mRNA_C-tenellus_contig10493.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10493.1.1
Unique NamemRNA_C-tenellus_contig10493.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Match: D8LC49_ECTSI (TPR Domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC49_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.990e-33
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 IKGAFCLLDKAKILTGPGQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVGIRYLSKAISIEARCQD-PDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDLATEAL 315
            IK +  LL KA +LT  GQP+L + RLQ RA+TLNN GCLMK WGKPR  +++L++A+ IEA+     DNPAGTH+NMSAALS IGLH++AA HAG A+DLA++A+
Sbjct:   81 IKASVRLLQKASLLTSRGQPFLGKARLQARALTLNNFGCLMKNWGKPRESVKFLARALRIEAKVPGGADNPAGTHVNMSAALSTIGLHREAAMHAGHAIDLASQAM 186          
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Match: A0A7S1H3R9_HEMAN (Hypothetical protein n=6 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H3R9_HEMAN)

HSP 1 Score: 88.2 bits (217), Expect = 3.730e-18
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   10 AFCLLDKAKILTGP-GQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVGIRYLSKAISIEARCQDPDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDLATEAL 315
            +F LL KA+I+T P G    T  RL+ RAITLNNLGC M+R GK    ++YL KA+ IE   +  DNPAGTHLNM A LS +  H  A  HA  A+ L  +A+
Sbjct:   82 SFELLKKAEIVTEPRGLIRDTMTRLKMRAITLNNLGCFMRRRGKLHSALQYLDKALRIELTVKTVDNPAGTHLNMCAVLSQLNRHAAALQHAQCALQLLEDAV 184          
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Match: A0A7S1CBS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBS2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.660e-14
Identity = 44/97 (45.36%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   19 LLDKAKILTGPGQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVGIRYLSKAISIEARCQDPDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDLATE 309
            LL KA ILT   +          RA+T NNL C  +R GK    + YL KA+ IE+R  D +NPA THLNM A LS +G H  A  HA +A+ L  E
Sbjct:   86 LLKKADILTERDEA--------GRAVTFNNLACYYRRQGKLHASLSYLQKALRIESRLPDCENPADTHLNMCAVLSQLGRHAAALEHAQSALILLQE 174          
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Match: A0A7S3YLC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLC4_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 8.020e-13
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   19 LLDKAKILTGPGQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVGIRYLSKAISIEARCQDPDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDLATEAL 315
            LL KA+ILT   Q        + +A+T NNL C  +R GK    ++YL KA+ IE++ +D +NPA THLN  A LS +G H  A  HA +++ L  E L
Sbjct:  141 LLKKAEILTERDQ--------KGKAVTYNNLACYYRRQGKLHSALQYLQKALKIESKMKDVENPADTHLNTCAVLSQLGRHTSALEHAQSSMILLQEEL 231          
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Match: A0A7S2CPG4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPG4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.790e-12
Identity = 43/99 (43.43%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   19 LLDKAKILTGPGQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVGIRYLSKAISIEARCQDPDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDLATEAL 315
            LL KA+ILT              RA+T NNL C  +R GK    ++YL KA+ IE +    DNPA T+LN  A LS +G HQ A  HA  A+ L  E L
Sbjct:   85 LLKKAEILTERDNA--------GRAVTFNNLACYYRRQGKLHAALQYLQKALKIENKLDQVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEEL 175          
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Match: A0A5A8C0Q3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C0Q3_CAFRO)

HSP 1 Score: 68.9 bits (167), Expect = 2.020e-11
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   19 LLDKAKILTGPGQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVGIRYLSKAISIEARCQDPDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDL 300
            LL KA+ILT              RA+T NNL C  +R G+    +++L KA+SIEAR +   NPA THLN+ A LS +  H +A  HA AA+ L
Sbjct:   86 LLKKAEILT--------ERDAAGRAVTYNNLACYYRRVGRLHAALKFLKKALSIEARLERVTNPADTHLNICAVLSQLSRHAEALRHAQAALRL 171          
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Match: A0A5A8DKN8_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DKN8_CAFRO)

HSP 1 Score: 68.9 bits (167), Expect = 2.100e-11
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   19 LLDKAKILTGPGQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVGIRYLSKAISIEARCQDPDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDL 300
            LL KA+ILT              RA+T NNL C  +R G+    +++L KA+SIEAR +   NPA THLN+ A LS +  H +A  HA AA+ L
Sbjct:   86 LLKKAEILT--------ERDAAGRAVTYNNLACYYRRVGRLHAALKFLKKALSIEARLERVTNPADTHLNICAVLSQLSRHAEALRHAQAALRL 171          
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Match: A0A5A8DFH3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DFH3_CAFRO)

HSP 1 Score: 68.9 bits (167), Expect = 2.130e-11
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   19 LLDKAKILTGPGQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVGIRYLSKAISIEARCQDPDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDL 300
            LL KA+ILT              RA+T NNL C  +R G+    +++L KA+SIEAR +   NPA THLN+ A LS +  H +A  HA AA+ L
Sbjct:   86 LLKKAEILT--------ERDAAGRAVTYNNLACYYRRVGRLHAALKFLKKALSIEARLERVTNPADTHLNICAVLSQLSRHAEALRHAQAALRL 171          
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Match: A0A5A8C5F9_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5F9_CAFRO)

