mRNA_C-tenellus_contig10359.2.8 (mRNA) Choristocarpus tenellus KU2346
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A6B2LCC5_9EUKA (RING-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCC5_9EUKA) HSP 1 Score: 209 bits (533), Expect = 1.010e-61 Identity = 104/245 (42.45%), Postives = 156/245 (63.67%), Query Frame = 3 Query: 234 LECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEESMSSVNRLHSVLRMLAPNLLGRLEVGCSGLSPLHGFCRKLPPKARF 968 ++C +C+N++ EPI++ CGHTFCR C V A QR+QKKCP CRAV + A +Q++NV +A+I + C+P Q +RL E +E ++ KQ+ PIF++N +FPG L LH+FE RYK+M+ R++ +RKF Y+PN+TN++ + GDV + A+V C FL DGR LLQARI+ R + +S VE T L +CQ E D+P N++ + + ++ NL L GF ++L P +F Sbjct: 1 MDCTICLNMLVEPISVPCGHTFCRTCLVAAQQRAQKKCPVCRAVCVIDATAQKENVQLASILKTCFPKQYAERLKEVEETKKTWKQNLPIFFFNDTLFPGGVLKLHLFEERYKLMIKRVLEGNRKFVYLPNFTNYKASKGDVGVVAEVLECRFLHDGRALLQARIVERAVVADSWVEDGTGNLAYCQYELFKDEPENDDQLQEL--------LVTANL---------SLERFKGFVQRLEPIRQF 228
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A6V3MPG8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3MPG8_9EUKA) HSP 1 Score: 209 bits (532), Expect = 4.290e-61 Identity = 107/221 (48.42%), Postives = 153/221 (69.23%), Query Frame = 3 Query: 201 ACHSTSVPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQ----VEDLNDDPVNEESMSSVNR 851 A S S+ ML C +C+NLVC+PIT+ CGHTFCR+C A+QRS+KKCP+CRAV S NVM+A I Q C+P Q EQRLLE+++E+ + + + PIF+YN +FPG L LH+FE RY+ M++R ++++RKF Y+PN+T+++ GDV L A + C+FL DGR LL+A I R K+ N+ VE T GL +CQ VE+ D V+EE +++V++ Sbjct: 22 ASSSASIEADMLTCPLCLNLVCQPITVPCGHTFCRVCLYMAMQRSKKKCPNCRAVCHVEPASHAVNVMLAQIAQKCFPKQYEQRLLESKQEQEKFESTSPIFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRKFIYLPNFTDYKAKTGDVGLLAYIDECEFLPDGRALLKATIQKRVKVTNTWVEEGTQGLHYCQFHPYVEE--DKTVDEEELNAVHK 240
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A482RY16_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY16_9ARCH) HSP 1 Score: 203 bits (517), Expect = 1.780e-59 Identity = 97/220 (44.09%), Postives = 143/220 (65.00%), Query Frame = 3 Query: 234 LECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEESMSSVNRLHSVLRMLAPNLLG 893 L+C +C++LVCEPI++ CGHTFCR+C V A++R +K+CP+CR V A++ +N+M+ + P RLLE + E+ +PIFYYN +FPG+KL+L +FEPRYK+M+ RI+ T+R F YVPN+TN+ GDV L ++ +FL DGR LL+ ++SRQ+I +VE T GL +C++E L DD + E+ + L LR L +L G Sbjct: 37 LDCSLCLSLVCEPISISCGHTFCRVCLVKALRRHKKQCPTCREVCHVSAENAAENIMVKTLAMALDPETYRSRLLEAEGEKSSWTALYPIFYYNSILFPGNKLSLVLFEPRYKLMMRRIIDTTRSFAYVPNFTNYHARVGDVALVVELKEVEFLADGRCLLEGLLVSRQRIAEHYVEQGTQGLHYCRLESLRDDGLGEQRRQQADYLSQQLRTLLASLGG 256
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A7S0CSC1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CSC1_9EUKA) HSP 1 Score: 195 bits (495), Expect = 1.050e-55 Identity = 98/228 (42.98%), Postives = 148/228 (64.91%), Query Frame = 3 Query: 210 STSVPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVE--DLNDDPVNEESMSSVNRLHSVLRMLAPNL 887 ST + ML+C +C+ +VCEPIT+ CGHTFCR C A+QR++KKCP+CRAV S NVM+ANI Q C+P + ++R E + +++ + + PIF+YN +FPG L LH+FE RY+ M++R ++++R+F Y+PN+++++ GDV L A V C+FL DGR LL+A ++ R I NS VE T GL +CQ + + D V E + ++ +V+ AP L Sbjct: 22 STRIEQDMLQCSLCLGIVCEPITIPCGHTFCRSCLYLAMQRTKKKCPNCRAVCHVDPSSHSVNVMLANIAQKCFPKEYKKRAEECKALKQKFQTTLPIFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRQFLYLPNFSDYKATAGDVGLLAYVDECEFLSDGRALLKATLVKRVVITNSWVEEGTQGLHYCQYQAYEETDKTVKEADVKEIHAKVNVILQSAPGL 249
