mRNA_C-tenellus_contig10428.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10428.2.1
Unique NamemRNA_C-tenellus_contig10428.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10428.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10428contigC-tenellus_contig10428:827..5044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1188
Hectar predicted targeting categorysignal peptide
Exons4
Cds size660
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10428.2.1prot_C-tenellus_contig10428.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10428 1132..4821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789131.0510325-UTR-C-tenellus_contig10428:826..11311680789131.0510325-UTR-C-tenellus_contig10428:826..1131Choristocarpus tenellus KU2346UTRC-tenellus_contig10428 827..1131 -
1680789131.1059735-UTR-C-tenellus_contig10428:4821..50441680789131.1059735-UTR-C-tenellus_contig10428:4821..5044Choristocarpus tenellus KU2346UTRC-tenellus_contig10428 4822..5044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789131.0606058-CDS-C-tenellus_contig10428:1131..12371680789131.0606058-CDS-C-tenellus_contig10428:1131..1237Choristocarpus tenellus KU2346CDSC-tenellus_contig10428 1132..1237 -
1680789131.0747232-CDS-C-tenellus_contig10428:1553..19111680789131.0747232-CDS-C-tenellus_contig10428:1553..1911Choristocarpus tenellus KU2346CDSC-tenellus_contig10428 1554..1911 -
1680789131.083097-CDS-C-tenellus_contig10428:4011..41361680789131.083097-CDS-C-tenellus_contig10428:4011..4136Choristocarpus tenellus KU2346CDSC-tenellus_contig10428 4012..4136 -
1680789131.0950863-CDS-C-tenellus_contig10428:4750..48211680789131.0950863-CDS-C-tenellus_contig10428:4750..4821Choristocarpus tenellus KU2346CDSC-tenellus_contig10428 4751..4821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10428.2.1

>prot_C-tenellus_contig10428.2.1 ID=prot_C-tenellus_contig10428.2.1|Name=mRNA_C-tenellus_contig10428.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=220bp
MAMAVACAFDATLLKLSQALSVIRVPTRGPSSAERLIELAACCAPFLDAY
EIVAETVLDALYNSADNDEQRNGENVQEGGGAWYEPKRGAAYAGAWCGAR
GLEAIPMDRDISAGHNKSRNERKNGGSGSSFDFTWEGRLQQTLEVLGEGV
MHHTTCSRENKCCCLGRGGEKGNGVSLKWNISFDCNHHGRLSAWSATSPP
GRETHPRVCFEGIMILHTP*
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mRNA from alignment at C-tenellus_contig10428:827..5044-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10428.2.1 ID=mRNA_C-tenellus_contig10428.2.1|Name=mRNA_C-tenellus_contig10428.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4218bp|location=Sequence derived from alignment at C-tenellus_contig10428:827..5044- (Choristocarpus tenellus KU2346)
TGGAAGAGGAAGAGGTATTGGAGGAGTGAGGGTAGGGTGGGGACTGTCAC
