mRNA_C-tenellus_contig10361.3.1 (mRNA) Choristocarpus tenellus KU2346
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match: D8LRW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRW0_ECTSI) HSP 1 Score: 149 bits (376), Expect = 4.460e-41 Identity = 78/154 (50.65%), Postives = 106/154 (68.83%), Query Frame = 1 Query: 193 GILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHLILTEVQGERCSLDSLGEGYK---------------------NNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKDH 591 G+++S FQ+RVAA MAVE+EK+GKMKTRSLPSE++WSLSGSKN++ LQTFCV + LL+ AIG++E +L +L +++G+ C L+ LGEG + + RERLK LYKI+++EL + S+EDCVV RMAVKDH Sbjct: 42 GLVLSVFQLRVAAAMAVEKEKAGKMKTRSLPSEMVWSLSGSKNITGTLQTFCVQEVDDADLLVAAIGIDEDDLRSVLADIKGQPCGLERLGEGLRPVDGGVGDGQQQXXXQRWQGGDASKWRERLKKLYKITEEELAVNSLEDCVVMRMAVKDH 195
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match: Q4SDW1_TETNG ((spotted green pufferfish) hypothetical protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4SDW1_TETNG) HSP 1 Score: 79.0 bits (193), Expect = 4.080e-14 Identity = 53/133 (39.85%), Postives = 82/133 (61.65%), Query Frame = 1 Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAI--GMEEHELHLILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588 ++V+ FQV VAA AV +K+GKMKTRSL SE+++SLS + N+S + F + DG+ ++L+V + G E L I T V GE+ ++ + +ER+K LYK++ E + ++ D VV RMA+KD Sbjct: 71 MVVNGFQVLVAANRAVSLQKTGKMKTRSLYSEIIFSLSPTNNISEAFKRFGIS-DGDDSVLVVLVHGGDEPQLLSDIKTMVDGEQVPVEDISLLTD-----QERIKKLYKVTPQEEKCGTLLDAVVCRMAIKD 197
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match: A0A5C6NG75_9TELE (EKC/KEOPS complex subunit n=3 Tax=Takifugu TaxID=31032 RepID=A0A5C6NG75_9TELE) HSP 1 Score: 77.4 bits (189), Expect = 9.220e-14 Identity = 49/133 (36.84%), Postives = 84/133 (63.16%), Query Frame = 1 Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588 ++V++FQV VAA AV +K+GKMKTRSL SE+++SLS + N+S + F + DG+ ++LLV + E+ L I + V G++ ++ + ++ +E++K YK++ E + ++ D VV RMA+KD Sbjct: 47 MVVNSFQVLVAANKAVHLQKTGKMKTRSLYSEIIFSLSPTNNISEAFKRFGI-ADGDDSVLLVLVHSEDESQLLADIKSMVNGQQVPVEDV-----SSLTDQEKIKKFYKVTPQEEKCGTLLDAVVCRMAIKD 173
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match: A0A665WYM0_ECHNA (TP53RK binding protein n=2 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665WYM0_ECHNA) HSP 1 Score: 77.0 bits (188), Expect = 1.280e-13 Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 1 Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLD---SLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588 +LVS FQV VAA AV +K GKMKTRSL SE++++LS + N+S + F + DG+ ++L+V + ++ HL I +V G + +D SL + K ++ LYK++ E + ++ D VV RMA+KD Sbjct: 47 MLVSPFQVLVAANKAVHSQKIGKMKTRSLYSEIIFNLSPTNNISEAFKRFGI-ADGDESVLVVLVHNKDESHHLADITAQVDGLQVPVDEVSSLSDSAK--------IRKLYKVTPQEEKCGTLLDAVVCRMAIKD 173
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match: A0A7K4KH16_9AVES (TPRKB protein (Fragment) n=9 Tax=Tinamidae TaxID=8803 RepID=A0A7K4KH16_9AVES) HSP 1 Score: 74.7 bits (182), Expect = 3.260e-13 Identity = 50/132 (37.88%), Postives = 82/132 (62.12%), Query Frame = 1 Query: 199 LVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588 +V FQV VAA AV K GKMKTR+L +E++++LS + N+S L+ F V D + +L+V I E ++L ++++V+G++ SLD L + E++K +YKI+ E ++ ++ D +V RMA KD Sbjct: 3 IVDPFQVLVAANKAVHLHKIGKMKTRTLYTEVIFNLSPNNNISDALKKFGVS-DSDTAVLIVLIVDTEKPVNLEEVVSQVEGQQVSLDELPQLTDI-----EKVKKIYKITPQEEKIGTLLDSIVCRMATKD 128
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match: A0A7L4DK25_9AVES (TPRKB protein (Fragment) n=1 Tax=Eurystomus gularis TaxID=325343 RepID=A0A7L4DK25_9AVES) HSP 1 Score: 75.5 bits (184), Expect = 4.750e-13 Identity = 47/133 (35.34%), Postives = 80/133 (60.15%), Query Frame = 1 Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588 ++V FQ+ VAA AV K GKMKTRSL +E+++SLS S N+S + F + D + +L+V + E ++L + ++V+G++ SLD L + R+K +YK++ E ++ ++ D +V RM+ KD Sbjct: 47 MIVDPFQILVAANKAVHLHKIGKMKTRSLYAEIIFSLSPSNNISEAFKKFGIS-DSDTAVLIVLVADGEKTINLEDVTSQVEGQQVSLDELPQLTDTA-----RVKKMYKVTPQEEKIGTLLDSIVCRMSTKD 173
