mRNA_C-tenellus_contig10433.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10433.1.1
Unique NamemRNA_C-tenellus_contig10433.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.050e-17
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    1 WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESGAGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLYIGGVM 306
            W +   +TL+E G EQ +ADPC+FR +VD   VMI+++++DD+L+A          ++   N KFP  NLGE     GC I R+ + GTL + Q+ YI  ++
Sbjct:   39 WGYYAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED--CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMV 138
[Close]
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.470e-17
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESGAGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLYIGGVM 306
            W +   +TL+E G EQ +ADPC+FR +VD   VMI+++++DD+L+A          ++   N KFP  NLGE     GC I R+ K GTL + Q+ YIG ++
Sbjct:  924 WGYHAADTLVENGFEQCKADPCVFRKMVDEVAVMIIVIYVDDILVAGSDED--CEELLASLNKKFPTKNLGECQWFDGCAIERDVKGGTLRISQTAYIGSMV 1023
[Close]
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Match: A0A6H5JJQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.420e-16
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    1 WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESGAGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLYIGGVM 306
            W +   +TL+E G EQ +ADPC+FR +VD   VMI+++++DD+L+A          ++   N KFP  N+GE     GC I R+ + GTL + Q+ YI  ++
Sbjct:  556 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED--CEELLASLNKKFPTKNMGECESFDGCAIERDVEAGTLKISQTAYIDSMV 655
[Close]
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Match: A0A6H5JB50_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB50_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 7.190e-16
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:    1 WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESGAGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLY 291
            W +   +TL+E G EQ +ADPC FR +VD   VMI+++++DD+L+A          ++   N KFP  N+GE  +  GC I R+ + GTL + Q+ Y
Sbjct:   62 WGYHAADTLVENGFEQFKADPCEFRNMVDEVVVMIIVIYVDDILVAGSDEDWDCEELLTSLNKKFPTNNVGECERFDGCAIERDGEAGTLRISQTAY 158
[Close]
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.830e-16
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    1 WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESGAGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLYIGGVM 306
            W +   +TL+E G EQ +ADPC+FR +VD   VMI+++H+DD+L+A          ++  FN +FP  NLGE     GC I R+   G L + Q+ YI  ++
Sbjct:  465 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDED--CEELLASFNKRFPSKNLGECEWFDGCAIERDVDAGALKISQTAYIDSMV 564
[Close]
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.040e-15
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    1 WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESGAGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLYIGGVM 306
            W +   +TL+E G EQ +ADPC+FR +VD   VMI+++++DD+L+A          ++   N KFP  NLGE     GC I R+ + GTL + Q+ YI  ++
Sbjct:  118 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED--CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMV 217
[Close]
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.110e-15
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    1 WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESGAGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLYIGGVM 306
            W +   +TL+E G EQ +ADPC+FR +VD   VMI+++++DD+L+A          ++   N KFP  NLGE     GC I R+ + GTL + Q+ YI  ++
Sbjct:  182 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED--CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMV 281
[Close]
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.220e-15
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESGAGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLYIGGVM 306
            W + + +TL+E G EQ +ADPC+FR +VD   VMI+++++DD+L+A          ++   N KFP  NLGE     GC I R+ + GTL + Q+ YI  ++
Sbjct:  928 WGYHVADTLVENGFEQCKADPCVFRKMVDEVVVMIIMIYVDDILVAGSDED--CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMV 1027
[Close]
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.230e-15
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    1 WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESGAGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLYIGGVM 306
            W +   +TL+E G EQ +ADPC+FR +VD   VMI+++++DD+L+A          ++   N KFP  NLGE     GC I R+ + GTL + Q+ YI  ++
Sbjct:  895 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED--CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMV 994
[Close]
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.230e-15
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    1 WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESGAGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLYIGGVM 306
            W +   +TL+E G EQ +ADPC+FR +VD   VMI+++++DD+L+A          ++   N KFP  NLGE     GC I R+ + GTL + Q+ YI  ++
Sbjct: 1004 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED--CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMV 1103
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10433.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE6.050e-1739.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L060_9PHAE7.470e-1741.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJQ8_9PHAE6.420e-1638.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB50_9PHAE7.190e-1639.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1V1_9PHAE8.830e-1639.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE1.040e-1539.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL3_9PHAE1.110e-1539.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1N9_9PHAE1.220e-1539.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSG8_9PHAE1.230e-1539.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE1.230e-1539.22Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10433contigC-tenellus_contig10433:65..370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog34373.CCU81581
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size306
Max annot lvl4751|Fungi
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.01e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,20YYK@147548|Leotiomycetes
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size306
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789131.3062804-CDS-C-tenellus_contig10433:64..3701680789131.3062804-CDS-C-tenellus_contig10433:64..370Choristocarpus tenellus KU2346CDSC-tenellus_contig10433 65..370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10433.1.1prot_C-tenellus_contig10433.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10433 65..370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10433.1.1

>prot_C-tenellus_contig10433.1.1 ID=prot_C-tenellus_contig10433.1.1|Name=mRNA_C-tenellus_contig10433.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=102bp
WNFLLVETLLELGLEQSEADPCLFRIIVDGGTVMIMIVHLDDMLMAEESG
AGYAVRIIEGFNDKFPVVNLGEVTKLMGCRIRRNRKTGTLVVDQSLYIGG
VM
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mRNA from alignment at C-tenellus_contig10433:65..370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10433.1.1 ID=mRNA_C-tenellus_contig10433.1.1|Name=mRNA_C-tenellus_contig10433.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=306bp|location=Sequence derived from alignment at C-tenellus_contig10433:65..370- (Choristocarpus tenellus KU2346)
TGGAATTTTTTGCTGGTGGAAACTTTGCTGGAGCTGGGCTTGGAACAATC
TGAGGCAGATCCATGTCTGTTCAGAATTATTGTGGATGGTGGGACTGTGA
TGATCATGATTGTCCATTTGGATGACATGCTCATGGCTGAGGAATCAGGG
GCTGGTTATGCTGTGCGTATCATTGAGGGATTTAATGATAAGTTCCCAGT
GGTGAATTTGGGTGAGGTAACCAAATTAATGGGATGCAGGATCAGGAGGA
ACAGGAAAACTGGGACACTTGTGGTGGATCAGAGCTTGTACATCGGTGGT
GTTATG
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Coding sequence (CDS) from alignment at C-tenellus_contig10433:65..370-

>mRNA_C-tenellus_contig10433.1.1 ID=mRNA_C-tenellus_contig10433.1.1|Name=mRNA_C-tenellus_contig10433.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=306bp|location=Sequence derived from alignment at C-tenellus_contig10433:65..370- (Choristocarpus tenellus KU2346)
TGGAATTTTTTGCTGGTGGAAACTTTGCTGGAGCTGGGCTTGGAACAATC
TGAGGCAGATCCATGTCTGTTCAGAATTATTGTGGATGGTGGGACTGTGA
TGATCATGATTGTCCATTTGGATGACATGCTCATGGCTGAGGAATCAGGG
GCTGGTTATGCTGTGCGTATCATTGAGGGATTTAATGATAAGTTCCCAGT
GGTGAATTTGGGTGAGGTAACCAAATTAATGGGATGCAGGATCAGGAGGA
ACAGGAAAACTGGGACACTTGTGGTGGATCAGAGCTTGTACATCGGTGGT
GTTATG
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