mRNA_C-tenellus_contig10479.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10479.2.1
Unique NamemRNA_C-tenellus_contig10479.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Match: D8LJA1_ECTSI (Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJA1_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 4.280e-64
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 2
Query:  452 MPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAEEIEK---GGGAAGDA---STDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPEGGEGARQSITVKADTAKIRPYVVCAVLRGVSFTVKSYASFMDLQVK 889
            MPTLGVNRDDLFEALG  YT+ EFDELCFEFGIELD+VTSEA E+EK   GGG AG A   STD+VYKIDIPANRYDLLCIEGL+RALRVFLGKED+P+FR VEP GG GARQ +TV +  AKIRPYVVCAVLRGV+F  KSY SFMDLQ K
Sbjct:    1 MPTLGVNRDDLFEALGHVYTEKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAGGAGARQKMTVGSGAAKIRPYVVCAVLRGVTFNSKSYKSFMDLQDK 152          
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Match: A0A7S1U5G5_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5G5_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.850e-52
Identity = 97/150 (64.67%), Postives = 121/150 (80.67%), Query Frame = 2
Query:  446 ATMPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAEEIEKGG--GAAGDASTDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPEGGEGARQSITVKADTAKIRPYVVCAVLRGVSFTVKSYASFMDLQVK 889
            + MPT+GV RDDLFEALG+ YTQDEF+ LCFEFG+ELDDVTSEAE+  K     AA D S +++YKID+PANRYDLLCIEG++RALR+FLG + AP +  +EP  G GAR ++TV+A TA +RP+VVCAVLRGV+FT K Y SF++LQ K
Sbjct:   32 SAMPTVGVVRDDLFEALGRTYTQDEFELLCFEFGVELDDVTSEAEQARKMNKDSAAADLSEEVIYKIDVPANRYDLLCIEGIARALRIFLGTQPAPTYEVLEPAAGAGARLAMTVEAPTAGVRPHVVCAVLRGVTFTPKRYQSFIELQDK 181          
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Match: A0A835YVN2_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN2_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.090e-47
Identity = 95/146 (65.07%), Postives = 116/146 (79.45%), Query Frame = 2
Query:  452 MPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAEEIEKGGGAAGDASTDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPEGGEGARQSITVKADTAKIRPYVVCAVLRGVSFTVKSYASFMDLQVK 889
            MPT+GV RDDLF+ALG++YT++EFDELCFEFGIELD+VT+E  E      A G   T I+YK+DIPANRYDLLC+EGL+RAL +FLG+   P FR VEP  G+  RQ+ITVK  TA+IRPYVVCAVLRGV+F  ++Y SF+DLQ K
Sbjct:    1 MPTVGVVRDDLFKALGKEYTEEEFDELCFEFGIELDEVTTEPAE------APGQEPT-IIYKLDIPANRYDLLCLEGLARALNIFLGRASPPDFRLVEPASGQ--RQTITVKPSTAQIRPYVVCAVLRGVTFDARTYKSFIDLQDK 137          
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Match: A0A4Z2CAU2_9TELE (Phenylalanine--tRNA ligase beta subunit n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2CAU2_9TELE)