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match: A0A7L2S1F9_9PASS (TPRKB protein (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7L2S1F9_9PASS) HSP 1 Score: 73.9 bits (180), Expect = 6.160e-13 Identity = 47/132 (35.61%), Postives = 81/132 (61.36%), Query Frame = 1 Query: 199 LVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588 +V FQ+ VAA AV +K GKMKTR+L +E+++SLS S N+S + F + DG+ +L+V + + ++L I ++V+G++ SLD L + ++K +YK++ E ++ ++ D VV RM+ KD Sbjct: 2 IVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFGIS-DGDTAVLIVLVVDGDKSVNLADITSQVEGQQVSLDELPQLTDTA-----KVKKMYKVTPQEEKIGTLLDSVVCRMSTKD 127
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match: A0A7L2VES5_9AVES (TPRKB protein (Fragment) n=1 Tax=Brachypteracias leptosomus TaxID=135165 RepID=A0A7L2VES5_9AVES) HSP 1 Score: 75.1 bits (183), Expect = 6.590e-13 Identity = 46/133 (34.59%), Postives = 82/133 (61.65%), Query Frame = 1 Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588 ++V FQV VAA AV K GKMKTR+L +E+++SLS S N+S + F + D + +L+V + E ++L + ++V+G++ SLD L + + R+K +YK++ E +++++ D +V R++ KD Sbjct: 47 VIVDPFQVLVAANKAVHLHKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFGIS-DSDTAVLIVLVADREKTVNLEDLASQVEGQQVSLDELPQLTDTD-----RVKKMYKVTPQEEKVSTLLDSIVCRISTKD 173
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match: UPI001ED8648E (EKC/KEOPS complex subunit TPRKB n=2 Tax=Eupercaria TaxID=1489922 RepID=UPI001ED8648E) HSP 1 Score: 74.7 bits (182), Expect = 9.730e-13 Identity = 50/136 (36.76%), Postives = 83/136 (61.03%), Query Frame = 1 Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLD---SLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588 +LV++FQV VAA AV +K+GKMKTRSL SE++++LS + N+S + F + DG+ ++L+V + E+ L I V G++ ++ SL + +E++K LYK++ E + ++ D V+ RMA KD Sbjct: 50 MLVNSFQVLVAANKAVNLQKNGKMKTRSLYSEIIFNLSPTNNISEAFKRFGIS-DGDESVLVVLVHNEDESQLLSDIAAMVNGQQVPVEDVPSLSD--------QEKIKKLYKVTPQEEKCGTLLDAVICRMATKD 176
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match: A0A7L1YPX0_9PASS (TPRKB protein (Fragment) n=6 Tax=Passeriformes TaxID=9126 RepID=A0A7L1YPX0_9PASS) HSP 1 Score: 74.3 bits (181), Expect = 1.270e-12 Identity = 47/133 (35.34%), Postives = 81/133 (60.90%), Query Frame = 1 Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588 ++V FQ+ VAA AV K GKMKTRSL +E+++SLS + N+S + F + D + +L+V + + ++L I ++V+G++ SLD L + R+K +YK++ E +++++ D VV RM+ KD Sbjct: 47 MIVDPFQILVAANKAVHLHKIGKMKTRSLYAEIIFSLSPNNNISDAFKKFGIS-DSDTAVLIVLVVDSDKTVNLEAIASQVEGQQVSLDELAQLTDTA-----RIKKMYKVTPQEEKISTLLDSVVCRMSTKD 173 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10361.3.1 >prot_C-tenellus_contig10361.3.1 ID=prot_C-tenellus_contig10361.3.1|Name=mRNA_C-tenellus_contig10361.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp MAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVback to top mRNA from alignment at C-tenellus_contig10361:1173..2650- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10361.3.1 ID=mRNA_C-tenellus_contig10361.3.1|Name=mRNA_C-tenellus_contig10361.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1478bp|location=Sequence derived from alignment at C-tenellus_contig10361:1173..2650- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10361:1173..2650- >mRNA_C-tenellus_contig10361.3.1 ID=mRNA_C-tenellus_contig10361.3.1|Name=mRNA_C-tenellus_contig10361.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig10361:1173..2650- (Choristocarpus tenellus KU2346)back to top |