mRNA_C-tenellus_contig10398.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10398.1.1
Unique NamemRNA_C-tenellus_contig10398.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10398.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10398contigC-tenellus_contig10398:197..706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog45351.EDO45444
Model size510
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.42e-07
EggNOG OGsKOG3513@1|root,KOG3513@2759|Eukaryota,3ASYQ@33154|Opisthokonta,3C4UM@33208|Metazoa
DescriptionCell adhesion molecule
Cds size510
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789129.6120865-CDS-C-tenellus_contig10398:196..7061680789129.6120865-CDS-C-tenellus_contig10398:196..706Choristocarpus tenellus KU2346CDSC-tenellus_contig10398 197..706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10398.1.1prot_C-tenellus_contig10398.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10398 197..706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10398.1.1

>prot_C-tenellus_contig10398.1.1 ID=prot_C-tenellus_contig10398.1.1|Name=mRNA_C-tenellus_contig10398.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=170bp
WQAQQYNHCKARLPKGHAAISMDFSAHLQHNHQDLTQQEFFNLFLTSLLT
IVWSLTDFREEGNLGNGRVWTHSMTVCSEDQSQDNEFVQNAVEMLVKDPL
IPLACEYGQTLEVLHIWSDDCGSQFKNRWRMWCVSQSLARMGISVVHNFF
ASCHGKSFSDGVGAVVKSAA
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mRNA from alignment at C-tenellus_contig10398:197..706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10398.1.1 ID=mRNA_C-tenellus_contig10398.1.1|Name=mRNA_C-tenellus_contig10398.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=510bp|location=Sequence derived from alignment at C-tenellus_contig10398:197..706+ (Choristocarpus tenellus KU2346)
TGGCAGGCGCAACAATACAACCACTGCAAAGCCCGCCTCCCCAAAGGACA
TGCCGCCATATCCATGGACTTCAGCGCCCACCTGCAACACAACCACCAGG
ACTTGACACAACAAGAGTTCTTCAACCTATTCCTTACGTCGCTTCTGACC
ATTGTCTGGTCGTTGACGGATTTCAGAGAAGAGGGAAATCTCGGGAATGG
AAGGGTTTGGACTCACAGCATGACGGTGTGCAGTGAAGATCAAAGCCAGG
ACAACGAGTTCGTCCAGAACGCTGTGGAGATGCTTGTGAAGGACCCCCTA
ATACCTCTAGCTTGTGAATACGGTCAGACTCTAGAAGTCCTGCACATTTG
GTCTGATGACTGCGGGAGTCAATTCAAGAACAGATGGAGGATGTGGTGCG
TTTCACAGTCTTTAGCGCGGATGGGAATTTCCGTGGTACACAATTTCTTT
GCCTCATGCCACGGGAAGTCCTTTTCTGATGGAGTCGGGGCTGTGGTGAA
GTCTGCCGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig10398:197..706+

>mRNA_C-tenellus_contig10398.1.1 ID=mRNA_C-tenellus_contig10398.1.1|Name=mRNA_C-tenellus_contig10398.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=510bp|location=Sequence derived from alignment at C-tenellus_contig10398:197..706+ (Choristocarpus tenellus KU2346)
TGGCAGGCGCAACAATACAACCACTGCAAAGCCCGCCTCCCCAAAGGACA
TGCCGCCATATCCATGGACTTCAGCGCCCACCTGCAACACAACCACCAGG
ACTTGACACAACAAGAGTTCTTCAACCTATTCCTTACGTCGCTTCTGACC
ATTGTCTGGTCGTTGACGGATTTCAGAGAAGAGGGAAATCTCGGGAATGG
AAGGGTTTGGACTCACAGCATGACGGTGTGCAGTGAAGATCAAAGCCAGG
ACAACGAGTTCGTCCAGAACGCTGTGGAGATGCTTGTGAAGGACCCCCTA
ATACCTCTAGCTTGTGAATACGGTCAGACTCTAGAAGTCCTGCACATTTG
GTCTGATGACTGCGGGAGTCAATTCAAGAACAGATGGAGGATGTGGTGCG
TTTCACAGTCTTTAGCGCGGATGGGAATTTCCGTGGTACACAATTTCTTT
GCCTCATGCCACGGGAAGTCCTTTTCTGATGGAGTCGGGGCTGTGGTGAA
GTCTGCCGCC
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