HSP 1 Score: 167 bits (424), Expect = 4.920e-46
Identity = 88/148 (59.46%), Postives = 109/148 (73.65%), Query Frame = 2
Query:  452 MPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAEEI--EKGGGAAGDASTDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPEGGEGARQSITVKADTAKIRPYVVCAVLRGVSFTVKSYASFMDLQVK 889
            MPT+GV RD LF+ALG+ YT +EFDELCFEFG+ELD++TSE E I  EKG   A  AS  I+YKID+PANRYDLLC+EGL R ++VF  K +AP +RRV P  G+  R  IT   DTA +RPY V AVLR ++FT + Y SF++LQ K
Sbjct:    1 MPTVGVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEKGDCKASGASEVILYKIDVPANRYDLLCLEGLVRGMQVFKNKMEAPRYRRVGPARGQPQRLVIT--KDTAAVRPYAVAAVLRDITFTQERYDSFIELQEK 146          
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Match: A0A0D2N0B8_9CHLO (Phenylalanyl-tRNA synthetase, beta subunit n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N0B8_9CHLO)

HSP 1 Score: 166 bits (420), Expect = 2.200e-45
Identity = 86/151 (56.95%), Postives = 110/151 (72.85%), Query Frame = 2
Query:  452 MPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAEEIEKG-GGAAGDA------STDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPEGGEGARQSITVKADTAKIRPYVVCAVLRGVSFTVKSYASFMDLQ 883
            MP +GVNRD LF+ALG+ YT +EFD LCFE+GIELDDVTSE E + K  G AAGDA      S +++YKIDIPANRYD+LC+EG++RAL VF G+ +AP +R  +  G     Q + V+ +TA +RP+VV A+LRGVSF    Y SF+DLQ
Sbjct:    1 MPVVGVNRDRLFQALGRTYTDEEFDALCFEYGIELDDVTSEKELLRKEHGAAAGDAAQFAGASDEVIYKIDIPANRYDMLCLEGIARALNVFKGRVEAPQYRLADMRGKP--MQQLIVRPETALVRPFVVAAILRGVSFDPVKYDSFIDLQ 149          
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Match: A0A0S7HHU2_9TELE (Phenylalanine--tRNA ligase beta subunit n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HHU2_9TELE)

HSP 1 Score: 168 bits (426), Expect = 1.010e-44
Identity = 87/148 (58.78%), Postives = 110/148 (74.32%), Query Frame = 2
Query:  452 MPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAEEI--EKGGGAAGDASTDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPEGGEGARQSITVKADTAKIRPYVVCAVLRGVSFTVKSYASFMDLQVK 889
            MPT+GV RD LF+ALG+ YT +EFDELCFEFG+ELD++TSE E I  E+G   A DAS  I+YKID+PANRYDLLC+EGL R L+VF  K +AP +RR+ P  GE  R  IT   +TA +RP+ V AVLR ++FT + Y SF++LQ K
Sbjct:    1 MPTVGVKRDFLFKALGRTYTDEEFDELCFEFGLELDEITSEREIISKEQGDSKASDASDVILYKIDVPANRYDLLCLEGLVRGLQVFKNKLEAPRYRRLSPGSGEPQRLIIT--KETAAVRPHAVAAVLRNITFTQQRYDSFIELQEK 146          
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Match: A0A8D8B4M6_CULPI (Phenylalanine--tRNA ligase beta subunit n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8B4M6_CULPI)

HSP 1 Score: 166 bits (420), Expect = 4.630e-44
