mRNA_C-tenellus_contig10496.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10496.1.1
Unique NamemRNA_C-tenellus_contig10496.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Match: A0A2N9J8U9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J8U9_FAGSY)

HSP 1 Score: 62.8 bits (151), Expect = 1.280e-8
Identity = 50/173 (28.90%), Postives = 76/173 (43.93%), Query Frame = 1
Query:    7 EEWILDSAASCHVTNMITHMTNYKPCIGHERVVTASQNSFC-IAGHGDLIILFPSRDNKEVEILLQNVAHVPNLGFNLFSCQAAADKG--------------AKGIFTVSTFSLFDGRATL------------SIGGKQYTMIIRDDYSRFVWLYFLRAKSDAAEAFKKYLVM 444
            ++W++DSAAS HVT      T+YK   G+   V     S+  I G GD+ +      N    + L++V H+P++  NL S      +G               KG+  ++  SL      L            S+GG +Y +   DD SR VW+Y L+ K    + FKK+  M
Sbjct:  268 KQWVIDSAASYHVTPRREFFTSYKA--GNLGRVKMGNKSYADIVGIGDICV----ETNTGYTLKLKDVRHIPDMRLNLISVSVLDKEGYESHLGNGGWLTLSEKGLQILAKKSLIPFAKDLVYSDVCGPIEVKSLGGNRYFVTFIDDASRKVWVYVLKTKDQVFQLFKKFHAM 434          
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Match: UPI0007381C27 (uncharacterized protein LOC107046418 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007381C27)

HSP 1 Score: 59.3 bits (142), Expect = 1.620e-7
Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    7 EEWILDSAASCHVTNMITHMTNYKPCIGHERVVTASQNSFCIAGHGDLIILFPSRDNKE-VEILLQNVAHVPNLGFNLFSCQAAADKGAKGIFTVSTFSLFDGRATLSIGGKQ 342
            E+W LDSAAS H++       N +P    E+++         +  GD+ +L  + D +E V   +QN+ +VP++ FNLFS +AA DKG   + T +  S    R T++I  ++
Sbjct:  235 EDWYLDSAASSHMSPRKEWFVNLEPLNFPEQIMIGDGKVIIRSARGDINVL--AYDGEEWVPKHIQNILYVPDIRFNLFSTEAATDKGLLHVATSTGASFKRNRETVAIRERE 345          
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.860e-7
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 1
Query:  313 RATLSIGGKQYTMIIRDDYSRFVWLYFLRAKSDAAEAFKKYL 438
            +A +S+GGK Y MI++DD++R  W+YFLR KSDAA AF+ +L
Sbjct:  339 KAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFL 380          
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.730e-6
Identity = 22/38 (57.89%), Postives = 32/38 (84.21%), Query Frame = 1
Query:  325 SIGGKQYTMIIRDDYSRFVWLYFLRAKSDAAEAFKKYL 438
            S+GGK Y MI++DD++R  W+YFL++KSDAA AF+ +L
Sbjct:  645 SVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFL 682          
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.780e-6
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1
Query:  313 RATLSIGGKQYTMIIRDDYSRFVWLYFLRAKSDAAEAFKKYL 438
            +   SIGGK Y MI++DD++R  W+YFLR+KSDA  AF+ +L
Sbjct:  486 KGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFL 527          
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.790e-6
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1
Query:  313 RATLSIGGKQYTMIIRDDYSRFVWLYFLRAKSDAAEAFKKYL 438
            +   SIGGK Y MI++DD++R  W+YFLR+KSDA  AF+ +L
Sbjct:  462 KGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFL 503          
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.210e-6
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  325 SIGGKQYTMIIRDDYSRFVWLYFLRAKSDAAEAFKKYL 438
            S+GGK YT+I++DDY+R+  +YFL+ KSDAAEAF++YL
Sbjct:   49 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYL 86          
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Match: A0A6H5GIV9_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GIV9_9HEMI)

HSP 1 Score: 56.2 bits (134), Expect = 2.230e-6
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   13 WILDSAASCHVTNMITHMTNYKPCIGHERVVTASQNSFCIAGHGDLIILFPSRDNKEVEILLQNVAHVPNLGFNLFSCQAAADKGAKGIF 282
            W++DSAAS H+T     +TN       + V+ A+      A  GD+ I+F   D  + E+++ NV++VP+L  NL S  A   KG + IF
Sbjct:   83 WLVDSAASGHMTGRKDWLTNSSTANSGQTVLLANGQQLTTAESGDVHIVF---DGNDEEMVISNVSYVPDLNVNLLSVDALVKKGHEVIF 169          
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Match: A0A6H5KKV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.570e-6
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1
Query:  310 GRA-TLSIGGKQYTMIIRDDYSRFVWLYFLRAKSDAAEAFKKYL 438
            GRA  LS+GGK YT+++RDD +R+  +YFL+ KSDAAEAF++YL
Sbjct:   34 GRARVLSLGGKWYTLVVRDDCTRWNRVYFLKNKSDAAEAFERYL 77          
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Match: A0A6H5JYF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.230e-6
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  325 SIGGKQYTMIIRDDYSRFVWLYFLRAKSDAAEAFKKYL 438
            S+GGK YT+I++DDY+R+  +YFL+ KSDAAEAF++YL
Sbjct:  183 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYL 220          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10496.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9J8U9_FAGSY1.280e-828.90Integrase catalytic domain-containing protein n=1 ... [more]
UPI0007381C271.620e-732.74uncharacterized protein LOC107046418 n=1 Tax=Diach... [more]
A0A6H5JB16_9PHAE2.860e-757.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE1.730e-657.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K622_9PHAE1.780e-654.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE1.790e-654.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7U9_9PHAE2.210e-663.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5GIV9_9HEMI2.230e-635.56Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKV4_9PHAE2.570e-661.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYF9_9PHAE3.230e-663.16Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10496contigC-tenellus_contig10496:4440..5237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5270.UM03188P0
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size444
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.7e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3V2N5@5204|Basidiomycota
DescriptionRetrotransposon gag protein
Cds size444
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789134.633048-CDS-C-tenellus_contig10496:4439..47511680789134.633048-CDS-C-tenellus_contig10496:4439..4751Choristocarpus tenellus KU2346CDSC-tenellus_contig10496 4440..4751 +
1680789134.6424234-CDS-C-tenellus_contig10496:5105..52371680789134.6424234-CDS-C-tenellus_contig10496:5105..5237Choristocarpus tenellus KU2346CDSC-tenellus_contig10496 5106..5237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10496.1.1prot_C-tenellus_contig10496.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10496 4440..5237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10496.1.1