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A835ZAH9_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAH9_9STRA) HSP 1 Score: 194 bits (494), Expect = 1.090e-55 Identity = 99/226 (43.81%), Postives = 144/226 (63.72%), Query Frame = 3 Query: 306 LCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEESMSSVNRLHSVLRMLAPNLLGRLEVGCSGLSPLHGFCRKLPPKARFQRSSV 983 +C V + R++K+CP+CRAV +CA Q +NVM+A I + +P +RL ETQ E+ L+ PIFYYN+PMFPG+ L+LH+FEPRY++M+ RI+ T+R+F YVPNYTN++ + GDV L A+V CDF DGR L A ++ R +I + +VE THGL +CQ+E L D+P+ V L + ++LG + S + HG ++PP AR Q S+ Sbjct: 1 MCLVKTLTRTKKRCPTCRAVCHNCAQDQPENVMVAQIARAAFPQLYLERLRETQTEKAALRSIHPIFYYNVPMFPGEILSLHLFEPRYRLMMRRIIDTTRRFVYVPNYTNYEASIGDVALIAEVKDCDFQSDGRCYLSATLIGRSRITDHYVEDGTHGLNYCQLETLVDEPIQPHEARFVTTLVQPIANFVSSVLGPIH---SDVVKTHG---EMPPVAREQEFSL 220
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A6V3MRR6_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3MRR6_9EUKA) HSP 1 Score: 189 bits (479), Expect = 1.190e-54 Identity = 92/182 (50.55%), Postives = 129/182 (70.88%), Query Frame = 3 Query: 201 ACHSTSVPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKI 746 A S S+ ML C +C+NLVC+PIT+ CGHTFCR+C A+QRS+KKCP+CRAV S NVM+A I Q C+P Q EQRLLE+++E+ + + + PIF+YN +FPG L LH+FE RY+ M++R ++++RKF Y+PN+T+++ GDV L A + C+FL DGR LL+A I R K+ Sbjct: 22 ASSSASIEADMLTCPLCLNLVCQPITVPCGHTFCRVCLYMAMQRSKKKCPNCRAVCHVEPASHAVNVMLAQIAQKCFPKQYEQRLLESKQEQEKFESTSPIFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRKFIYLPNFTDYKAKTGDVGLLAYIDECEFLPDGRALLKATIQKRVKV 203
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A4D9DDG8_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDG8_9STRA) HSP 1 Score: 189 bits (481), Expect = 6.480e-53 Identity = 97/217 (44.70%), Postives = 142/217 (65.44%), Query Frame = 3 Query: 234 LECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNS-HVELDTHGLQFCQVEDLNDD-PVNEESMSSVNRLHSVLRMLA 878 LECGVC+ L+CE +T CGH+ CRLC V A+QR Q KCP CRAV + A+ + ++ + + +P EQRL ET++ER LK PIF+YNLP+FPG+ L LH+FEPRY++M+ RI+ SR+F YVPNY+N++ GD+ L A++ F+ DGR L+ARI R I +VE T GL +C++++L D+ P + E+ ++ + R +A Sbjct: 94 LECGVCLGLLCEAVTTPCGHSLCRLCLVRALQR-QTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREMA 309