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  452 MPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAEEIEKGGG---AAGDASTDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPEGGEGARQSITVKADTAKIRPYVVCAVLRGVSFTVKSYASFMDLQVK 889
            MPT+GV RD LF+ALG+ YT DEF +LCFEFG+ELD+VT+E + I K  G   AA DAS D++Y+IDIPANRYDLLC+EGL + L+VFLGK   P F++V P  G+   Q + +   T +IRP+ V AVLR V+FT  SYASF+DLQ K
Sbjct:    1 MPTVGVKRDLLFKALGKTYTDDEFQKLCFEFGLELDEVTTEKQMITKEQGEVDAAKDASEDVIYRIDIPANRYDLLCLEGLVQGLQVFLGKMKFPEFKKVAPVKGD--LQKLVIMEATKQIRPFAVAAVLRDVTFTKDSYASFIDLQDK 147          
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Match: A0A7S2BP41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BP41_9STRA)

HSP 1 Score: 167 bits (423), Expect = 5.080e-44
Identity = 90/150 (60.00%), Postives = 111/150 (74.00%), Query Frame = 2
Query:  452 MPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAEEI--EKGGGAAGDASTDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPEGGEGARQSITVKADTAKI--RPYVVCAVLRGVSFTVKSYASFMDLQVK 889
            MPT+GV RDDLFE LG+ YT++EFDELCFEFGIELD+VTSEAE    E+ G A     T ++YKIDIPANRYDLLCIEG++RALR+F G + AP +R +EPE      Q + VK+   K   RP+VV AVLRG++F  K+Y SF+DLQ K
Sbjct:   23 MPTVGVIRDDLFERLGRTYTEEEFDELCFEFGIELDEVTSEAEMATKEQKGKALEGLDTTVIYKIDIPANRYDLLCIEGITRALRIFKGLDPAPTYRMLEPE----QPQVMRVKSANCKTVPRPFVVSAVLRGMTFDEKAYKSFIDLQDK 168          
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Match: A0A7R9QHG7_9ACAR (Phenylalanine--tRNA ligase beta subunit (Fragment) n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9QHG7_9ACAR)

HSP 1 Score: 162 bits (409), Expect = 5.120e-44
Identity = 82/146 (56.16%), Postives = 107/146 (73.29%), Query Frame = 2
Query:  452 MPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAE--EIEKGGGAAGDASTDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPEGGEGARQSITVKADTAKIRPYVVCAVLRGVSFTVKSYASFMDLQ 883
            MPT+ VNRD LF+ L  Q+T++EFD LCFEFGIELD+VTSE +    E+G   +  AS D++Y+I+IPANRYDLLCIEGL RAL +FLGK + P +R VEP   +G  Q + V  +T ++RPY V A+LRG+ FT + Y SF+DLQ
Sbjct:    1 MPTINVNRDQLFKLLDTQFTEEEFDNLCFEFGIELDEVTSEKQMKTKEQGMDRSKGASEDVLYRIEIPANRYDLLCIEGLVRALLIFLGKAEIPEYRSVEPP--KGKLQQLIVLPNTMQVRPYAVAAILRGIHFTQEIYESFIDLQ 144          
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Match: UPI0009A2901D (phenylalanine--tRNA ligase beta subunit-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2901D)

HSP 1 Score: 164 bits (416), Expect = 6.610e-44
Identity = 86/161 (53.42%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  425 NIYSYWRA----TMPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAEEI--EKGGGAAGDASTDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPEGGEGARQSITVKADTAKIRPYVVCAVLRGVSFTVKSYASFMDLQVK 889
