mRNA_C-tenellus_contig10391.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10391.1.1
Unique NamemRNA_C-tenellus_contig10391.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Match: D8LHK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK6_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 4.600e-38
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 1
Query:    1 SWVPEILKHKRLRVVFTTEIHGYNLNLLYSHCRTVAPSLLVVEASNGAIFGGFCSHPWQ-PH-----NAIFGNGQCFLFRLNPNAATFRW 252
             WVPEIL+HKRLRVVFTTEIHGYNL+LLYSHCRTV+PSLLVVEA+NG I GGFCS  WQ PH       ++GNGQCFLFRL+P   T RW
Sbjct:  397 KWVPEILRHKRLRVVFTTEIHGYNLDLLYSHCRTVSPSLLVVEAANGVILGGFCSDSWQYPHAKQSQGGMYGNGQCFLFRLHPQPTTCRW 486          
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Match: A0A7S2LZ67_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LZ67_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.790e-15
Identity = 33/87 (37.93%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 SWVPEILKHKRLRVVFTTEIHGYNLNLLYSHCRTVAPSLLVVEA---SNGAIFGGFCSHPWQPHNAIFGNGQCFLFRLNPNAATFRW 252
             W+P  LK  +L ++++TEIHG +L   Y+ C     +++++EA   S  A  G F SH W  + A +G+G+CFLFR++P+   F W
Sbjct:  402 KWLPVSLKTTKLDLIYSTEIHGRSLAAFYNQCNRYKNTIVLIEAIVGSTTATIGMFASHAWNVNPASYGDGECFLFRVDPDPKCFNW 488          
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Match: A0A7S2R253_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R253_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.810e-15
Identity = 28/84 (33.33%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    4 WVPEILKHKRLRVVFTTEIHGYNLNLLYSHCRTVAPSLLVVEA-SNGAIFGGFCSHPWQPHNAIFGNGQCFLFRLNPNAATFRW 252
            W+P  L++ +L ++++T +HG ++   Y HC+    +L ++E    GA  G + +  W  +  ++G+G+CFLFRLNPN  +++W
Sbjct:  428 WLPIPLQNTKLDIIYSTNVHGRSVETFYKHCKNSKHTLTIMEVLKTGARIGMYAAQTWHFNTKVYGDGECFLFRLNPNPISYKW 511          
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Match: B8C4J4_THAPS (TLDc domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4J4_THAPS)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-14
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 SWVPEILKHKRLRVVFTTEIHGYNLNLLYSHCRTVAPSLLVVEASNGAI---FGGFCSHPWQPHNAIFGNGQCFLFRLNPNAATFRW 252
             W+   LK  +L ++++TE+HG +L  LY  CR    ++++VEA  G I    G F S  W  + + FG+G+CFLFR++P    F W
Sbjct:  164 KWLTTSLKSTKLDLIYSTEVHGRSLAALYKECRRTKHTIILVEAITGDISTTIGMFASQAWVVNPSCFGDGECFLFRVDPAPKCFNW 250          
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Match: A0A0L0HMA4_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HMA4_SPIPD)

HSP 1 Score: 73.9 bits (180), Expect = 1.590e-13
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 SWVPEILKHKRLRVVFTTEIHGYNLNLLYSHCRTVAPSLLVVEASNGAIFGGFCSHPW----QPHNAIFGNGQCFLFRLNPNAATFRW 252
            SW+P   + + L ++FTT+ HG ++N L+      AP +L+VE + GA+FG F SH W    +     +GNG+ FLF L P A  + W
Sbjct:  378 SWIPPSKRVEGLELLFTTKEHGTHVNNLFRRTDDRAPLILLVETTEGAVFGAFLSHAWPGEGERTGEWYGNGETFLFTLEPYAKLYPW 465          
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Match: T0QKD0_SAPDV (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0QKD0_SAPDV)

