mRNA_C-tenellus_contig10488.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10488.1.1
Unique NamemRNA_C-tenellus_contig10488.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10488.1.1 vs. uniprot
Match: D7FNA2_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.500e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  391 PMQMKVRLSFRTDIGGMGENQDSCFIWRHEGSGTVVIGVFD 513
            PMQMKVRLSFRTDIGGM ENQD+CFIWRHE SG+ VIGV D
Sbjct:  106 PMQMKVRLSFRTDIGGMSENQDNCFIWRHEPSGSFVIGVLD 146
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BLAST of mRNA_C-tenellus_contig10488.1.1 vs. uniprot
Match: A0A835Z8N4_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.050e-11
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  394 MQMKVRLSFRTDIGGMGENQDSCFIWRHEGSGTVVIGVFD 513
            M +KVRLSFRTDIGGM ENQD CF+WRHE SG++VIGV D
Sbjct:    1 MSVKVRLSFRTDIGGMSENQDECFVWRHEPSGSLVIGVLD 40
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10488.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA2_ECTSI2.500e-1485.37PPM-type phosphatase domain-containing protein n=1... [more]
A0A835Z8N4_9STRA1.050e-1177.50Phosphatase 2C-like domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10488contigC-tenellus_contig10488:180..2502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size603
Hectar predicted targeting categoryother localisation
Exons3
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789134.2037244-CDS-C-tenellus_contig10488:179..3771680789134.2037244-CDS-C-tenellus_contig10488:179..377Choristocarpus tenellus KU2346CDSC-tenellus_contig10488 180..377 -
1680789134.2147663-CDS-C-tenellus_contig10488:1440..15771680789134.2147663-CDS-C-tenellus_contig10488:1440..1577Choristocarpus tenellus KU2346CDSC-tenellus_contig10488 1441..1577 -
1680789134.2237124-CDS-C-tenellus_contig10488:2234..25021680789134.2237124-CDS-C-tenellus_contig10488:2234..2502Choristocarpus tenellus KU2346CDSC-tenellus_contig10488 2235..2502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10488.1.1prot_C-tenellus_contig10488.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10488 180..2502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10488.1.1

>prot_C-tenellus_contig10488.1.1 ID=prot_C-tenellus_contig10488.1.1|Name=mRNA_C-tenellus_contig10488.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=201bp
GPPPFDALGKEKVTPTATMMHIFKRSCPKSDNHSQGMSSASPVARNDGEG
RMDVANGSTAPPSTFDGSPTSKKTIASPSPMDVCADKLPSAPTRTSDDQI
EDSNKSRPPGPPPSGLEWQKAQQQEQPSLKPMQMKVRLSFRTDIGGMGEN
QDSCFIWRHEGSGTVVIGVFDVSKTEKKKKETKRLLQVLQRCRAVETGLA
E
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mRNA from alignment at C-tenellus_contig10488:180..2502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10488.1.1 ID=mRNA_C-tenellus_contig10488.1.1|Name=mRNA_C-tenellus_contig10488.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2323bp|location=Sequence derived from alignment at C-tenellus_contig10488:180..2502- (Choristocarpus tenellus KU2346)
GGGCCACCCCCCTTCGATGCCCTTGGCAAGGAGAAAGTCACGCCGACAGC
AACGATGATGCATATCTTCAAACGATCATGTCCGAAATCAGACAACCATT
CTCAAGGCATGTCCTCTGCTTCACCTGTTGCGAGAAATGATGGCGAGGGG
AGGATGGATGTAGCGAATGGGAGCACAGCACCTCCGTCGACTTTCGATGG