             + S W++    TMPT+ V RD LFEALGQ YT +EFD LCFEFG+ELD+VTSE + I  E+G G A  AS  I+YKID+PANRYDLLC+EGL+R L+VF  + +AP + RV P  G+   Q + +  +TA++RP+ V AVLR + FT   Y SF++LQ K
Sbjct:    2 RVCSLWQSLPVFTMPTVSVKRDLLFEALGQAYTDEEFDALCFEFGLELDEVTSEKDIISREQGDGKAEGASDVILYKIDVPANRYDLLCLEGLARGLQVFKARIEAPRYTRVGPPNGD--MQKLIITKETAQVRPHAVAAVLRNIKFTKDRYDSFIELQEK 160          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10479.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA1_ECTSI4.280e-6478.29Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxI... [more]
A0A7S1U5G5_9STRA3.850e-5264.67Phenylalanine--tRNA ligase n=1 Tax=Phaeomonas parv... [more]
A0A835YVN2_9STRA1.090e-4765.07Phenylalanine--tRNA ligase n=1 Tax=Tribonema minus... [more]
A0A4Z2CAU2_9TELE4.920e-4659.46Phenylalanine--tRNA ligase beta subunit n=1 Tax=Ta... [more]
A0A0D2N0B8_9CHLO2.200e-4556.95Phenylalanyl-tRNA synthetase, beta subunit n=1 Tax... [more]
A0A0S7HHU2_9TELE1.010e-4458.78Phenylalanine--tRNA ligase beta subunit n=1 Tax=Po... [more]
A0A8D8B4M6_CULPI4.630e-4458.39Phenylalanine--tRNA ligase beta subunit n=1 Tax=Cu... [more]
A0A7S2BP41_9STRA5.080e-4460.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7R9QHG7_9ACAR5.120e-4456.16Phenylalanine--tRNA ligase beta subunit (Fragment)... [more]
UPI0009A2901D6.610e-4453.42phenylalanine--tRNA ligase beta subunit-like n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10479contigC-tenellus_contig10479:1966..5219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJA1
PFAMsB3_4,B5
Model size1593
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01890
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.36e-70
EggNOG OGsCOG0072@1|root,KOG2472@2759|Eukaryota
Ec32 ortholog descriptionDNA binding domain, putative
Ec32 orthologEc-02_005310.1
EC6.1.1.20
Descriptionphenylalanine-tRNA ligase activity
Cds size447
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789133.8046408-UTR-C-tenellus_contig10479:1965..24161680789133.8046408-UTR-C-tenellus_contig10479:1965..2416Choristocarpus tenellus KU2346UTRC-tenellus_contig10479 1966..2416 +
1680789133.8634825-UTR-C-tenellus_contig10479:4524..52191680789133.8634825-UTR-C-tenellus_contig10479:4524..5219Choristocarpus tenellus KU2346UTRC-tenellus_contig10479 4525..5219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789133.826363-CDS-C-tenellus_contig10479:2416..25571680789133.826363-CDS-C-tenellus_contig10479:2416..2557Choristocarpus tenellus KU2346CDSC-tenellus_contig10479 2417..2557 +
1680789133.8409429-CDS-C-tenellus_contig10479:3114..32321680789133.8409429-CDS-C-tenellus_contig10479:3114..3232Choristocarpus tenellus KU2346CDSC-tenellus_contig10479 3115..3232 +
