mRNA_C-tenellus_contig10423.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10423.1.2
Unique NamemRNA_C-tenellus_contig10423.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Match: A0A7S1D394_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D394_CYCTE)

HSP 1 Score: 183 bits (464), Expect = 3.730e-49
Identity = 112/279 (40.14%), Postives = 162/279 (58.06%), Query Frame = 1
Query:  253 ASPTTQKRLKQGPSGVIS-CLAYSACSISMVLGNKALAT-----YGVDVHLLPVVFQCFFAMVMTKLLSAVGIPGLHAEAMNLKTAVSWLPINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNAHCCAALTLIVVGAAGTVVTGIDLRNGW-GLFWMVANVFSTASYIIYLKFATRFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSLLESGALKSWQYVGLNLLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHIA 1068
            A PT     +   + V S C+ YS CS+SMVL NK+LA+        D+++L VVFQ   A+   +L     +  +     N++TA  W P+NVLFC MLFT   +L++  +PM  +FK  T + VT  ++  FG  V +    A  +++ GA        D+   W GLFWM AN  +TA YI+Y+KFAT+ +KLS+ GMV YNN L  L L PA + +GEV+ LLE+ A+ +W Y   NL  G +GF +N  +L C+  T  +TY+I G+L+KV +A
Sbjct:   25 AKPTVAAAAQVASAKVASACMMYSFCSVSMVLTNKSLASSYNQLIDGDLNVLLVVFQAITAVGCVELCKR--LKWVEYPNFNMRTAKLWAPVNVLFCLMLFTGMASLQFNSVPMVTIFKNITNIVVTCGDYYFFGTSVESLVAMAFAVMLGGAIAA--AWHDIYITWVGLFWMCANCLATAGYILYMKFATKNVKLSKFGMVFYNNVLCTLFLLPASIFRGEVTLLLETEAIHTWDYFFKNLFAGFIGFFLNFASLNCVAATGPTTYAIVGSLNKVPVA 299          
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Match: A0A1Z5JIF2_FISSO (GDP-mannose transporter n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIF2_FISSO)

HSP 1 Score: 182 bits (461), Expect = 1.440e-48
Identity = 115/324 (35.49%), Postives = 175/324 (54.01%), Query Frame = 1
Query:  256 SPTTQKRLKQGP-------SGVISCLAYSACSISMVLGNKALAT---YGVD--VHLLPVVFQCFFAMV---MTKLLSAVGIPGLHAEAMNLKTAVSWLPINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNAHCCAALTLIVVGAAGTVVTGIDLRNGWGLFWMVANVFSTASYIIYLKFATRFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSLLESGALKSWQYVGLNLLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHIARARVPGESILKRVRVFCPVLSKKNWAWVAAGFLRHFTY 1182
            +P T K +KQ           + SC  YS CS+SM+L NK+LA+   + +D  +++L VVFQ   A V   + +++  V  P L+ E     TA +W P+NV FC MLFT  ++L+   +PM  VFK  T +  T  +++ FG +      AA  ++ +GA       I +    GLFWMVAN  +T+SY++Y+KFAT+ IKLS+ GMV  NN L V LL P     GE+++ L +  + +W Y G N   G +GF +N  +L C+  T  STY+I G+L+K+ +A         +    +F  V+  K W +++      F Y
Sbjct:   33 APLTTKDVKQTSLVSSGSIKAIASCTFYSFCSVSMILVNKSLASSYNHLIDGNLNVLLVVFQAIIAAVSVEVCRMMHWVQYPPLNWE-----TARAWAPVNVFFCLMLFTGMVSLETNSVPMVTVFKNVTNIITTAGDYIFFGSQPEGLAMAAFAVMFLGAVAAAQNDIHV-TATGLFWMVANCLATSSYVLYMKFATQNIKLSKFGMVFVNNVLCVALLLPVAFLNGELATFLNAEQVHTWDYAGKNAFAGFIGFFLNFASLHCVSVTGPSTYAIVGSLNKIPVA---------ILGYLIFDSVIDSKTWFFISVSLCGGFLY 341          
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Match: A0A6H5L2R8_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2R8_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 6.800e-48