HSP 1 Score: 72.0 bits (175), Expect = 5.350e-13
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   37 RVVFTTEIHGYNLNLLYSHCRTVAPSLLVVEASNGAIFGGFCSHPWQPHNAIFGNGQCFLFRLNPNAATFRW 252
            ++ ++   HG +L  LY + R   P+++VVE S+G +FG F S PW P  + +G G+CFLF   P+   F W
Sbjct:  194 KIAYSLAQHGASLGTLYRNVRGKRPTIVVVETSDGDVFGAFASMPWSPSTSYYGTGECFLFTCYPSFEHFAW 265          
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Match: A0A507DXW7_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DXW7_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 5.550e-13
Identity = 31/88 (35.23%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    1 SWVPEILKHKRLRVVFTTEIHGYNLNLLYSHCRTVAPSLLVVEASNGAIFGGFCSHPW----QPHNAIFGNGQCFLFRLNPNAATFRW 252
            SW+P   + + L ++FTT+ HG ++  L++      P +LV+  + GA+FG + SHPW    +     +GNG+ FLF L P A  + W
Sbjct:  379 SWIPPAKRVEGLELLFTTKEHGSHITNLFNRSEDRFPLILVMSTTEGAVFGAYLSHPWPAPDEKKGEWYGNGETFLFTLEPYAKLYPW 466          
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Match: A0A7S1D074_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D074_CYCTE)

HSP 1 Score: 66.6 bits (161), Expect = 5.880e-12
Identity = 27/78 (34.62%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 SWVPEILKHKRLRVVFTTEIHGYNLNLLYSHCRTVAPSLLVVEA-SNGAIFGGFCSHPWQPHNAIFGNGQCFLFRLNP 231
            +W+P  L+  +L ++++T +HG  L   Y   +    ++L+ E  +N A+ G F S  W+  N ++G+G+CFLFRL+P
Sbjct:   71 TWLPLSLRLTKLDLLYSTNVHGRTLESFYYRVKKTGHTILLCEVLNNDAVIGMFASQHWRISNKVYGDGECFLFRLSP 148          
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Match: A0A1Z5JC52_FISSO (TLDc domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JC52_FISSO)

HSP 1 Score: 68.9 bits (167), Expect = 9.240e-12
Identity = 28/89 (31.46%), Postives = 50/89 (56.18%), Query Frame = 1
Query:    1 SWVPEILKHKRLRVVFTTEIHGYNLNLLYSHCRTVAPSLLVVEA-----SNGAIFGGFCSHPWQPHNAIFGNGQCFLFRLNPNAATFRW 252
            +W+P  L+   L ++F+T  HG +L + Y+  +    ++L+ E      S   I G + S PW+P   ++G+G CFLFR+ P+   ++W
Sbjct:  420 AWMPLTLRMVNLNLLFSTNCHGRSLGMFYNRVQRAKHTILLCEVLSSTKSELTIVGFYASQPWRPSPKVYGDGSCFLFRVQPDPRCWKW 508          
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Match: B7FZL6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZL6_PHATC)

HSP 1 Score: 68.2 bits (165), Expect = 1.720e-11
Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    1 SWVPEILKHKRLRVVFTTEIHGYNLNLLYSHCRTVAPSLLVVE------ASNGA--IFGGFCSHPWQPHNAIFGNGQCFLFRLNPNAATFRW 252
            +W+P  ++   L ++++T  HG +L   YSH +T   + ++ E      ASNG   I G + S  W+    ++G+G+CFLFRL+P+A  + W
Sbjct:  416 TWLPLAMRLTNLDLLYSTNYHGRSLERFYSHVKTSKHTFVLCEVLDGSVASNGTPTIVGMYASQAWRASPRVYGDGECFLFRLSPDAECWTW 507          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10391.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK6_ECTSI4.600e-3873.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2LZ67_9STRA3.790e-1537.93Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2R253_9STRA3.810e-1533.33Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B8C4J4_THAPS2.360e-1437.93TLDc domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A0L0HMA4_SPIPD1.590e-1338.64Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
T0QKD0_SAPDV5.350e-1338.89Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A507DXW7_9FUNG5.550e-1335.23Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A7S1D074_CYCTE5.880e-1234.62Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A1Z5JC52_FISSO9.240e-1231.46TLDc domain-containing protein n=2 Tax=Fistulifera... [more]
B7FZL6_PHATC1.720e-1133.70Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10391contigC-tenellus_contig10391:4084..4717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHK6
Preferred nameTBC1D24
PFAMsRabGAP-TBC,TLD
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K21841
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0008047,GO:0008150,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010605,GO:0010646,GO:0010647,GO:0010720,GO:0010769,GO:0010770,GO:0010941,GO:0010975,GO:0010976,GO:0016020,GO:0016043,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030234,GO:0030334,GO:0030335,GO:0030424,GO:0030695,GO:0031175,GO:0031323,GO:0031324,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031594,GO:0031644,GO:0031646,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0033267,GO:0040012,GO:0040017,GO:0042391,GO:0042995,GO:0043005,GO:0043085,GO:0043087,GO:0043195,GO:0043547,GO:0043679,GO:0044057,GO:0044093,GO:0044306,GO:0044424,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050804,GO:0050806,GO:0051049,GO:0051051,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060341,GO:0060548,GO:0060589,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0098693,GO:0098772,GO:0098793,GO:0098815,GO:0098916,GO:0099177,GO:0099536,GO:0099537,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0150034,GO:1900006,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1902083,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903203,GO:1903204,GO:1903421,GO:1903422,GO:2000026,GO:2000145,GO:2000147,GO:2000169,GO:2000463,GO:2001222,GO:2001224
Exons2
Evalue7.54e-39
EggNOG OGsCOG5142@1|root,KOG2801@2759|Eukaryota
DescriptionGTPase activator activity
Cds size252
COG categoryL
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789129.5688148-CDS-C-tenellus_contig10391:4083..41581680789129.5688148-CDS-C-tenellus_contig10391:4083..4158Choristocarpus tenellus KU2346CDSC-tenellus_contig10391 4084..4158 -
1680789129.5792427-CDS-C-tenellus_contig10391:4540..47171680789129.5792427-CDS-C-tenellus_contig10391:4540..4717Choristocarpus tenellus KU2346CDSC-tenellus_contig10391 4541..4717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10391.1.1prot_C-tenellus_contig10391.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10391 4084..4717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10391.1.1