CTCGCCCACTTCCAAGAAGACTATCGCTTCGCCATCACCGATGGACGTAT
GTGCCGACAAACTACCCTGTAAGGAGAGCCCCTCTCAACCCCATAAACTC
ACTTCCTGGAAGCTAGCCCAAACCATCGTACAGATTGAAATTTGGAGGGT
TGGAACAGATGGAATATGTCCCCACGTCTTGAAAGATTTTGAGCCATGTA
GTGCAATAGATCTTTCTTTGTCACCCAAGTGTAAAAAGCTGGGTCGTTGA
ACCTGGGATGGATTCTGCCAAAACCTGACAGGATGGAGAGCGTCTAACCC
TACCCTTCAATATAGAGAGAACATCAAAAATGCACCCAGTGTTTCCTTTT
GGTGTTGTACCAGAGCATAAAGGGAGCGTTACTTCCTCACTCTCTTGGTT
GCATACTCGTAAATTGACTTCCCGGTTTAGTACCGAGGGAGTTCATGTTC
TGGTAGAAACTGGTGATTTTGGTCAGAACTATGTATGCGCGTGGACCCTA
GGCGTGGACCCTAGTGCATTCAATGATCAAAGTTAAAATTCTCCCTAGAC
ATCCAGTTCAGTTTCCTTGCCAGACCTCCCTCAAATATATTTTTTGTGTG
AAACAGTGACCCCGCTTCTTAGGTAAGGAATAATAGCAGTAGGATTCGAC
TCGTGCAGCGACCCCACACCACTCCCCCATCGCCACACCCTGGACCTTCC
ATGTACTGTCTTGTGAGGCGTTCAGCCGCACCAACCAGGACATCAGATGA
TCAGATCGAAGATAGTAACAAGTCAAGGCCTCCTGGACCCCCACCGTCAG
GGTTGGAGTGGCAAAAGGCTCAGCAGCAGGAGCAGCCTTCGTTGAAACCA
ATGCAGATGAAGGTGTGGCAACTGTGGTTGCATCTGTTGCAATAGGATAA
TGCTAAGGGAAAAATATTCCTGAACAACAACAACAAGCATGAAATTTGAT
TGTGTGAAGGAGTGGTGGGGTGGATAATGATGGAATCTGTGTGCTTGCAT
CGGCCCTGCTGTTGGCAGTTGAAGCCGTAAACCACAACCCTCTCCTTGAA
CAAGTGCCAAATGTTGGGATGCATCAAAGCTCTTGCTTTGGTATTGAATA
TACAGGCTTATGTGCAGGGGTTGTTGTTGTTGGTAGTTATAGGAGGTGGT
ACGATATACCGTTACGTAGTTGCTATGGAATGGTTCGAATCTGAGCATTG
GTGAGCGTTGAGGGGTGTGTTCATCCAACCAAGACCCAGCCTGCCTGAGA
CCCATACTGATTTATCGTTACAGGGCAAATCCTGACCTTTTTCTGGATCC
TGATGGTGTAACACCGTCAGATCCGAACCTAACGAGCCCCAAAGACGAAG
ATTAGAATTTAGAAACATGTGAACCCCCCACCCCCAATGTCCGAGCATGA
GAGCCAGCAGATGGCTCTCGTGCTGCAGAATGGCATGGTTTGATCTTGTA
GCACATGGAACCGCGGTGCAATGCTACAGAGCCCTGTAGCCCTCTGTAGG
GAGTGCAAATCACTTCGGTGGAATGACTTGAAAGTGTACCAAATCAAGCC
GGCATTCAAGTATCTCATTGTAAGACTGCCTGCACACACACACACACACA
CACACACACACACACACGCACACATACACTCTCCTCCTGAAAAGGCCACC
TGAAGCACCACTTAGGGGGCATTTGTTGCACAATTCCAGCCCACGGGGTG
CGCAGGGGCCCCCTGCCGGACATACCCCGTCAAGTTGATACTTCTTTTTC
TTTTTTTTTCTCGGACCTGGTACTCTGGAAAGGGACTGGGACCTGGTCGT
GTGGGTACTGGCTTGAACCCCGTAGTGCGTACGCTTCGAATTGACCCGGA
GGAGGTTTTTGTCCTCTTGCTTTCTTGCGGCTCTTGTTGCTGTTTGTGTT
CCATGTTCCATGTTCCATGTTCCAGGTTCGCTTGTCTTTTAGGACGGACA
TTGGAGGCATGGGGGAGAATCAGGACAGCTGTTTCATATGGCGGCATGAG
GGCAGTGGGACCGTGGTCATCGGTGTGTTTGATGTGAGTAAAACAGAAAA
GAAAAAAAAAGAAACGAAACGGTTACTGCAGGTACTGCAACGGTGCCGGG
CGGTAGAAACAGGGCTCGCCGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10488:180..2502-

>mRNA_C-tenellus_contig10488.1.1 ID=mRNA_C-tenellus_contig10488.1.1|Name=mRNA_C-tenellus_contig10488.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=603bp|location=Sequence derived from alignment at C-tenellus_contig10488:180..2502- (Choristocarpus tenellus KU2346)
GGGCCACCCCCCTTCGATGCCCTTGGCAAGGAGAAAGTCACGCCGACAGC
AACGATGATGCATATCTTCAAACGATCATGTCCGAAATCAGACAACCATT
CTCAAGGCATGTCCTCTGCTTCACCTGTTGCGAGAAATGATGGCGAGGGG
AGGATGGATGTAGCGAATGGGAGCACAGCACCTCCGTCGACTTTCGATGG
CTCGCCCACTTCCAAGAAGACTATCGCTTCGCCATCACCGATGGACGTAT
GTGCCGACAAACTACCCTCCGCACCAACCAGGACATCAGATGATCAGATC
GAAGATAGTAACAAGTCAAGGCCTCCTGGACCCCCACCGTCAGGGTTGGA
GTGGCAAAAGGCTCAGCAGCAGGAGCAGCCTTCGTTGAAACCAATGCAGA
TGAAGGTTCGCTTGTCTTTTAGGACGGACATTGGAGGCATGGGGGAGAAT
CAGGACAGCTGTTTCATATGGCGGCATGAGGGCAGTGGGACCGTGGTCAT
CGGTGTGTTTGATGTGAGTAAAACAGAAAAGAAAAAAAAAGAAACGAAAC
GGTTACTGCAGGTACTGCAACGGTGCCGGGCGGTAGAAACAGGGCTCGCC
GAA
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