Identity = 112/325 (34.46%), Postives = 179/325 (55.08%), Query Frame = 1
Query:  259 PTTQKRLKQGPSGVISCLAYSACSISMVLGNKALAT-YGVDVHLLPVVFQCFFAMVMTKLLSAVGIPGLHAEAMNLKTAVSWLPINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNAHCCAALTLIVVGAAGTVVTG-------IDLR-NGWGLFWMVANVFSTASYIIYLKFATRFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSL--------LESGALKSWQYVGLNLLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHIARARVPGESILKRVRVFCPVLSKKNWAWVAAGFLRHFTY 1182
            P   K++ +  + + SC A S  SISM+L NKALA  +  ++H LP+ FQCF A+++ +     G+  +  E  N+ TA+ W PI + FC+ML +SF++++++ +PM  VFK+ T         ++  G    H   A  L+++  A  V+TG        D+  + WG FWM AN F+TASY++ +KFATR +KL + GMV YNN LG L++ P  +  GEV +L        L+   L +  Y+G+NL  G  GF +N  ALWC+  TSA+TY++   ++   ++   + G  +L   R+     S + W ++    +  F Y
Sbjct:   71 PGGGKKMGEVANAIASCAALSFFSISMILANKALAVLFNANLHFLPMAFQCFIAVLLVEASRMKGL--VQYEPFNMATAMRWFPIAIFFCTMLLSSFLSMQYMGVPMVTVFKSLT-------NLIIVAGDYFWHSQVATPLVLLSLA--VMTGGAILASWSDIEFSAWGYFWMSANCFATASYVLTMKFATRTMKLPKFGMVFYNNLLGCLIMLPLAVCFGEVFTLESTSLVGFLDRADLHTPTYLGINLGAGAAGFFLNFAALWCVSATSATTYAVVNTVNNFPVS---ILGYYLLPGARI-----SHQQWEFIVVNIVGGFIY 376          
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Match: K0S0P0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S0P0_THAOC)

HSP 1 Score: 179 bits (453), Expect = 1.540e-47
Identity = 119/316 (37.66%), Postives = 170/316 (53.80%), Query Frame = 1
Query:  259 PTTQKRLKQGPSG----------VISCLAYSACSISMVLGNKALATY--GV-DVHLLPVVFQCFFAMVMTKLLSAVGIPGLHAEAMNLKTAVSWLPINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNAHCCAALTLIVVGAAGTVVTGIDLRNGWGLFWMVANVFSTASYIIYLKFATRFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSLLESGALKSWQYVGLNLLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHIARARVPGESILKRVRVFCPVLSKKNWAWVAAGFL 1167
            P   +   +GPSG          +I+   YS CS+ M+L NK LA+   G+ D+++L VVFQ   AMV  +    +G   +   A +L TA SW P+NVLFC MLFT   +L+   +PM  VFK  T +  T+ + +L+G +V+    AA  +++ GA     +        GLFWMVAN   T+ Y++YLKFATR ++LS+ GMV YNN L VL L P  L  G++   L   AL +  Y   N L G VGF +N  +L CI     +TY++ G+L+KV IA         + R  +F  V+S + W  +  G L
Sbjct:   29 PGRMEASPRGPSGDAEQSSASKSLIASAMYSGCSVGMLLVNKNLASSYNGLKDLYILLVVFQAIAAMVCVEFSKHMG--WVDYPAFHLSTARSWAPVNVLFCGMLFTGMASLEHNSVPMVTVFKNITNIMTTLGDCILYGARVDFPVLAAFGIMLAGAVMMAASNSAGVTQTGLFWMVANCLCTSGYVLYLKFATRSVRLSKFGMVFYNNVLCVLFLFPVTLVNGQLGKFLGKKALHTADYAVKNALAGFVGFFLNFASLKCIAQAGPTTYAMLGSLNKVPIA---------IFRYLIFDNVISGETWFILMGGIL 333          
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Match: A0A7S2SW66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW66_9STRA)

HSP 1 Score: 176 bits (446), Expect = 6.410e-47
Identity = 101/261 (38.70%), Postives = 160/261 (61.30%), Query Frame = 1
Query:  292 SGVISCLAYSACSISMVLGNKALAT-YGVDVHLLPVVFQCFFAMVMTKLLSAVGIPGLHAEAMNLKTAVSWLPINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNAHCCAALTLIVVGAAGTVVTGIDLRNGWGLFWMVANVFSTASYIIYLKFATRFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSLLES-GALKSWQYVGLNLLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHIA 1068
