mRNA_C-tenellus_contig10489.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10489.1.1
Unique NamemRNA_C-tenellus_contig10489.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Match: A0A6H5K232_9PHAE (eIF2B_5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K232_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 4.250e-46
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 
Query:   10 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALRNAIK 240
            GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRD VSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALRNA+K
Sbjct:  182 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALRNAVK 258
[Close]
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Match: A0A836CND3_9STRA (Eukaryotic initiation factor 2 beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND3_9STRA)

HSP 1 Score: 152 bits (385), Expect = 6.340e-45
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   10 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALRNAIK 240
            GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRD VSRL FVHCQDCGSSRSVAP+RSGFHAQTRADRRA+RNA+K
Sbjct:  154 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLHFVHCQDCGSSRSVAPVRSGFHAQTRADRRAIRNAVK 230
[Close]
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Match: A0A7S2D5T9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D5T9_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.840e-42
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:   10 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALR 228
            GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRD VSRLFF+HCQDCGSSRSVAPIR GFHAQTRADRRA+R
Sbjct:  148 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDSVSRLFFMHCQDCGSSRSVAPIRQGFHAQTRADRRAMR 220
[Close]
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Match: A0A7S2SBF4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBF4_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.060e-40
Identity = 66/73 (90.41%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:   10 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALR 228
            GKYVPKYIESLLRKYIVEYVTCQMCRSPNT+LTRD VSRL+F++CQDCGSSRSVAPIR+GFHAQTRADRRA+R
Sbjct:  156 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTSLTRDSVSRLYFINCQDCGSSRSVAPIRAGFHAQTRADRRAMR 228
[Close]
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Match: F0XZH3_AURAN (eIF2B_5 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZH3_AURAN)

HSP 1 Score: 139 bits (349), Expect = 1.990e-40
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:   10 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRR 219
            GKYVPKYIESLLRKYIVEYVTCQMCRSP+T+LTRD VSRLFF+HCQDCGSSRSVAPIR+GFHAQTRADRR
Sbjct:   85 GKYVPKYIESLLRKYIVEYVTCQMCRSPSTSLTRDSVSRLFFLHCQDCGSSRSVAPIRAGFHAQTRADRR 154
[Close]
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Match: M4B8Q4_HYAAE (eIF2B_5 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8Q4_HYAAE)

HSP 1 Score: 137 bits (344), Expect = 1.790e-39
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   10 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALR 228
            G+YVPKYIESLLRKYI EYV+CQMCRSPNTTLTRD VSRL+FVHCQDCGSSRSVA IRSGFHA TRADRRA R
Sbjct:   96 GRYVPKYIESLLRKYITEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFHAATRADRRAAR 168
[Close]
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Match: A0A5D6XJH0_9STRA (eIF2B_5 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJH0_9STRA)

HSP 1 Score: 137 bits (345), Expect = 7.260e-39
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:   10 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALR 228
            G+YVPKYIESLLRKYI+EYV+CQMCRSPNTTLTRD VSRL+FVHCQDCGSSRSVA IRSGFHA TRADRRA R
Sbjct:  158 GRYVPKYIESLLRKYIMEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFHAATRADRRAAR 230
[Close]
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Match: H3GGU4_PHYRM (eIF2B_5 domain-containing protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3GGU4_PHYRM)

HSP 1 Score: 137 bits (344), Expect = 1.080e-38
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   10 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALR 228
            G+YVPKYIESLLRKYI EYV+CQMCRSPNTTLTRD VSRL+FVHCQDCGSSRSVA IRSGFHA TRADRRA R
Sbjct:  160 GRYVPKYIESLLRKYITEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFHAATRADRRAAR 232
[Close]
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Match: A0A662XXW3_9STRA (eIF2B_5 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXW3_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.170e-38
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   10 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALR 228
            G+YVPKYIESLLRKYI EYV+CQMCRSPNTTLTRD VSRL+FVHCQDCGSSRSVA IRSGFHA TRADRRA R
Sbjct:  163 GRYVPKYIESLLRKYITEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFHAATRADRRAAR 235
[Close]
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Match: A0A2D4BXT7_PYTIN (Eukaryotic translation initiation factor 2 subunit beta n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXT7_PYTIN)