1680789133.8505216-CDS-C-tenellus_contig10479:4336..45241680789133.8505216-CDS-C-tenellus_contig10479:4336..4524Choristocarpus tenellus KU2346CDSC-tenellus_contig10479 4337..4524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10479.2.1prot_C-tenellus_contig10479.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10479 2417..4524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10479.2.1

>prot_C-tenellus_contig10479.2.1 ID=prot_C-tenellus_contig10479.2.1|Name=mRNA_C-tenellus_contig10479.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=149bp
MPTLGVNRDDLFEALGQQYTQDEFDELCFEFGIELDDVTSEAEEIEKGGG
AAGDASTDIVYKIDIPANRYDLLCIEGLSRALRVFLGKEDAPLFRRVEPE
GGEGARQSITVKADTAKIRPYVVCAVLRGVSFTVKSYASFMDLQVKRF*
back to top

mRNA from alignment at C-tenellus_contig10479:1966..5219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10479.2.1 ID=mRNA_C-tenellus_contig10479.2.1|Name=mRNA_C-tenellus_contig10479.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3254bp|location=Sequence derived from alignment at C-tenellus_contig10479:1966..5219+ (Choristocarpus tenellus KU2346)
TCATATTCTGACAAGTATCGTTATCGTTTCGTTGCTTTGAAGACCGTAGG GAAAGTACTCTTGCTACCGTGAAGAGACCAGTTGGTAAGTGGGTCACAAG GTGGAAAACCTACCTCAACTTCTCATTGCATCCTTTGCAGATGAGTGTAG GTAGGTAGACGGGTTTCGTATGACGATGTGGAGTGACGGTAATGAAAGTA GAAGCAAATACTCTTTGGAGAAATTTCAGTTGTTGGTAGTTGTCTCGATC GCCCAGGCACATGACAATCGCCTCTCTCTCTGGTTGCTCTCAGCTTGGTG TGATCTGTTGTTGTCGCTTTCAGGCTTGTCATAGGGCGTGTGGTTTGCAG GAAGAACTCTCAGCTTAGTATGTCCTATCTTTACTCCTCGAAAGGTTGAA TATGTGTTTTTATGCTCACATTTCAACATCTACAGCTACTGGAGGGCAAC CATGCCGACTCTTGGCGTCAACCGTGACGACCTTTTCGAAGCCCTTGGTC AGCAGTACACTCAGGATGAGTTCGATGAGCTCTGTTTCGAGTTCGGTATA GAGTTGGATGATGTCACTTCCGAGGCGGAGGAGATCGAGAAGGCAAGAGT AACTCTGCAGCATATTTTCAACACCACACACCAGTTGTCCACGCAACAGT CGTCCAACAGCATTCATGAGGGTCCAACCTACCTGTGCGCACATTCCTTC GATTCAAAGTGCTGCTCATGCGAATGAACTGACTCATCTATTTGCGCCGC AAGAAAGCACGGTCTCCTAATCCATAGTCGAGTCGAAACGGCATCATGTC CCCTGTTCAATCGATGATGATTTCTTTGGGAAGAAGTGCAATTGTTGACG TAAGAACATGCAAAGTACAAGCTTGTCTTCTTGATCCACCGAATAAAATT GAATATGCTCACCTGCTCTATTCACTGTGTTTCACGTAATCACCCATCCT CTCCCCACTGTTCGCTACAATCGTTATACAGGGTGATTTTCCTCATATGA CTCTGCCACACTCGCGACATCCATAAGTACCACATCCCGCACATAGACAA CCAAGCACAGTGTGACTTGAAAAGTATTTTGACTGACTTACAACTAGCTG ATGCAAATCTTCTTCTAACTCTTAAAGTTTCACCAAATGCCTCTCTCAGG GAGGCGGAGCTGCAGGGGATGCATCAACCGATATAGTGTACAAGATAGAT ATCCCTGCCAACCGGTATGACCTCCTCTGTATTGAAGGCCTCTCACGCGC CCTTCGTGTCTTTCTGGGTGAGATATGCAGATCTTTGTCTGCCTTTACGG TTGACTGGGGTCGGGGGATGACCTGTAGTGTGGAGACAAGGATATGAACC TATCGAGTTAGAACAAACGTAGTTCAAGTTTGGCTTGTCTGGAGTCACAA CAGGAATCTATGGCTTGTTTCTGGTGAAATACTGCAGCAAATAACATGTT