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A6H5KHS7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS7_9PHAE) HSP 1 Score: 183 bits (464), Expect = 2.360e-50 Identity = 96/251 (38.25%), Postives = 148/251 (58.96%), Query Frame = 3 Query: 174 TAKRPRSKKACHSTSVPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAV--SLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYV-----PNYTNFQVANGD----VLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEESMSSVNRLHSVLRMLAPNLLG 893 +A++ ++K + S L C C+ L+ EP++L CGHTFCR+C V ++R K+CPSC A + A+ Q QNVM+A I + +P LE+RL ET+ E+ + + P F+Y++P+FPG L +H FEPRYK+M+ RI+ TSR+F YV P+ TN N D + L+A VC +FL D RV+++ ++ R ++ VE T L +CQ+E +DDP+ E + LH+ + + LG Sbjct: 7 SARQAKAKDGEQQQQLCASCLACPACLQLLAEPVSLPCGHTFCRVCLVKELRRKPKECPSCHATCHTRQVAEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYSVPVFPGQTLCVHFFEPRYKLMMQRIINTSRRFAYVLPAPVPS-TNDDDRNTDQQGRIALEAHVCEAEFLSDDRVMVKIKLAGRHTVVEDFVEAGTGNLHYCQLEPFDDDPLQEGGAGELTDLHTRAKTICNGFLG 256
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A6U2J5U5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2J5U5_HEMAN) HSP 1 Score: 175 bits (444), Expect = 1.830e-48 Identity = 82/205 (40.00%), Postives = 131/205 (63.90%), Query Frame = 3 Query: 219 VPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEES 833 + +SMLEC VC+ L+CEP+T CGH+FCR C V +++++KKCPSCRA+ ++ + + ++++ + +P +QR+LE Q E+ PIF+YN +FP L L++FEPRYK+M+ RI+ +SR+F Y+P + +Q GD+ + A++ +FL DGR LQA+ R I + +E T GL +C+V+ +ND ES Sbjct: 9 IEVSMLECSVCLQLLCEPVTTPCGHSFCRPCLVGTLRKNKKKCPSCRAICQIEPETHSETIALSSVAKAVFPKAYQQRILEVQAEKASWDTILPIFFYNDTLFPFSPLALNLFEPRYKVMLHRIVESSRRFAYLPKFDTYQANVGDMGVIAEITDIEFLADGRAHLQAKCRDRFTIKEAWIEDGTQGLHWCKVDLVNDGVSASES 213
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: D8LDP9_ECTSI (Kinase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP9_ECTSI) HSP 1 Score: 161 bits (407), Expect = 1.150e-44 Identity = 70/144 (48.61%), Postives = 106/144 (73.61%), Query Frame = 3 Query: 177 AKRPRSKKACHSTSVPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRK 608 +K P+ +A + ++P++ LEC VC+ LVCEP++L CGH+FCR+C V ++R++KKCP+CRAV + A+ Q ++VM+ANI + C+P RL E + ER + P+FYYN+PMFPG+ L LH+FEPRYK+M+ R++ TSR+ Sbjct: 18 SKTPQGGRAGGTATLPLAALECAVCLFLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNSAEDQPEDVMLANIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRR 161 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10359.2.8 >prot_C-tenellus_contig10359.2.8 ID=prot_C-tenellus_contig10359.2.8|Name=mRNA_C-tenellus_contig10359.2.8|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=275bp MLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCAback to top mRNA from alignment at C-tenellus_contig10359:1894..5594+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10359.2.8 ID=mRNA_C-tenellus_contig10359.2.8|Name=mRNA_C-tenellus_contig10359.2.8|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3701bp|location=Sequence derived from alignment at C-tenellus_contig10359:1894..5594+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10359:1894..5594+ >mRNA_C-tenellus_contig10359.2.8 ID=mRNA_C-tenellus_contig10359.2.8|Name=mRNA_C-tenellus_contig10359.2.8|organism=Choristocarpus tenellus KU2346|type=CDS|length=825bp|location=Sequence derived from alignment at C-tenellus_contig10359:1894..5594+ (Choristocarpus tenellus KU2346)back to top |