HSP 1 Score: 68.9 bits (167), Expect = 2.170e-11
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   19 LLDKAKILTGPGQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVGIRYLSKAISIEARCQDPDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDL 300
            LL KA+ILT              RA+T NNL C  +R G+    +++L KA+SIEAR +   NPA THLN+ A LS +  H +A  HA AA+ L
Sbjct:   86 LLKKAEILT--------ERDAAGRAVTYNNLACYYRRVGRLHAALKFLKKALSIEARLERVTNPADTHLNICAVLSQLSRHAEALRHAQAALRL 171          
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Match: A0A482SDU3_9ARCH (Tetratricopeptide repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDU3_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 2.170e-11
Identity = 42/99 (42.42%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   19 LLDKAKILTGPGQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVGIRYLSKAISIEARCQDPDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDLATEAL 315
            LL KA+ILT              RA T NNL C  +R GK    ++YL KA+ IE++  +  NPA TH+N  A LS +G HQ A  HA +A+ L  E L
Sbjct:   49 LLKKAEILTEKDPA--------GRAATYNNLACYYRRQGKLHSALQYLQKALKIESKLPNVQNPADTHINACAVLSQLGRHQTALEHAQSALILLQEEL 139          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10493.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LC49_ECTSI2.990e-3360.38TPR Domain containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1H3R9_HEMAN3.730e-1850.49Hypothetical protein n=6 Tax=Hemiselmis andersenii... [more]
A0A7S1CBS2_9STRA5.660e-1445.36Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3YLC4_HETAK8.020e-1342.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2CPG4_9STRA4.790e-1243.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5A8C0Q3_CAFRO2.020e-1143.62Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DKN8_CAFRO2.100e-1143.62Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DFH3_CAFRO2.130e-1143.62Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8C5F9_CAFRO2.170e-1143.62Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A482SDU3_9ARCH2.170e-1142.42Tetratricopeptide repeat protein n=1 Tax=archaeon ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10493contigC-tenellus_contig10493:4728..5042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog55529.EKX41349
PFAMsTPR_12
Model size315
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.11e-20
EggNOG OGs28ZWJ@1|root,2R6RA@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_004460.1
DescriptionTetratricopeptide repeat
Cds size315
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789134.521281-CDS-C-tenellus_contig10493:4727..50421680789134.521281-CDS-C-tenellus_contig10493:4727..5042Choristocarpus tenellus KU2346CDSC-tenellus_contig10493 4728..5042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10493.1.1prot_C-tenellus_contig10493.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10493 4728..5042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10493.1.1

>prot_C-tenellus_contig10493.1.1 ID=prot_C-tenellus_contig10493.1.1|Name=mRNA_C-tenellus_contig10493.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=105bp
IKGAFCLLDKAKILTGPGQPYLTRYRLQTRAITLNNLGCLMKRWGKPRVG
IRYLSKAISIEARCQDPDNPAGTHLNMSAALSGIGLHQKAAFHAGAAVDL
ATEAL
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mRNA from alignment at C-tenellus_contig10493:4728..5042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10493.1.1 ID=mRNA_C-tenellus_contig10493.1.1|Name=mRNA_C-tenellus_contig10493.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=315bp|location=Sequence derived from alignment at C-tenellus_contig10493:4728..5042+ (Choristocarpus tenellus KU2346)
ATCAAGGGCGCTTTCTGTCTGCTTGACAAGGCAAAGATCCTGACAGGGCC GGGGCAGCCTTACCTCACGAGGTACAGGCTTCAAACTCGTGCTATCACTC TCAACAATCTTGGTTGCCTCATGAAACGGTGGGGCAAGCCCCGTGTGGGT ATTCGATATCTCTCAAAAGCCATCAGCATTGAGGCTCGTTGTCAAGACCC TGATAACCCAGCAGGGACCCACCTCAACATGAGCGCTGCTCTCAGCGGTA TTGGTCTGCACCAGAAGGCAGCCTTCCATGCAGGTGCTGCTGTAGACTTA GCTACGGAGGCATTG
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Coding sequence (CDS) from alignment at C-tenellus_contig10493:4728..5042+

>mRNA_C-tenellus_contig10493.1.1 ID=mRNA_C-tenellus_contig10493.1.1|Name=mRNA_C-tenellus_contig10493.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=315bp|location=Sequence derived from alignment at C-tenellus_contig10493:4728..5042+ (Choristocarpus tenellus KU2346)
ATCAAGGGCGCTTTCTGTCTGCTTGACAAGGCAAAGATCCTGACAGGGCC
GGGGCAGCCTTACCTCACGAGGTACAGGCTTCAAACTCGTGCTATCACTC
TCAACAATCTTGGTTGCCTCATGAAACGGTGGGGCAAGCCCCGTGTGGGT
ATTCGATATCTCTCAAAAGCCATCAGCATTGAGGCTCGTTGTCAAGACCC
TGATAACCCAGCAGGGACCCACCTCAACATGAGCGCTGCTCTCAGCGGTA
TTGGTCTGCACCAGAAGGCAGCCTTCCATGCAGGTGCTGCTGTAGACTTA
GCTACGGAGGCATTG
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