mRNA_C-tenellus_contig10410.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10410.1.1
Unique NamemRNA_C-tenellus_contig10410.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10410.1.1 vs. uniprot
Match: D7FPT1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT1_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 1.270e-5
Identity = 21/25 (84.00%), Postives = 21/25 (84.00%), Query Frame = 1 
Query:   49 QLITADSDGICKLWDLRNFSCVQTF 123
            QLITAD DG CKLWDLR FSCV TF
Sbjct:  347 QLITADMDGFCKLWDLRTFSCVGTF 371
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BLAST of mRNA_C-tenellus_contig10410.1.1 vs. uniprot
Match: D7FPU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU5_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 2.340e-5
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:   49 QLITADSDGICKLWDLRNFSCVQTF 123
            +L+TAD+DG CKLWDLR FSC++TF
Sbjct:  181 KLVTADADGFCKLWDLRTFSCMETF 205
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BLAST of mRNA_C-tenellus_contig10410.1.1 vs. uniprot
Match: A0A7S3ZL49_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZL49_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.470e-5
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:   46 HQLITADSDGICKLWDLRNFSCVQTF 123
            H+LITAD+ G+ KLWDLR F CVQTF
Sbjct:  432 HELITADTTGVLKLWDLRTFGCVQTF 457
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BLAST of mRNA_C-tenellus_contig10410.1.1 vs. uniprot
Match: A0A7S3GQ56_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQ56_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 6.110e-5
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:   46 HQLITADSDGICKLWDLRNFSCVQTF 123
            H++ITAD+ G+ KLWD+RNF CVQTF
Sbjct:   53 HEVITADTSGVFKLWDVRNFMCVQTF 78
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BLAST of mRNA_C-tenellus_contig10410.1.1 vs. uniprot
Match: A0A7S3GL10_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GL10_9EUKA)

HSP 1 Score: 47.0 bits (110), Expect = 8.360e-5
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:   49 QLITADSDGICKLWDLRNFSCVQTF 123
            ++ITAD+DGI KLWD+RNF C+QTF
Sbjct:  472 EVITADADGIFKLWDMRNFMCIQTF 496
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BLAST of mRNA_C-tenellus_contig10410.1.1 vs. uniprot
Match: A0A2R5G3N2_9STRA (Coatomer subunit beta'-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3N2_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 8.370e-5
Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   40 NMHQLITADSDGICKLWDLRNFSCVQTF 123
            N  ++ITAD++G  K+WD+RNFSCVQTF
Sbjct:  426 NTPEIITADNEGFFKIWDIRNFSCVQTF 453
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10410.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FPT1_ECTSI1.270e-584.00EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FPU5_ECTSI2.340e-572.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3ZL49_9STRA4.470e-573.08Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3GQ56_9STRA6.110e-569.23Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3GL10_9EUKA8.360e-572.00Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A2R5G3N2_9STRA8.370e-564.29Coatomer subunit beta'-1 n=1 Tax=Hondaea fermental... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10410contigC-tenellus_contig10410:807..929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPT1
Preferred nameWDR49
PFAMsDnaJ,NACHT,WD40
Model size123
Max annot lvl2759|Eukaryota
KEGG koko:K12811
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.09e-06
EggNOG OGsKOG0267@1|root,KOG0267@2759|Eukaryota
EC3.6.4.13
Descriptionmicrotubule severing
Cds size123
COG categoryE
BRITEko00000,ko00001,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.3946843-CDS-C-tenellus_contig10410:806..9291680789130.3946843-CDS-C-tenellus_contig10410:806..929Choristocarpus tenellus KU2346CDSC-tenellus_contig10410 807..929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10410.1.1prot_C-tenellus_contig10410.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10410 807..929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10410.1.1

>prot_C-tenellus_contig10410.1.1 ID=prot_C-tenellus_contig10410.1.1|Name=mRNA_C-tenellus_contig10410.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=41bp
PEDLTVPALSTDANMHQLITADSDGICKLWDLRNFSCVQTF
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mRNA from alignment at C-tenellus_contig10410:807..929-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10410.1.1 ID=mRNA_C-tenellus_contig10410.1.1|Name=mRNA_C-tenellus_contig10410.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=123bp|location=Sequence derived from alignment at C-tenellus_contig10410:807..929- (Choristocarpus tenellus KU2346)
CCTGAGGACCTCACGGTCCCTGCTCTTTCCACCGATGCCAACATGCACCA
GCTAATAACTGCAGATTCGGATGGCATTTGCAAACTGTGGGATCTGCGCA
ACTTTTCGTGTGTCCAGACATTT
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Coding sequence (CDS) from alignment at C-tenellus_contig10410:807..929-

>mRNA_C-tenellus_contig10410.1.1 ID=mRNA_C-tenellus_contig10410.1.1|Name=mRNA_C-tenellus_contig10410.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=123bp|location=Sequence derived from alignment at C-tenellus_contig10410:807..929- (Choristocarpus tenellus KU2346)
CCTGAGGACCTCACGGTCCCTGCTCTTTCCACCGATGCCAACATGCACCA
GCTAATAACTGCAGATTCGGATGGCATTTGCAAACTGTGGGATCTGCGCA
ACTTTTCGTGTGTCCAGACATTT
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