>prot_C-tenellus_contig10391.1.1 ID=prot_C-tenellus_contig10391.1.1|Name=mRNA_C-tenellus_contig10391.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=84bp
SWVPEILKHKRLRVVFTTEIHGYNLNLLYSHCRTVAPSLLVVEASNGAIF
GGFCSHPWQPHNAIFGNGQCFLFRLNPNAATFRW
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mRNA from alignment at C-tenellus_contig10391:4084..4717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10391.1.1 ID=mRNA_C-tenellus_contig10391.1.1|Name=mRNA_C-tenellus_contig10391.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=634bp|location=Sequence derived from alignment at C-tenellus_contig10391:4084..4717- (Choristocarpus tenellus KU2346)
AGTTGGGTGCCTGAGATCTTGAAGCATAAACGCCTCCGTGTTGTGTTCAC AACTGAGATACATGGGTACAACCTCAACCTCTTGTACAGCCACTGCAGGA CAGTGGCACCATCTCTACTGGTCGTGGAAGCCAGCAATGGGGCGATTTTT GGGGGCTTCTGCTCTCATCCTTGGCAGGTTGGTTCCAGTAGCATCACAAT GTAGGGGTGGAAGGAGAGATCTGTACCAGCAGCACCTGGCTGTGAGATTT TTGGGAGTTGAAATGTGCAAAGTTGATGCATTTTTCAGATGGTGATAGGC ACTGTGGAACCTGGATTGGACATTCATCATCCTGCAGGACCAGTTGTGTG CCGATCTTTTGTCTGGTTGTGTTGTAGGGTGATCTTTGAATATGAACATC AAACGATTCAAATACAACAGCGCATGACTAGCCATAGTTTTGGGGGGGGG ATTCCTCATCAGTCTGTCATGCATCCACCTCATCCGTGTTCTGAACTATG TTTCTCCCCCCCTCCCCTCACCTCCCCCCATGCCCTCGTCTCTACTTTGT CCCCCCTAGCCGCACAATGCCATTTTTGGCAATGGGCAGTGCTTCTTATT TCGCCTCAACCCCAATGCAGCCACGTTCCGATGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10391:4084..4717-

>mRNA_C-tenellus_contig10391.1.1 ID=mRNA_C-tenellus_contig10391.1.1|Name=mRNA_C-tenellus_contig10391.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=252bp|location=Sequence derived from alignment at C-tenellus_contig10391:4084..4717- (Choristocarpus tenellus KU2346)
AGTTGGGTGCCTGAGATCTTGAAGCATAAACGCCTCCGTGTTGTGTTCAC
AACTGAGATACATGGGTACAACCTCAACCTCTTGTACAGCCACTGCAGGA
CAGTGGCACCATCTCTACTGGTCGTGGAAGCCAGCAATGGGGCGATTTTT
GGGGGCTTCTGCTCTCATCCTTGGCAGCCGCACAATGCCATTTTTGGCAA
TGGGCAGTGCTTCTTATTTCGCCTCAACCCCAATGCAGCCACGTTCCGAT
GG
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