            S ++SCLAYS CSI+MVL NKALA  + VD+ +L VV QC FA+++ +    +GI  +  +      A+ WLP+N+ F  ML TSF + K++ +P+  VFK  T + +   ++   G ++     AA  ++VVGA       + L +  G  WM+ N  STASY++Y+K AT+ + +S+ GMV YNN L V LL P     GEV + L +   + S  ++ +N++ G +GF +NL +LWC+  TSA+TY++ G+++K+ +A
Sbjct:   18 SQLLSCLAYSLCSITMVLSNKALAAVFHVDIPVLLVVMQCSFAVLLVEASRIMGI--VSYQPFQSSVALRWLPVNLCFVVMLMTSFRSFKFLNVPIITVFKNLTNILIVAGDWYWHGQRITLGIIAAFGVMVVGAVFAAKNDV-LFSFEGYCWMLGNCLSTASYVLYMKTATKSVDISKFGMVFYNNLLSVPLLLPLAFGLGEVDTALANLDIITSLNFLFVNIVAGSMGFFLNLASLWCVSATSATTYALVGSVNKIPVA 275          
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Match: A0A4D9DFY1_9STRA (EamA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DFY1_9STRA)

HSP 1 Score: 174 bits (440), Expect = 3.220e-45
Identity = 95/258 (36.82%), Postives = 150/258 (58.14%), Query Frame = 1
Query:  298 VISCLAYSACSISMVLGNKALAT-YGVDVHLLPVVFQCFFAMVMTKLLSAVGIPGLHAEAMNLKTAVSWLPINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNAHCCAALTLIVVGAAGTVVTGIDLRNGWGLFWMVANVFSTASYIIYLKFATRFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSLLESGALKSWQYVGLNLLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHIA 1068
            +ISC AY+ CSI+MVL NKALA+ Y  D+  L + FQ   A+V+      +G     +   +   A+ WLP+N+ F SML T F++L+++ +PM  +FK  T V +   E+ L+G  V+     A  ++++GA       I   +G G FWM++N    A Y++Y+K AT+ ++L +  MV YNN L + +L      +GE ++   S  L +  YV L+L  G+VGF +NL  LWC+   SA+TYS+ G ++K+ +A
Sbjct:   92 IISCFAYTFCSITMVLTNKALASQYDADIDFLVIAFQSLCAVVLVLTCDTLGFIQHGSTKFDPGVALQWLPVNLFFVSMLSTGFLSLRYLNVPMVTIFKNLTNVGIMWGEWSLYGAHVSLGAILACAIMILGAVLAAANDITF-SGIGYFWMLSNCVCCAGYVLYMKHATKTVRLPKFAMVFYNNLLSLPILLAGAAVRGEYTTFFWSEDLHTAAYVSLSLYAGLVGFALNLATLWCVSNNSATTYSVVGAMNKIPLA 348          
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Match: A0A7S2R176_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R176_9STRA)

HSP 1 Score: 170 bits (430), Expect = 3.000e-44
Identity = 95/262 (36.26%), Postives = 155/262 (59.16%), Query Frame = 1
Query:  298 VISCLAYSACSISMVLGNKALAT-----YGVDVHLLPVVFQCFFAMVMTKLLSAVGIPGLHAEAMNLKTAVSWLPINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNAHCCAALTLIVVGAAGTVVTGIDLR-NGWGLFWMVANVFSTASYIIYLKFATRFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSLLESGALKSWQYVGLNLLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHI 1065
            ++SC  Y  CSISMVL NK+LA+        D+++L VVFQ   A++  +  +   +  +     N++TA  W P+N++FC MLFT   +L+   +PM  +FK  T ++ +  ++  FG  V+     + +++++GA   +  G D   N  G+FWM++N F+TA YI+Y+K+AT+ +KL++ GMV YNN L +L L P     GE+ + L + A+ S+ Y   N   G VGF +N  +L C+  T  +TY+I G+L+K+ I
Sbjct:   44 ILSCALYCFCSISMVLVNKSLASSYNDLIQGDLNVLLVVFQAIIAVIAVE--TCKKMKWVEYPTFNMRTARQWAPVNIMFCLMLFTGMASLQVNSVPMVTIFKNITNIFCSFGDYYFFGSTVDRFVILSFSVMLLGAL--LAAGSDFEMNPVGIFWMISNCFATAGYILYMKYATKNVKLTKFGMVFYNNVLCILFLLPVATINGELLTFLRTNAIHSFDYFWKNGFAGFVGFFLNFASLNCVANTGPTTYAIVGSLNKIPI 301          
