mRNA_C-tenellus_contig1049.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1049.3.1
Unique NamemRNA_C-tenellus_contig1049.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1049.3.1 vs. uniprot
Match: D8LBD0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBD0_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.620e-9
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:  808 PPGWQAVKDKSSGDTYYWNKTTGQTTWDTPTK 903
            PPGWQAV DKSSGDTYYWNK TGQTTWD PTK
Sbjct:  276 PPGWQAVPDKSSGDTYYWNKATGQTTWDFPTK 307
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BLAST of mRNA_C-tenellus_contig1049.3.1 vs. uniprot
Match: A0A6H5KKE1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 6.380e-9
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:  808 PPGWQAVKDKSSGDTYYWNKTTGQTTWDTPTK 903
            PPGWQAV DKSSGDTYYWNK TGQTTWD PTK
Sbjct:  860 PPGWQAVPDKSSGDTYYWNKATGQTTWDFPTK 891
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BLAST of mRNA_C-tenellus_contig1049.3.1 vs. uniprot
Match: A0A7S2MJH8_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2MJH8_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 1.150e-5
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:  796 APGLPPGWQAVKDKSSGDTYYWNKTTGQTTWDTPT 900
            AP LPPGW+ V D SSG +YYWN+ T +T+W  PT
Sbjct:   12 APQLPPGWEQVSDPSSGQSYYWNQATSETSWSLPT 46
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1049.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBD0_ECTSI2.620e-990.63WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KKE1_9PHAE6.380e-990.63WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2MJH8_9DINO1.150e-560.00Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1049contigC-tenellus_contig1049:2674..3579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4792.ETI34131
PFAMsWW
Model size906
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.62e-05
EggNOG OGs2CZKT@1|root,2SAU9@2759|Eukaryota,3QFRJ@4776|Peronosporales
DescriptionWW domain
Cds size906
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789134.302028-CDS-C-tenellus_contig1049:2673..35791680789134.302028-CDS-C-tenellus_contig1049:2673..3579Choristocarpus tenellus KU2346CDSC-tenellus_contig1049 2674..3579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1049.3.1prot_C-tenellus_contig1049.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1049 2674..3579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1049.3.1

>prot_C-tenellus_contig1049.3.1 ID=prot_C-tenellus_contig1049.3.1|Name=mRNA_C-tenellus_contig1049.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=302bp
PQREPYPPRPPTSQPSQSQQYPPPAQPPSQQPQPTQQPGAGTPYGGTQPP
VRTQYPTVPPAATPSQDPYGRVPGQAHHPQQQQLQSHQSPQQPPQQSPQQ
PPQQPHQQPPQGQQQPGTQVPGQAQYPYTQQPQQVPMQSRQPPQYSQPPQ
QQTAIQPRQQQSQYGQQAQQLQQPGIYRQPQQQQQQQQQQQQPRQQQPPA