GTAGGATTTATTAACTCTTGCAGGGGGCTACGGAGTGATGTGATGCAGGA GCATCCTGCCACGTGGTGTCATCAAGCAGTTTGAATACTGGCTCCAAGGG AGGGATAGGTCTATCTTTGCGGGAAGTCAACCTGTCCAGGCACAGTGCCG AGATGGAAAAACCTCAATTTTTGCAATCTGAACTGCTCATGTCCATCTCT TGTCTGACTGGCAATGTTTCTATATACTTGATTTTAGGACGTTCTTTTCT GTTGCAATCTAATACCGATGTTAACATGTTGGGTAGTCGTCAACCCCAGC CTCTCTAGAGTTTGACATGTACATTGTATTGTGTCTTGGTTCTAGAACCC CCCTAGCCTATCCCCTTAGGCATCGGTGAGATGAGATGAGGCTTACAGGG AAAGTTGGTTTCAACTGTGTGGTTCTTCCTGAGGCTATGTATGATGCACT GTCCTGTTTTGTGAGAGGTTCAGATTGCCTCTCAGACATTGCAATGTATG CTGTAGCAAGGAAATACAGCAGTGTAGCCCAAACAACTCATGAAGCAGGT GTACATTTCACTTCCGACTTCTCGTGTACCCATTGTTTCACCTTTCACAC TCTTGGTAGCAGCAGTGTGTTGTTCACCTGTGGTGACCTCTGGCTCGGGG CCTAACCTTATACCCAGCGACACACATGTATTCAACCCACTCCCTCCTAT CAGAGATCTCATTTTGTCAGCCTGTAAATGGGGTCGCAGTAGGTGCCTGC ATCTGAACCATACTCTCTCTCGCCTACCCTCCCTCCCACAAACATGCGCA CATCGCAGACCTAGCAAAAACGCCAACCATATTTCCTGTTGATTATCACG ATTCAACTCTCGCTCTTTGGCACGAAATTGTTTAATAGTAGTAATGCGTA TCCTTGCCTCCCACCTGCCAGGCAAGGAGGACGCCCCATTGTTCCGCCGG GTGGAGCCGGAGGGGGGTGAGGGAGCAAGGCAAAGCATAACTGTGAAGGC GGACACGGCAAAGATTCGGCCGTATGTAGTTTGCGCAGTCTTGCGAGGCG TTTCATTCACGGTGAAGAGCTACGCAAGCTTTATGGACCTCCAGGTGAAA CGGTTTTGATACCCTCCAGGTGAAACGGTTTTGATACAGGGCGGCGTGTT GAGATGTTGTGCTTTGATGTTTGTTTGCAGGGTTGCTGCTGTTATGTAGA CCTTTTGTGTGTTCTTACTTTGAAGTATGTATGCGTGGTAAATGTGTTGA TGGGCCCGGTGCCATCCCTACTTGGGTTGTGAAAAAACAGATGGGGGGGA TGGGTAATCTCTGGAGGGTGCTTGGGTAGCAGGGAAGGTGTTATCTCAGG TACTGTTTGTGTGTACAGAAGTGAGTCAGGCAGTCTGATACAGCGCGAAT GTGTTTGCTAGGTGGGGTATGCTAGCCTGGACACAGGGAGGGGTGTTGCC ACTACCACACTCTAGCAGGGGTCATTCCATGGGTAGCCATTAGTTGGGAA TGATTGAAGTACCGTGGATGTTGTAATACCTTGCTGATTGGTAACAGTCC GGCAAGGGGGAATCAAAGCCTTTTGACAATATTCTGTTGCCAATACTACA TGCACTTCCGCTTAGGGTTAGGGTTAGAGCTCCAGTCTATTTTACTATTA TTGTATTATTTTCAAAAGATGATGTAAGCTTCAGTCTGTGCACAATAGTG CTACCGGTGGTGGCGCTCTCTGCCGAGAGGAGGGCAAGGGGGGCAGAACA TGTGATGGAAGAGCTCACGAAAAAGAGAACCGTGCGCTGGGAGTGATCAA TGGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10479:1966..5219+

>mRNA_C-tenellus_contig10479.2.1 ID=mRNA_C-tenellus_contig10479.2.1|Name=mRNA_C-tenellus_contig10479.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=447bp|location=Sequence derived from alignment at C-tenellus_contig10479:1966..5219+ (Choristocarpus tenellus KU2346)
ATGCCGACTCTTGGCGTCAACCGTGACGACCTTTTCGAAGCCCTTGGTCA
GCAGTACACTCAGGATGAGTTCGATGAGCTCTGTTTCGAGTTCGGTATAG
AGTTGGATGATGTCACTTCCGAGGCGGAGGAGATCGAGAAGGGAGGCGGA
GCTGCAGGGGATGCATCAACCGATATAGTGTACAAGATAGATATCCCTGC
CAACCGGTATGACCTCCTCTGTATTGAAGGCCTCTCACGCGCCCTTCGTG
TCTTTCTGGGCAAGGAGGACGCCCCATTGTTCCGCCGGGTGGAGCCGGAG
GGGGGTGAGGGAGCAAGGCAAAGCATAACTGTGAAGGCGGACACGGCAAA
GATTCGGCCGTATGTAGTTTGCGCAGTCTTGCGAGGCGTTTCATTCACGG
TGAAGAGCTACGCAAGCTTTATGGACCTCCAGGTGAAACGGTTTTGA
back to top