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Match: A0A7S1ZAE0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZAE0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.290e-43
Identity = 102/300 (34.00%), Postives = 164/300 (54.67%), Query Frame = 1
Query:  298 VISCLAYSACSISMVLGNKALAT-----YGVDVHLLPVVFQCFFAMVMTKLLSAVGIPGLHAEAMNLKTAVSWLPINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNAHCCAALTLIVVGAAGTVVTGIDLRNGWGLFWMVANVFSTASYIIYLKFATRFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSLLESGALKSWQYVGLNLLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHIARARVPGESILKRVRVFCPVLSKKNWAWVAAGFLRHFTY 1182
            +++C  YS CS+SM+L NK+LA+     +   +++  VV Q   A++  ++   + +  +   + N++TA  W P+N+ FC+MLFT   +L++  +PM  VFK    V VT  +   FG +V     A+  L++ GA       +      G+FWM ANV STA YI+Y+KFAT+ +KLS+ GMV YNN L  + L P ++  GE++  + + AL S  Y   N   G VGF +N  +L C+  T  +TY+  G L+K+ I        S+L  V +F  +++ + W ++    L  F Y
Sbjct:   51 LMACTMYSGCSVSMILVNKSLASSYNHLFDGSLNVFLVVVQAVVAVICVEICKKMKL--VEYPSFNMQTAKLWAPVNIFFCAMLFTGMASLQYNSVPMVSVFKNINNVVVTFGDRYFFGVRVEPLILASFLLMLGGAVAAASNDLQASPA-GIFWMSANVVSTAGYILYMKFATKNVKLSKFGMVFYNNVLCTVFLLPVIILNGEMNIFMNTEALHSVDYFVKNFFSGFVGFFLNFASLNCVAATGPTTYATVGTLNKIPI--------SLLGYV-LFDDIITAQTWMYITVSMLGGFLY 338          
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Match: K0R1P0_THAOC (TPT domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1P0_THAOC)

HSP 1 Score: 176 bits (447), Expect = 1.860e-43
Identity = 114/324 (35.19%), Postives = 173/324 (53.40%), Query Frame = 1
Query:  256 SPTTQKRLKQGPSG----------VISCLAYSACSISMVLGNKALAT-----YGVDVHLLPVVFQCFFAMVMTKLLSAVGIPGLHAEAMNLKTAVSWLPINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNAHCCAALTLIVVGAAGTVVTGIDLRNGWGLFWMVANVFSTASYIIYLKFATRFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSLLESGALKSWQYVGLNLLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHIARARVPGESILKRVRVFCPVLSKKNWAWVAAGFLRHFTY 1182
            SP   +   +GPSG          +I+   YS CS+ MVL NK+LA+        D+++L VVFQ   A+V  +  S+  +  +   A NL TA SW P+N+LFC MLFT   +L+   +PM  VFK  T +  T+ + +L+G  V+    AA  +++ GA        D+    GLFWM+AN   T+ Y++YLKFAT+ +KLS+ GMV YNN L +L L P  L  G++   L + AL +  Y   N   G VGF +N  +L C+  T  +TY++ G+L+KV IA         +    +F   +S++ W +++   +    Y
Sbjct:   68 SPGRMEASPRGPSGDAEQSSASKSLIASAMYSGCSVGMVLVNKSLASSYNHLIEGDLNILLVVFQAIAAVVCVE--SSKHMGWVDYPAFNLSTARSWAPVNILFCGMLFTGMASLEHNSVPMVTVFKNITNIMTTLGDCILYGASVDFLVLAAFGIMLAGAVMAARNSADVTQT-GLFWMLANCLCTSGYVLYLKFATKSVKLSKFGMVFYNNVLCMLFLFPVTLVNGQLGKFLGTKALHTADYAVKNAFAGFVGFFLNFASLNCVAQTGPTTYAMLGSLNKVPIA---------IFGYLIFDNAISEETWTFISISLMGGILY 379          
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Match: D8LTL4_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL4_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 2.220e-43
