY PG  +  +  +    L +G  V   L   N  +G   G+A+ VQD+DAP + VW +I D ++Y   V KV EC NY  E
Sbjct:   36 HTHNGLLTPYSPGAFNMKMESKDEEILGKGNSVMKNLPADNDPEGKLGGKAICVQDIDAPKKAVWRQILDMDSYVGKVSKVKECNNYSVE 125          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10508.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LT21_ECTSI3.040e-4262.93Polyketide_cyc domain-containing protein n=2 Tax=E... [more]
A0A835Z7Q3_9STRA3.430e-2856.84Polyketide_cyc domain-containing protein n=1 Tax=T... [more]
B8C054_THAPS2.830e-1943.40Polyketide_cyc domain-containing protein n=1 Tax=T... [more]
A0A4D9DD14_9STRA4.360e-1949.41Polyketide_cyc domain-containing protein n=2 Tax=M... [more]
A0A7R9WQF3_9STRA5.190e-1744.12Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A2D7HYI8_9DELT2.580e-1540.95Polyketide_cyc domain-containing protein n=1 Tax=D... [more]
K0SW72_THAOC1.270e-1444.32Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0I6R2_9EUKA1.370e-1344.44Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S1ULP3_9STRA4.880e-1342.70Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S3QJ75_9STRA8.690e-1338.89Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10508contigC-tenellus_contig10508:4182..5470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LT21
PFAMsPolyketide_cyc
Model size351
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.66e-42
EggNOG OGs2C4R1@1|root,2S3Y7@2759|Eukaryota
Ec32 ortholog descriptionStreptomyces cyclase/dehydrase
Ec32 orthologEc-08_003850.1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.3042707-UTR-C-tenellus_contig10508:4181..41991680789135.3042707-UTR-C-tenellus_contig10508:4181..4199Choristocarpus tenellus KU2346UTRC-tenellus_contig10508 4182..4199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.3210201-CDS-C-tenellus_contig10508:4199..42621680789135.3210201-CDS-C-tenellus_contig10508:4199..4262Choristocarpus tenellus KU2346CDSC-tenellus_contig10508 4200..4262 +
1680789135.3417602-CDS-C-tenellus_contig10508:4517..45891680789135.3417602-CDS-C-tenellus_contig10508:4517..4589Choristocarpus tenellus KU2346CDSC-tenellus_contig10508 4518..4589 +
1680789135.3560443-CDS-C-tenellus_contig10508:4814..49491680789135.3560443-CDS-C-tenellus_contig10508:4814..4949Choristocarpus tenellus KU2346CDSC-tenellus_contig10508 4815..4949 +
1680789135.3664064-CDS-C-tenellus_contig10508:5407..54701680789135.3664064-CDS-C-tenellus_contig10508:5407..5470Choristocarpus tenellus KU2346CDSC-tenellus_contig10508 5408..5470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10508.2.1prot_C-tenellus_contig10508.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10508 4200..5470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10508.2.1

>prot_C-tenellus_contig10508.2.1 ID=prot_C-tenellus_contig10508.2.1|Name=mRNA_C-tenellus_contig10508.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=111bp
MFYCAFGKDAKGPHPHNGMVKPYQPGPPSFTLTKRQLSDLEEGKLVEDML
KGKNSEDGGKAGRALAVQDVDAPPEYVWDRIKDFNNYKNMVPKVVECYNY
DTETLRNVSR*
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mRNA from alignment at C-tenellus_contig10508:4182..5470+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10508.2.1 ID=mRNA_C-tenellus_contig10508.2.1|Name=mRNA_C-tenellus_contig10508.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1289bp|location=Sequence derived from alignment at C-tenellus_contig10508:4182..5470+ (Choristocarpus tenellus KU2346)
TCAGTTGCTGCCCTGTGCATGTTCTACTGTGCATTCGGCAAGGATGCCAA AGGACCTCACCCCCATAACGGCATGGTTAAGGTGCGGATTCTGTAGTAGT GTCCAGCACTTAGAGATAGAGACTCCTCTTCTCTACTGCTCAACATGGGA GCAGGAGAGTGAGGTTAGCGTCATTGCCCACTCACAACCGTCTTCGACCA AACGTTAGGGGTCTGTCCAGACCCTCCCCACTTCTTTCTGTGACTGTCTC TGCCTCTCGCTCCCTCGTAGCTTGCCCTATCCTTTATATGCCACCATCTC TCGAACCTTTGTGTGCCTGAACTCCATGTGCCTCAGCCGTACCAGCCGGG ACCGCCATCCTTCACTCTCACCAAACGCCAGCTGTCTGATCTTGAAGAGG GAAAATTGGTAGGTCCGGCATGGTCTATTCACAGAGTTTTGCAAGCTTGA AGAATCTCGGAAAGCTTCGATTTCGAGTATGTATTCTCCTCAACCTTGAG CTACTCCACGGTCAAGCCTCTCAAGTTTAGAATGACTCCATGACCCCCTT CAGCAGATCTTTGCACAACCCATTGATTTTTCCTTATGGAGGTAAGCCTT CCAATTCTCTCCTTGTCCTTCTCTCTCTTTAAGGTAGAGGATATGTTAAA AGGGAAGAATTCGGAGGATGGTGGAAAGGCCGGCCGTGCACTTGCAGTAC AGGATGTAGATGCACCTCCCGAGTATGTATGGGACCGCATCAAGGACTTC AACAACTACAAGAACATGGTAAGTGATTAAATGGTTCAGAGAAGGTTGGT TGGGACTGAAATGATGATGAAACAGGTGTAACTGTAACTTCCCTCACTCT TGAATTTCTGAATGTGCCTTGTTTTGTTAAAAGAGTAAAGACTGGAGTCA TTCTTAGTCACGGTACTTGATTACGTCCCACTAAATCGTGCGTTTTGGTT GTGGCAATGGCAGTTGGGTGAGGTACTGTAATAGTTTGCACAGAACTTGG AAACAACCTCTGCTATGGTTCCTAAATGAAGCTCACATCAAAAAATGCTC TTACCCCCAGCCTTGGTGGGTCACTTCCTAAATAAGGGCAATATTTGTGG TACCATTTTTAACACCATGTCCTTCTGTGACAAACTGCAGTTCAAAGGGA TTCCCACTGCTTTACCCAGCCTCCCCCCCTGAATTACTCTCACTGCCATG CTACAACTGCACTGTGCCTTCTGCAGGTGCCCAAAGTGGTTGAGTGCTAC AACTATGACACAGAGACCCTTAGAAATGTGAGTCGTTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10508:4182..5470+

>mRNA_C-tenellus_contig10508.2.1 ID=mRNA_C-tenellus_contig10508.2.1|Name=mRNA_C-tenellus_contig10508.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=333bp|location=Sequence derived from alignment at C-tenellus_contig10508:4182..5470+ (Choristocarpus tenellus KU2346)
ATGTTCTACTGTGCATTCGGCAAGGATGCCAAAGGACCTCACCCCCATAA
CGGCATGGTTAAGCCGTACCAGCCGGGACCGCCATCCTTCACTCTCACCA
AACGCCAGCTGTCTGATCTTGAAGAGGGAAAATTGGTAGAGGATATGTTA
AAAGGGAAGAATTCGGAGGATGGTGGAAAGGCCGGCCGTGCACTTGCAGT
ACAGGATGTAGATGCACCTCCCGAGTATGTATGGGACCGCATCAAGGACT
TCAACAACTACAAGAACATGGTGCCCAAAGTGGTTGAGTGCTACAACTAT
GACACAGAGACCCTTAGAAATGTGAGTCGTTAA
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