>prot_C-tenellus_contig10496.1.1 ID=prot_C-tenellus_contig10496.1.1|Name=mRNA_C-tenellus_contig10496.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=148bp
EREEWILDSAASCHVTNMITHMTNYKPCIGHERVVTASQNSFCIAGHGDL
IILFPSRDNKEVEILLQNVAHVPNLGFNLFSCQAAADKGAKGIFTVSTFS
LFDGRATLSIGGKQYTMIIRDDYSRFVWLYFLRAKSDAAEAFKKYLVM
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mRNA from alignment at C-tenellus_contig10496:4440..5237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10496.1.1 ID=mRNA_C-tenellus_contig10496.1.1|Name=mRNA_C-tenellus_contig10496.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=798bp|location=Sequence derived from alignment at C-tenellus_contig10496:4440..5237+ (Choristocarpus tenellus KU2346)
GAGAGAGAAGAATGGATTTTGGACAGTGCGGCTTCATGTCATGTAACCAA TATGATAACTCACATGACTAATTACAAGCCTTGCATTGGACATGAAAGGG TAGTCACCGCCAGCCAAAATTCCTTTTGCATCGCTGGTCATGGTGATCTA ATCATCTTGTTTCCGTCACGTGACAACAAGGAGGTAGAAATACTCCTTCA GAATGTCGCACACGTCCCTAATCTAGGATTCAACCTTTTCTCTTGCCAAG CAGCAGCTGACAAGGGTGCAAAAGGCATTTTCACAGTCAGTACATTCTCG CTATTCGATGGAGTACTTAACTTCACCAGAGATCCTGGTTGCCACTACAC CCTCCATGGTCAACACATATTGCCGCGACTATATCGAAATGCTGAAGTTG CTTTAAAGGCCACTATAGCCCCCTTGCTTGCATCCCGTGCTCCCCACACG GAGATCGACATTAACCTCTTTCACCGCTCTTATGACCACGCACACGAGGC ATTGCTCAAGTCCACCGCCACTTCAATGGGCATTACATTGGTGGGTGAGC TGGAGCCATGTGCGGGCTGCTCTATGAGCAAGGGCATACGGAAGGGTGTT TGGTCCAGCACGTCTACAAGGGCGGTAAGAAAGCTGGATCGGGTTTTTGT CGACTTAAGTGGGAAGAGGGCTACCCTTTCAATCGGTGGTAAGCAATACA CCATGATAATCCGGGACGATTATTCTCGTTTTGTTTGGTTGTATTTCCTT CGTGCTAAGTCGGATGCCGCCGAAGCCTTCAAGAAGTACCTGGTCATG
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Coding sequence (CDS) from alignment at C-tenellus_contig10496:4440..5237+

>mRNA_C-tenellus_contig10496.1.1 ID=mRNA_C-tenellus_contig10496.1.1|Name=mRNA_C-tenellus_contig10496.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=444bp|location=Sequence derived from alignment at C-tenellus_contig10496:4440..5237+ (Choristocarpus tenellus KU2346)
GAGAGAGAAGAATGGATTTTGGACAGTGCGGCTTCATGTCATGTAACCAA
TATGATAACTCACATGACTAATTACAAGCCTTGCATTGGACATGAAAGGG
TAGTCACCGCCAGCCAAAATTCCTTTTGCATCGCTGGTCATGGTGATCTA
ATCATCTTGTTTCCGTCACGTGACAACAAGGAGGTAGAAATACTCCTTCA
GAATGTCGCACACGTCCCTAATCTAGGATTCAACCTTTTCTCTTGCCAAG
CAGCAGCTGACAAGGGTGCAAAAGGCATTTTCACAGTCAGTACATTCTCG
CTATTCGATGGAAGGGCTACCCTTTCAATCGGTGGTAAGCAATACACCAT
GATAATCCGGGACGATTATTCTCGTTTTGTTTGGTTGTATTTCCTTCGTG
CTAAGTCGGATGCCGCCGAAGCCTTCAAGAAGTACCTGGTCATG
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