Identity = 100/258 (38.76%), Postives = 148/258 (57.36%), Query Frame = 1
Query:  298 VISCLAYSACSISMVLGNKALA-TYGVDVHLLPVVFQCFFAMVMTKLLSAVGIPGLHAEAMNLKTAVSWLPINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNAHCCAALTLIVVGAAGTVVTGIDLRNGWGLFWMVANVFSTASYIIYLKFATRFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSLLESGALKSWQYVGLNLLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHIA 1068
            V S L+YS CS+SMV+ NK LA TY  D+  L VV QC  A ++ + +  +G      +  N  TA  WLP+++ F +MLFTSF AL+ + +PM  VFK  T + +   ++  F    +     ++ ++V GA       +D  N WG FWMVAN  +TA Y++Y+K AT+ IKL R GMV YNN L   LL PA    G+ +    +  L++  Y+   L  GVVG  +N  +LWC+  TSA+TY++ G+++ +  A
Sbjct:   27 VSSSLSYSFCSVSMVMSNKLLAFTYKSDMAFLVVVGQCLVATILVEAVRRMGYASY--DPFNFSTARRWLPVSICFSAMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFQQAASWLVMFSMAVMVFGALFASYNDLDF-NPWGYFWMVANCCTTAGYVLYMKHATKSIKLPRFGMVFYNNLLTTCLLTPAAFMMGDFTIFWTTPQLRTVTYMTALLFSGVVGVLLNFASLWCVGATSATTYAVVGSVNVIPTA 281          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10423.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1D394_CYCTE3.730e-4940.14Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5JIF2_FISSO1.440e-4835.49GDP-mannose transporter n=2 Tax=Fistulifera solari... [more]
A0A6H5L2R8_9PHAE6.800e-4834.46TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
K0S0P0_THAOC1.540e-4737.66Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2SW66_9STRA6.410e-4738.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9DFY1_9STRA3.220e-4536.82EamA domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S2R176_9STRA3.000e-4436.26Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1ZAE0_9STRA1.290e-4334.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0R1P0_THAOC1.860e-4335.19TPT domain-containing protein (Fragment) n=1 Tax=T... [more]
D8LTL4_ECTSI2.220e-4338.76TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10423contigC-tenellus_contig10423:230..4800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0S0P0
PFAMsTPT
Model size1698
Max annot lvl2836|Bacillariophyta
KEGG koko:K15356
KEGG TC2.A.7.13
Hectar predicted targeting categoryother localisation
Exons7
Evalue8.6e-50
EggNOG OGsCOG5070@1|root,KOG1444@2759|Eukaryota,2XAT0@2836|Bacillariophyta
Descriptionnucleotide-sugar transmembrane transporter activity
Cds size1224
COG categoryGOU
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10423.1.2prot_C-tenellus_contig10423.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10423 650..4746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.7241697-UTR-C-tenellus_contig10423:229..6491680789130.7241697-UTR-C-tenellus_contig10423:229..649Choristocarpus tenellus KU2346UTRC-tenellus_contig10423 230..649 -