AAGGGGTTGATTCTTCGAGGGATGACAGGGAGAAGGGTTTCTACAATGGA
TATGGCATTGGCAGGTTTGAGAATACTACTGAGGATGGGGCTTTGGGGAA
GGGACTTGGATGTGGAGACAACTCTGGAGGTGACTCTACAGCGGGAAATT
GGAGGAGGAGGAGGCGTATTGGGATGGCGATGGCAGTGGCCTGTGCATTT
GATGCTACTCTTCTGAAGCTGTCACAAGCATTGTCCGTCATAAGGTGTGA
GGGGAAAGAGGAGAGCTGATTGGTGTGTGTTCGTATTTTGCAATTCCATG
AGTATCAACCAGTGGGCTGTTGCTGGTTGAGTGAAAATATGGAAGATTTG
AGTGCAAGGTCCATTGGTGAGCCCGGCAAATATATTACTATGCATATCAG
TTCTATCTATCTTGAGTATTGCAAAAGGAAATATTTGAACCTCTTCCACA
AAGAGCTCCTTTCAATAGATACTAGATGACATTTCTCCTGCGGAATTTCA
ACTTATTGCAGTGCGTGTAGTTCATTTTTTCTGAAGGGTTAACCCTCCTA
CCCCACGTCTACCCCTTCTCCTCCAACGACCATGAAACCACAATTTTCCA
TGAACATAGCCTCATACTTCACCCTCCTTTCCAACCGTAGTTCCACATCA
CTATTGCCTGTTTGCAGTTACATCACACTAGATAATTAATTCCCACTTGA
ATTGCCAAGAAACTGATATATACAGGAATGCTACAATGTACTACATCAGA
CACTATAGAAACAGAGAAAGGACTCATGATATGGATACTAGTACAGGATC
TTTGTTAAAAGGAAGGTTGTATCTCCATCTTTTTTCAATTTGTATACCTG
TGCCTCAGAGTTCCAACTCGAGGTCCTAGTTCTGCTGAACGGCTGATAGA
GCTGGCTGCATGTTGTGCTCCTTTTCTGGATGCATACGAAATTGTGGCCG
AAACTGTTCTGGATGCTCTCTACAATAGTGCCGGTGAGTTGAACGCCAAA
TGCGCCTGGTTGTTATGTTTGTCCTTGCATCTTGGAGACTATTAAAATAC
TCTTCAACCTTTGTCACCATTTAATGACAATTTAATAGAATCAATTAGAG
CAGTTCATGACACAAGCTTTTACTCGTAGAGAGTAGGAACGTGTAAGGTA
TAGATGCGCCTGATTCAAGCACATGTGTGCACTGAGCCTCTGTTCAGCAG
CTATGTTTGAGATAGGGTTGGTGGGCAATGGGTTGGTGAGTGTATGGATA
TTTTTGAGGGACAGACCTTATGTTGCATTAACTAGCGGTAAAATACAGTT
GTCCATGGTCTTGAGCCGTTTTTTTGTCTTGTTGTCCACCACAAACCATT
TTTTTCCTGTGACGTGCACCAATTACCTGTTAATTTGCTAACTGTACTGG
CAGAGGGAAATACATTTTGTTCGCATCACACTGGCAAAGAGTAGATATCT
TTTTTTCAAGCCAGGAACTGATATTCTGGGCACTACTGTGTTGTGAATCG
TTTCTTCCCTTTATATTTTATGTATAAATCTCTAGAATTTTGAACATATT
TTCCACTTATACTTGAATATATATGAACATCACTTAGATTAAACATCTCA
AAGGTATATATATATATATATATATATTATTTTTTCTACAATTGCATATT
GAGAAAATGTCTAACTGTTTATTCTACCAATACTGTACAGAAATTTACTT
CATTGCTACGACATTGTTTCTGTTTCCAACGGCTGTGGGGGAATGGTGTT
GGAGGTTGCAGAGTATGTTGTGAGTGAAAAGCTTAGCTTTGTTGGGCACA
TTCATGGAGGCTGTGTTGATCACATTAGAGGATGTGAATACTCATACATG
TATATATATATACTCAAAATATGTTGCACACCAAGTAGTATTTCAAACAT
TATGTCACCTATCGTAAGGAAATACCTAACGATGTGCTACATATTGTACG
CATATTTATGAAAAAGCTGTGCTTGCAGGGTTGGAGGCCATGGAAAGGGG
GGGGAGGGGTGCATTGTCCCTTGTGTCTTATATTATTCCCTCCCCTGCTT
GCTGTAGTGGAGACGGAGGTGTGAAGATCCAGAAGAAAGGAGAGATGTAC
AATTGTTATCTATCTTTGTGTACGAGTGAAGACTTGACTGTACATATTGC
TAAGTGAATCAATGCCAAAGATGGATTCCCCGTGCTGTGATCTGAGCTAG
TAGTTGCTACCCAGTCAGGAGTTGAGCAAGCGGGCTACCCAAGGTGGGGC
TCCTCTACCTTCATCCCATACCATCAACGTACACAATTCCAGAGTTCAAT
CTGTTCTAATCTGCTGACTATTCTAATATCCCTTGAATAATACATCACAG
TTACTTGTCCAGCTGCTGGTATAAGCTACTGCTTATTGTATCCTGACAAC
CTCAATCCAATACCTTCACTGAACCAATACATCTCAATGGTATTCAAGCG
TACCTCTTGACATATACGTACAATAATATTTTTGAAAAGTAGAGAAATAT
AATAAACAGGGATGGAAGAATGGAAGGCACCTTCTCAAGGTGTTAAAAAC
TATTGGTTTCTATGTACAGGATCAAGCACAAGACAATTTCATGTTTCTCT
TGTGGAATATTGCATGCTAGCATTAGAGGTATACCTACACAGATTGTCAA
