mRNA_C-tenellus_contig10506.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10506.1.1
Unique NamemRNA_C-tenellus_contig10506.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10506.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10506contigC-tenellus_contig10506:4486..5201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog391612.CY0110_24121
PFAMsDUF2103
Model size288
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.92e-10
EggNOG OGsCOG4031@1|root,COG4031@2|Bacteria,1G7XS@1117|Cyanobacteria,3KIDX@43988|Cyanothece
Ec32 ortholog descriptionProtein of unknown function DUF2103, metal-binding
Ec32 orthologEc-08_000280.1
DescriptionPredicted metal-binding protein (DUF2103)
Cds size288
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.1681576-CDS-C-tenellus_contig10506:4485..45851680789135.1681576-CDS-C-tenellus_contig10506:4485..4585Choristocarpus tenellus KU2346CDSC-tenellus_contig10506 4486..4585 +
1680789135.1798863-CDS-C-tenellus_contig10506:4821..49691680789135.1798863-CDS-C-tenellus_contig10506:4821..4969Choristocarpus tenellus KU2346CDSC-tenellus_contig10506 4822..4969 +
1680789135.1883788-CDS-C-tenellus_contig10506:5161..52011680789135.1883788-CDS-C-tenellus_contig10506:5161..5201Choristocarpus tenellus KU2346CDSC-tenellus_contig10506 5162..5201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10506.1.1prot_C-tenellus_contig10506.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10506 4486..5201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10506.1.1

>prot_C-tenellus_contig10506.1.1 ID=prot_C-tenellus_contig10506.1.1|Name=mRNA_C-tenellus_contig10506.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=96bp
LDGLLPLLEALVDDSKASKKISTIVPARIYRCKGHSELFKLRLRPAMNGF
KGMVRKGHTAQDVFFSTTTMDEEELKASLQLQLAAGFDLEVGGSCR
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mRNA from alignment at C-tenellus_contig10506:4486..5201+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10506.1.1 ID=mRNA_C-tenellus_contig10506.1.1|Name=mRNA_C-tenellus_contig10506.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=716bp|location=Sequence derived from alignment at C-tenellus_contig10506:4486..5201+ (Choristocarpus tenellus KU2346)
CTTGATGGACTGCTCCCCCTCCTGGAGGCACTAGTGGATGACTCCAAGGC
CTCAAAGAAGATTTCAACGATAGTTCCGGCGCGGATATACCGCTGTAAAG
GTGAACTTTGAAGTTAAATGAGCAAGTTTGTGGCCGATTCTGTGGAGCAC
AACGTTTGTCGGAAGACACCTCCCAGTTTTTGTAGGTTTTAACAAGGTTT
GCGTACAGGTTCGGGATGCGTTATAGTCACGGCATTGCCATATAATTCAT
CATACAAAATTTATACTGTAGGGTCTTCCTTCTAACCCCTCTAACCTTCA
CCAACACGATATGCCTCTCGACCACGAGCCCAACAGGGCACTCCGAGTTG
TTCAAACTTCGACTTCGCCCAGCGATGAACGGCTTTAAGGGGATGGTCAG
AAAAGGTCACACTGCACAGGACGTTTTCTTCAGCACTACTACGATGGACG
AAGAAGAGCTCAAGGCAAGTTTGCAATTGCAATTGTCTATACCCATGGAG
GCATCCATGTTCCCGGACGTGTGTACAAGAGTACAACTGCAGACAATGAA
TCATTTTAACATATCTACAGACAGTATGGCACAGCAACATTGGTTGAACT
CGATCCATCCCCGCCGCTTCAAAATCCCTACTATTGTCTTCTATCATCTC
CTGCCTGAACAGGATGCGTTGAACAGGGCAGCAGGCTTTGATCTTGAAGT
TGGGGGTTCTTGCAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10506:4486..5201+

>mRNA_C-tenellus_contig10506.1.1 ID=mRNA_C-tenellus_contig10506.1.1|Name=mRNA_C-tenellus_contig10506.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=288bp|location=Sequence derived from alignment at C-tenellus_contig10506:4486..5201+ (Choristocarpus tenellus KU2346)
CTTGATGGACTGCTCCCCCTCCTGGAGGCACTAGTGGATGACTCCAAGGC
CTCAAAGAAGATTTCAACGATAGTTCCGGCGCGGATATACCGCTGTAAAG
GGCACTCCGAGTTGTTCAAACTTCGACTTCGCCCAGCGATGAACGGCTTT
AAGGGGATGGTCAGAAAAGGTCACACTGCACAGGACGTTTTCTTCAGCAC
TACTACGATGGACGAAGAAGAGCTCAAGGCAAGTTTGCAATTGCAATTGG
CAGCAGGCTTTGATCTTGAAGTTGGGGGTTCTTGCAGG
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