1680789130.8152866-UTR-C-tenellus_contig10423:4746..48001680789130.8152866-UTR-C-tenellus_contig10423:4746..4800Choristocarpus tenellus KU2346UTRC-tenellus_contig10423 4747..4800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.735392-CDS-C-tenellus_contig10423:649..9631680789130.735392-CDS-C-tenellus_contig10423:649..963Choristocarpus tenellus KU2346CDSC-tenellus_contig10423 650..963 -
1680789130.7477672-CDS-C-tenellus_contig10423:1203..13111680789130.7477672-CDS-C-tenellus_contig10423:1203..1311Choristocarpus tenellus KU2346CDSC-tenellus_contig10423 1204..1311 -
1680789130.759669-CDS-C-tenellus_contig10423:1962..20931680789130.759669-CDS-C-tenellus_contig10423:1962..2093Choristocarpus tenellus KU2346CDSC-tenellus_contig10423 1963..2093 -
1680789130.769374-CDS-C-tenellus_contig10423:3172..33211680789130.769374-CDS-C-tenellus_contig10423:3172..3321Choristocarpus tenellus KU2346CDSC-tenellus_contig10423 3173..3321 -
1680789130.7856953-CDS-C-tenellus_contig10423:3623..37941680789130.7856953-CDS-C-tenellus_contig10423:3623..3794Choristocarpus tenellus KU2346CDSC-tenellus_contig10423 3624..3794 -
1680789130.7976382-CDS-C-tenellus_contig10423:4203..42541680789130.7976382-CDS-C-tenellus_contig10423:4203..4254Choristocarpus tenellus KU2346CDSC-tenellus_contig10423 4204..4254 -
1680789130.806334-CDS-C-tenellus_contig10423:4446..47461680789130.806334-CDS-C-tenellus_contig10423:4446..4746Choristocarpus tenellus KU2346CDSC-tenellus_contig10423 4447..4746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10423.1.2

>prot_C-tenellus_contig10423.1.2 ID=prot_C-tenellus_contig10423.1.2|Name=mRNA_C-tenellus_contig10423.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=408bp
MIDCGEMSKGLLPVPHLLSPTGRKLVVCVEIVHLTPVASSFFLPNKDTRR
YLPKKGTSWLETATKMASPTTQKRLKQGPSGVISCLAYSACSISMVLGNK
ALATYGVDVHLLPVVFQCFFAMVMTKLLSAVGIPGLHAEAMNLKTAVSWL
PINVLFCSMLFTSFMALKWIEIPMFQVFKTSTVVWVTILEFLLFGGKVNA
HCCAALTLIVVGAAGTVVTGIDLRNGWGLFWMVANVFSTASYIIYLKFAT
RFIKLSRLGMVKYNNTLGVLLLAPAVLAKGEVSSLLESGALKSWQYVGLN
LLVGVVGFGINLVALWCIECTSASTYSITGNLSKVHIARARVPGESILKR
VRVFCPVLSKKNWAWVAAGFLRHFTYHSEMSRNRQHVHVMKRRHQNKDID
TSLTNTI*
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mRNA from alignment at C-tenellus_contig10423:230..4800-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10423.1.2 ID=mRNA_C-tenellus_contig10423.1.2|Name=mRNA_C-tenellus_contig10423.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4571bp|location=Sequence derived from alignment at C-tenellus_contig10423:230..4800- (Choristocarpus tenellus KU2346)
ATAACATATAGGAAGAGGCATGGGTGCGTGGTATTTTTTCTCGGGGCCAT CGGTATGATAGATTGTGGAGAAATGAGCAAGGGTCTTCTTCCTGTACCAC ACCTACTATCCCCAACAGGCCGTAAACTTGTTGTCTGTGTGGAGATAGTT CATCTCACACCGGTTGCCTCAAGCTTTTTCCTTCCCAACAAAGACACACG TCGATACTTACCAAAGAAGGGGACCTCGTGGTTGGAAACTGCAACGAAGA TGGCCAGCCCCACCACACAAAAGAGGCTAAAGCAAGGACCTTCTGGGGTC ATATCCTGTCTAGCCTACAGCGCGTGTTCCATATCAATGGTGCTGGGTAA TAAGGTGTGTTTGATATGAAGGCTGTCAGTCATGGTATTTACCAAAATAG CATGACCATCTTCAGATGGCATCAGTTATGATCTGACCTTAGACCCCCTC CCCTTCCTGACTTGCGACCTTTTGCCTGTTGCTCACCTCCATTCGCGAAT TGGGTACTATATTTGTCATGTATTACCTCGTGGTTAAATGTCCCAGGCCT