AAATATTGTTTAGCATGTACTTCAACCTGGAGAAACATCTCCCCACATGC
TTCATTTTGTGGTTCCATTGCTTCTGATATGTTCAGTATATAGTTAAGTA
TATTCCTTTGCTGCAGATCTATTAGAGGAGATTATGAGATTGGTACAATG
AATAGTGGAGGTGAAGGAGCTTCATGGATAATTGACATGATCTGAAACTT
CCCATGGCAGCACCTCCTTTGTGGTGGTGTTGGTGTGAACCATGGTGTGG
GGATGTGCTTGGCCATCACTTAGTTCATACTGTACTTTCTATGTTCTTCT
GGCACATTTCTTTTGTTTCTTGATTCCTCTGCTTTACAACATTTGACAAG
GTGAAAGAGATGCATACGATAATATCAGTATGAAACATTTGTGTCTGCCC
AACCTTTTTTACCCCTTACATTTGTGTTGATAGACAATGATGAGCAAAGG
AATGGGGAGAACGTTCAGGAGGGGGGGGGGGCTTGGTATGAGCCCAAAAG
GGGAGCAGCATACGCTGGGGCATGGTGTGGAGCAAGGGGGTTGGAAGCAA
TACCCATGGATCGTGACATCTCAGCAGGTCATAATAAGAGCAGAAATGAA
AGGAAGAATGGAGGTAGTGGAAGCAGCTTTGATTTCACCTGGGAGGGTAG
ACTGCAGCAGACCTTGGAGGTCCTTGGTGAGGGAGTCATGCACCATACAA
CTTGTTCAAGAGAAAATAAATGCTGTTGTTTGGGACGGGGCGGGGAAAAG
GGTAATGGGGTATCTCTGAAGTGGAATATATCTTTTGACTGTGTGTGACA
AAAGGGTGAAAGGTTGGGAAGATGGAGGTTGGGGGAGGAGACAAAGCTAC
AAAAGATACTATATTATTTTTCTCCATTTTAGCGGTATGACGATCAAGTT
TGTCATTCTGGTAATACTATGTGCGCTTCTACAGCACATGCTTATCTTAA
GAATGGAATGTGGATCCCATTAACCAAATAGATGAATTTACCTTGCAACC
TCCTGCTATTCCCCATTGTTCCTTGGCATAACTTTCACCCGGGGTCTGCC
ATACATCTTTCCGATCTCTTTCCCATTCCCCACATCCACAACAAACAGCG
GAGGCCACAACCACCATGGCAGGCTTTCGGCTTGGTCAGCTACGTCTCCA
CCGGGTCGTGAGACGCATCCAAGAGTGTGCTTTGAAGGAATAATGATCCT
CCACACGCCCTAGATAGTGCACCTCTGCCTATCACACTTCAAGGGGTGAC
ATAAAATGGAAGGGATATAGGGAATGCTTCAGAGGAATTGAATTCATGCT
ATTGCATTGCATCAATGTAGCACAGAGACTACTCTTTTCAGTTCCACCCC
CATCAACTGACATGACTCCACTCTCCACTCACCCAATACCCACCTCAGAT
GCAGCATTATTGTAGACACGAATCTTCTATATGTATGTAGATCTCCACTC
TCCCTCCAACCTAGGCATTTCACTGCAAGTTATCTGCCTCCCAACCCTCC
CCCCCCATTCGCACCCCC
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Coding sequence (CDS) from alignment at C-tenellus_contig10428:827..5044-

>mRNA_C-tenellus_contig10428.2.1 ID=mRNA_C-tenellus_contig10428.2.1|Name=mRNA_C-tenellus_contig10428.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=660bp|location=Sequence derived from alignment at C-tenellus_contig10428:827..5044- (Choristocarpus tenellus KU2346)
ATGGCGATGGCAGTGGCCTGTGCATTTGATGCTACTCTTCTGAAGCTGTC
ACAAGCATTGTCCGTCATAAGAGTTCCAACTCGAGGTCCTAGTTCTGCTG
AACGGCTGATAGAGCTGGCTGCATGTTGTGCTCCTTTTCTGGATGCATAC
GAAATTGTGGCCGAAACTGTTCTGGATGCTCTCTACAATAGTGCCGACAA
TGATGAGCAAAGGAATGGGGAGAACGTTCAGGAGGGGGGGGGGGCTTGGT
ATGAGCCCAAAAGGGGAGCAGCATACGCTGGGGCATGGTGTGGAGCAAGG
GGGTTGGAAGCAATACCCATGGATCGTGACATCTCAGCAGGTCATAATAA
GAGCAGAAATGAAAGGAAGAATGGAGGTAGTGGAAGCAGCTTTGATTTCA
CCTGGGAGGGTAGACTGCAGCAGACCTTGGAGGTCCTTGGTGAGGGAGTC
ATGCACCATACAACTTGTTCAAGAGAAAATAAATGCTGTTGTTTGGGACG
GGGCGGGGAAAAGGGTAATGGGGTATCTCTGAAGTGGAATATATCTTTTG
ACTGCAACCACCATGGCAGGCTTTCGGCTTGGTCAGCTACGTCTCCACCG
GGTCGTGAGACGCATCCAAGAGTGTGCTTTGAAGGAATAATGATCCTCCA
CACGCCCTAG
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