QAHPHPQPGTMSSPLQMQYSQYTAHQQQPLQVPAPAPTPAPVLALAPAPA
PAPIPAPPVVAAPPAAPGLPPGWQAVKDKSSGDTYYWNKTTGQTTWDTPT
K*
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mRNA from alignment at C-tenellus_contig1049:2674..3579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1049.3.1 ID=mRNA_C-tenellus_contig1049.3.1|Name=mRNA_C-tenellus_contig1049.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=906bp|location=Sequence derived from alignment at C-tenellus_contig1049:2674..3579+ (Choristocarpus tenellus KU2346)
CCACAGCGAGAACCCTATCCACCTCGGCCACCAACATCACAGCCATCGCA
GTCTCAGCAATACCCTCCCCCAGCCCAACCACCCTCTCAGCAACCACAAC
CAACACAGCAGCCAGGTGCAGGAACTCCGTATGGTGGGACACAACCACCA
GTCCGTACCCAGTACCCTACTGTACCACCTGCTGCTACACCTAGTCAGGA
TCCATACGGCCGTGTTCCTGGCCAGGCACATCATCCCCAGCAGCAGCAGC
TGCAGTCACATCAGTCACCTCAACAGCCCCCACAACAGTCACCTCAACAA
CCACCACAACAGCCTCATCAGCAGCCACCACAAGGGCAGCAGCAACCTGG
GACACAGGTGCCAGGGCAGGCACAGTATCCCTACACACAACAGCCACAAC
AAGTGCCTATGCAGTCTCGTCAGCCACCCCAGTACAGTCAGCCACCGCAA
CAACAAACAGCCATTCAACCTCGACAGCAGCAGTCACAGTATGGCCAACA
GGCTCAGCAGTTGCAGCAGCCTGGGATATACAGGCAGCCGCAGCAGCAGC
AGCAGCAGCAGCAGCAACAACAACAACCCCGGCAACAGCAACCACCAGCA
CAAGCACACCCACACCCACAACCTGGGACAATGTCTTCACCTTTGCAAAT
GCAGTATAGCCAGTACACTGCACACCAGCAGCAGCCACTGCAGGTGCCTG
CACCCGCTCCAACACCTGCTCCAGTACTGGCGTTGGCACCTGCTCCTGCT
CCTGCTCCAATCCCTGCACCTCCAGTTGTGGCTGCACCCCCTGCAGCACC
GGGTCTGCCGCCAGGATGGCAAGCAGTAAAAGACAAAAGCAGTGGAGATA
CATACTATTGGAACAAGACCACAGGTCAAACCACTTGGGATACTCCAACA
AAGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig1049:2674..3579+

>mRNA_C-tenellus_contig1049.3.1 ID=mRNA_C-tenellus_contig1049.3.1|Name=mRNA_C-tenellus_contig1049.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=906bp|location=Sequence derived from alignment at C-tenellus_contig1049:2674..3579+ (Choristocarpus tenellus KU2346)
CCACAGCGAGAACCCTATCCACCTCGGCCACCAACATCACAGCCATCGCA
GTCTCAGCAATACCCTCCCCCAGCCCAACCACCCTCTCAGCAACCACAAC
CAACACAGCAGCCAGGTGCAGGAACTCCGTATGGTGGGACACAACCACCA
GTCCGTACCCAGTACCCTACTGTACCACCTGCTGCTACACCTAGTCAGGA
TCCATACGGCCGTGTTCCTGGCCAGGCACATCATCCCCAGCAGCAGCAGC
TGCAGTCACATCAGTCACCTCAACAGCCCCCACAACAGTCACCTCAACAA
CCACCACAACAGCCTCATCAGCAGCCACCACAAGGGCAGCAGCAACCTGG
GACACAGGTGCCAGGGCAGGCACAGTATCCCTACACACAACAGCCACAAC
AAGTGCCTATGCAGTCTCGTCAGCCACCCCAGTACAGTCAGCCACCGCAA
CAACAAACAGCCATTCAACCTCGACAGCAGCAGTCACAGTATGGCCAACA
GGCTCAGCAGTTGCAGCAGCCTGGGATATACAGGCAGCCGCAGCAGCAGC
AGCAGCAGCAGCAGCAACAACAACAACCCCGGCAACAGCAACCACCAGCA
CAAGCACACCCACACCCACAACCTGGGACAATGTCTTCACCTTTGCAAAT
GCAGTATAGCCAGTACACTGCACACCAGCAGCAGCCACTGCAGGTGCCTG
CACCCGCTCCAACACCTGCTCCAGTACTGGCGTTGGCACCTGCTCCTGCT
CCTGCTCCAATCCCTGCACCTCCAGTTGTGGCTGCACCCCCTGCAGCACC
GGGTCTGCCGCCAGGATGGCAAGCAGTAAAAGACAAAAGCAGTGGAGATA
CATACTATTGGAACAAGACCACAGGTCAAACCACTTGGGATACTCCAACA
AAGTAG
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