TGGCGACCTACGGTGTGGATGTGCATTTGCTCCCAGTTGTTTTTCAGGTA CGGCACACAGGATTACTTTTGCAAGTTTGATGATCAAAGTTGAAGAGAGA CCTCGCCAGATCTCTGTGGTGTAGATTTGGGACAGGATGAGGCGTCTTCT GGTGGTACGGGGCTGGTGTGTAGCGGGAACCTTGCCCTTGCACATTTTTG TGTTACGCATGTCTTGTAGGAAAGATGTACCATCGTTCCTCTCCACATTC TGATCGTCGAAGTACATGACCATTGCGTCATGTTGTACATTAGCCAAAAA TGTCTTATTTATGACGATTCTTCGTCAGTGGGGTGTGAGAAGTCTGCGCG ACATTCGTTTGATTTCTTTCAATGTAAGTATTGCTGTCACTGTCAGATGC TGCAAATGAACTGACATATGCCGCCATATCCCATTCCTGTGTCATCACGA TAATAGTGTTTTTTTGCGATGGTGATGACCAAGTTGCTGAGTGCAGTGGG CATTCCCGGGCTTCATGCTGAGGCGATGAATCTGAAGACAGCAGTTTCCT GGTTACCAATAAACGTGCTTTTTTGCTCGATGCTCTTCACCAGCTTCATG GCTCTCAAGTGGATAGAGATCCCCATGGCAAGGAAATGAATATAATAACA GCTTTAGCCTGCTTACGAATAAATCTCCTGTTGCTCTTTGCTGCTGGTCA GCTCCATGGTTCTGAAGTGGATTTTGATCCACATGGGAGGGGAGGTGCAA GAAATATGGAAGGGCAGTGTGCTGAGACTATCATCGTTTTGCTCATGCAT CATGCATATGATTCCTTCATTCAATCAAATCTCTCGTCTCCTGCTCTGCT TCCCCCCTTCCCCGCCATTCCATTCATCAATCGACATATTCAGTACTTCC CTAATCTCACAATATTTCTTCCCCAACAGTTCCAGGTCTTCAAGACCTCT ACAGTTGTGTGGGTTACTATATTGGAATTCCTTCTATTTGGCGGCAAAGT GAATGCACACTGCTGTGCAGCTCTGACGCTGATTGTTGTTGGGGCAGCTG GGACAGTGGTAACGGGCATCGATCTTCGGTGAGCAATGTGAAGTACTCTC TCATCATTGTGGTGATTGGGGATTTACGTCCAAGTTTCGAGAGGTTCAAG TATACTTGCACGGATATGTATCCAGTCAGAGGTTCAAACGGAGAGCGATG AAGAGGGCAATTTTACGCCCAAACGCCTGAAGGATGAGGGTGTTCTCTTA ATGACAACTCTCACCGTAGATTGTACTTCATTGCCCTTGTATGCTTTATG GCATGTAGTATGTACTATCCTTACATTCGTTTGCAGCAGTCGGTATTTTC AAAAGTCTCAGTGTACCCTATTGAGGCTGTTGTAACTGTGACCAGGGCAT GCGGCTGTTCCTTGATGGGCATATATATGGATGAAAATTATATCATACTT AAAGTAGAGCACCTATTCAGTACTACTTTAGCAGTCATTCAATGCTAAGA GGGCAAACCAGAGTTACGGGGTGCTGATTTTGTATGCGTGTTTTTCCAGG TGAGCAGGTCATACTACAAAGATCCGAACCCTGCTAAAACATTAGCGTTG GGTTGTGACCACCATTCGAAAATAATAATTTTCCGCTTGTCCATTCATTC AATCATTCCCCAAGTCACTATAAACACTACCATCCAGTTTACCACCATTT TTGTTTTCAAGGTTCTAACTGCTGAGTTCTTGGCATCCTTTTTCTGCATG TTGATGTTTATGTTGATGGGCAACAGCTGGCACCCTGTTCCTTGCTATAC TGCAAGACACACGACTCAATCTTTTCTCAAGTTCTCGACAAAATGAACCT CAAATTCTTGCAAACTTTCTTTCTCATGTTAGGACTAATTCTGCATAGAG GATTGAAAGCAGGTGTCACAAACGACAATGTATACACTCTGATTTGTTCT TTTCCAGGCATCTCAGCTCCAAAATATAGTGTGGTGATAAGGTTTGGTGG TCACAGAGGAAACTAAAGGGTGGATGTATCTAATTAGCAGTCTTTGTTGC TGTCTGTTCTCAATGTCCCCCATCCTTAATTTTGTAGGTCTCTGGACTAG TTTTTTTTTTTGTCTTCTTGTCTGACTCCCTTTTCATGGTCGTTCATTGT CTGCCAGGAATGGTTGGGGATTGTTCTGGATGGTAGCTAATGTGTTTTCA ACGGCCAGCTACATTATCTACTTGAAGTTTGCTACTCGCTTCATCAAGCT CTCACGCTTAGGCATGGTGAAATACAACAACACTCTGGGTGAGGACTTTC CCAAGTTGGTAACCCTAAAAAAATGCACCACTGGAGTTTATGTTACATGT TTTGAAGGTCATATATCTCTACTTGCTGGGACTTTTGAGTTCCACCTGGT CTTGAGATAGGTACTTCATCTTGAACCTGGAAAGGCGGCCTACTCATTCC AAATATTTATTTATTTTTGCTGTGAGTGGTAAGCACATTGGGTAATAAAG GGTCTTACTCTACCTTACATGTCAAGTATGCACTGATGCCCGTTGACTCA TTTGTCGGAAATTAAAGGAGAATTGAACCTTTGACCACAGTGACTGATAG AAATAGTGATAGAAATAGTGATAGAAATATTTGGCGGGAGATGTAAACAG TAGTAGTAACGCTTGTTTTTCTGATATTCTGTTGTGTGCGCGTCAAGCTT TTCCAGGATGTCCTGAGGAGGTAATCATTAGCGTTGAAAGAACATCATCG GGTAATTATCTGTTGTCAGATGTCTACCTACCATGTCAAGATCGAAATCA ACATGATGAGTCAGGTAGTATACCTTGTTGAGCCTTCCCCGCCCCCAGTT