HSP 1 Score: 137 bits (345), Expect = 1.290e-38
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   10 GKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALR 228
            G+YVPKYIESLLRKYI EYVTCQMCRSPNTTLTRD VSRL+FVHCQDCGSSRSV+ IRSGFHA TRADRRA R
Sbjct:  180 GRYVPKYIESLLRKYITEYVTCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVSAIRSGFHAATRADRRAAR 252
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10489.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K232_9PHAE4.250e-4697.40eIF2B_5 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CND3_9STRA6.340e-4593.51Eukaryotic initiation factor 2 beta subunit n=1 Ta... [more]
A0A7S2D5T9_9STRA1.840e-4294.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SBF4_9STRA1.060e-4090.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0XZH3_AURAN1.990e-4092.86eIF2B_5 domain-containing protein (Fragment) n=1 T... [more]
M4B8Q4_HYAAE1.790e-3989.04eIF2B_5 domain-containing protein n=1 Tax=Hyaloper... [more]
A0A5D6XJH0_9STRA7.260e-3989.04eIF2B_5 domain-containing protein n=1 Tax=Pythium ... [more]
H3GGU4_PHYRM1.080e-3889.04eIF2B_5 domain-containing protein n=21 Tax=Peronos... [more]
A0A662XXW3_9STRA1.170e-3889.04eIF2B_5 domain-containing protein n=1 Tax=Nothophy... [more]
A0A2D4BXT7_PYTIN1.290e-3889.04Eukaryotic translation initiation factor 2 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10489contigC-tenellus_contig10489:4643..5317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G233
Preferred nameSUI3
PFAMseIF-5_eIF-2B
Model size243
Max annot lvl2759|Eukaryota
KEGG koko:K03238
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005850,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016282,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031369,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
Evalue3.37e-47
EggNOG OGsCOG1601@1|root,KOG2768@2759|Eukaryota
Ec32 ortholog descriptioneukaryotic initiation factor 2 beta subunit
Ec32 orthologEc-11_003650.1
Descriptiontranslation initiation factor activity
Cds size243
COG categoryJ
BRITEko00000,ko00001,ko01009,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789134.2540426-CDS-C-tenellus_contig10489:4642..47381680789134.2540426-CDS-C-tenellus_contig10489:4642..4738Choristocarpus tenellus KU2346CDSC-tenellus_contig10489 4643..4738 -
1680789134.2703054-CDS-C-tenellus_contig10489:5170..53171680789134.2703054-CDS-C-tenellus_contig10489:5170..5317Choristocarpus tenellus KU2346CDSC-tenellus_contig10489 5171..5317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10489.1.1prot_C-tenellus_contig10489.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10489 4643..5317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10489.1.1

>prot_C-tenellus_contig10489.1.1 ID=prot_C-tenellus_contig10489.1.1|Name=mRNA_C-tenellus_contig10489.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=81bp
VYIGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDQVSRLFFVHCQD
CGSSRSVAPIRSGFHAQTRADRRALRNAIK*
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mRNA from alignment at C-tenellus_contig10489:4643..5317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10489.1.1 ID=mRNA_C-tenellus_contig10489.1.1|Name=mRNA_C-tenellus_contig10489.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=675bp|location=Sequence derived from alignment at C-tenellus_contig10489:4643..5317- (Choristocarpus tenellus KU2346)
GTATACATAGGGAAGTATGTACCAAAATACATTGAGTCCCTGCTAAGGAA
GTACATTGTGGAGTATGTCACCTGTCAGATGTGCCGCAGTCCCAATACAA
CACTCACAAGGGATCAAGTGTCTCGCCTATTCTTTGTGCACTGCCAGGTC
TGTTTGGATTTTTTGTTTAATTGTTCTAAACTGTTCCATGGGTGCTGCTT
AGCTTACTCTTAGAAATTCTTTGGTGCGAGAAAGTGATGTTTGTACAGTG
GTATTGGAGACATTGAGTTGGTTATTTTACTTTGATGCTGTTTTGATCAA
GTATATTGTTAGTGTATGTAGTACAAGAGAGGTTTGAGGCTTTCTGTATT
GTAAGGACACATGTGTTGTCAATGTGTTTTTGTGTTATCTTTTTTTTCCA
TTATTGAATGTTGTAACCTGTATCAATTGGTGTTTGTCATCAAGAACTGT
TGGTTGAGCTGCTGTCTACTTCATTCTCCTGTAGTAATTGTGAAATAGTA
TTATTCACAGGTAAGGGAAGTCAATGTCTAGCCCGACAGTAACCCTCTGT
TGTCCCAAACCAACTTCTGCAATGTGCAGGACTGTGGTTCAAGCCGGTCT
GTGGCACCTATCCGGTCAGGTTTCCATGCCCAAACTCGTGCAGACAGGCG
TGCATTGCGCAATGCAATCAAGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10489:4643..5317-

>mRNA_C-tenellus_contig10489.1.1 ID=mRNA_C-tenellus_contig10489.1.1|Name=mRNA_C-tenellus_contig10489.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=243bp|location=Sequence derived from alignment at C-tenellus_contig10489:4643..5317- (Choristocarpus tenellus KU2346)
GTATACATAGGGAAGTATGTACCAAAATACATTGAGTCCCTGCTAAGGAA
GTACATTGTGGAGTATGTCACCTGTCAGATGTGCCGCAGTCCCAATACAA
CACTCACAAGGGATCAAGTGTCTCGCCTATTCTTTGTGCACTGCCAGGAC
TGTGGTTCAAGCCGGTCTGTGGCACCTATCCGGTCAGGTTTCCATGCCCA
AACTCGTGCAGACAGGCGTGCATTGCGCAATGCAATCAAGTAA
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