TCTTGTGTCTTCACTGATAGATACATTAAAGACAGTTTCGGTGCCTTTAC ACCTATTCCCAATGATTGCCCCTCCGCATGTTTTGTCAGGAGTGCTGCTG CTGGCCCCAGCAGTGCTGGCCAAGGGTGAGGTGTCTTCTCTGCTAGAGAG TGGGGCCTTGAAGTCGTGGCAATATGTAGGCCTCAACCTACTTGTAGGTG AGAATATGTCCCGAATTATGTCTTTTTTTTTCCAAGCTGTTTTAATAAAT AAATAAATGGATCCCCTTCAGAGTGCAACAAATAAATCACTATTTTTTTA CACTCGGTTTTGCATCCCCTTTCCAGGCGTTTAACTGCTGGCTGTCCTTG TGGGGTTTTCCTCACTTTGGTGCAAGAGTAAGAATGCACATACCTTCCTC AATATTACTACTACGGTGTAAATGTCTTGCTTGGCAGGTGTTGTGGGATT CGGAATCAATCTGGTGGCCCTGTGGTGCATTGAATGCACCTCAGCATCCA CGTACAGCATCACAGGAAATCTTTCTAAGGTACACATTGCTCGTGCTCGT GTTCCGGGTGAAAGTATCTTAAAGAGGGTACGAGTGTTTTGCCCTGTTTT GTCAAAAAAAAATTGGGCTTGGGTTGCCGCAGGTTTCTTACGACATTTTA CCTACCACTCCGAAATGTCTCGGAACAGGCAACATGTACACGTCATGAAA AGGCGTCACCAAAACAAGGATATTGACACTTCCTTAACAAACACAATATA ACCGGAATTACAACAAGATCACAACATTTGGATTTCGGACCCCAAACGGA CGCGGCTCTACCATCTTAAGATACTTTTGACTCTCTGATGCAGAGGCCCC CCTCTTTCAGGTGTTGTAAATGTATGCGTGAACTGCGGGCCCTGTGAACG GTGATGTGCCTAGGTGTTATTTTTCCCAGAGTGATCAATCTCACGACAAC ACCATGTCATCTGTCCACAAGCAACTGCTTACCTGTCTGTCATCCGTCCT CTGACCACATCTATCGCCTCACTGCTGCTGCTGCTGCCTTTGGGTAGTGC TGCTAACCGAGAGAGCTTCCGTGCTTCTTGCCGTTTGTTTCAGATCCCAT CAACGATCATTGGGCGTTTCATGTTTGTAGGGAGGTCTGTGTCAAACAAC AATAGTGTCTGCGTTGGGATC
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Coding sequence (CDS) from alignment at C-tenellus_contig10423:230..4800-

>mRNA_C-tenellus_contig10423.1.2 ID=mRNA_C-tenellus_contig10423.1.2|Name=mRNA_C-tenellus_contig10423.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1224bp|location=Sequence derived from alignment at C-tenellus_contig10423:230..4800- (Choristocarpus tenellus KU2346)
ATGATAGATTGTGGAGAAATGAGCAAGGGTCTTCTTCCTGTACCACACCT
ACTATCCCCAACAGGCCGTAAACTTGTTGTCTGTGTGGAGATAGTTCATC
TCACACCGGTTGCCTCAAGCTTTTTCCTTCCCAACAAAGACACACGTCGA
TACTTACCAAAGAAGGGGACCTCGTGGTTGGAAACTGCAACGAAGATGGC
CAGCCCCACCACACAAAAGAGGCTAAAGCAAGGACCTTCTGGGGTCATAT
CCTGTCTAGCCTACAGCGCGTGTTCCATATCAATGGTGCTGGGTAATAAG
GCCTTGGCGACCTACGGTGTGGATGTGCATTTGCTCCCAGTTGTTTTTCA
GTGTTTTTTTGCGATGGTGATGACCAAGTTGCTGAGTGCAGTGGGCATTC
CCGGGCTTCATGCTGAGGCGATGAATCTGAAGACAGCAGTTTCCTGGTTA
CCAATAAACGTGCTTTTTTGCTCGATGCTCTTCACCAGCTTCATGGCTCT
CAAGTGGATAGAGATCCCCATGTTCCAGGTCTTCAAGACCTCTACAGTTG
TGTGGGTTACTATATTGGAATTCCTTCTATTTGGCGGCAAAGTGAATGCA
CACTGCTGTGCAGCTCTGACGCTGATTGTTGTTGGGGCAGCTGGGACAGT
GGTAACGGGCATCGATCTTCGGAATGGTTGGGGATTGTTCTGGATGGTAG
CTAATGTGTTTTCAACGGCCAGCTACATTATCTACTTGAAGTTTGCTACT
CGCTTCATCAAGCTCTCACGCTTAGGCATGGTGAAATACAACAACACTCT
GGGAGTGCTGCTGCTGGCCCCAGCAGTGCTGGCCAAGGGTGAGGTGTCTT
CTCTGCTAGAGAGTGGGGCCTTGAAGTCGTGGCAATATGTAGGCCTCAAC
CTACTTGTAGGTGTTGTGGGATTCGGAATCAATCTGGTGGCCCTGTGGTG
CATTGAATGCACCTCAGCATCCACGTACAGCATCACAGGAAATCTTTCTA
AGGTACACATTGCTCGTGCTCGTGTTCCGGGTGAAAGTATCTTAAAGAGG
GTACGAGTGTTTTGCCCTGTTTTGTCAAAAAAAAATTGGGCTTGGGTTGC
CGCAGGTTTCTTACGACATTTTACCTACCACTCCGAAATGTCTCGGAACA
GGCAACATGTACACGTCATGAAAAGGCGTCACCAAAACAAGGATATTGAC
ACTTCCTTAACAAACACAATATAA
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