mRNA_C-tenellus_contig1035.1.1 (mRNA) Choristocarpus tenellus KU2346
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: D7FH68_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH68_ECTSI) HSP 1 Score: 184 bits (466), Expect = 1.500e-54 Identity = 90/153 (58.82%), Postives = 118/153 (77.12%), Query Frame = 1 Query: 1 ILFVQVGYAAFGKWGARLSTFVMLVLTVFVLIAYMVLAKDIWSGLVAYALEMELDERESNQIGYRSVEKNNQEPQARAEIKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQTK 459
I +V+VG AAFG+ GA ++T V++ +T+FV IAYMVL +DIWSG+V + LD +SN IGYRSVE N ++P A+ +KL AD+WGD+MEAFPI L++ CHFN+LSV S VNPTRERLKGLLHGT+G+ S LY+V+ + GY+YAY TK
Sbjct: 12 ITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNHIGYRSVEANQEDPTAKLGLKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEGTK 164
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A835YKB4_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB4_9STRA) HSP 1 Score: 122 bits (306), Expect = 4.690e-30 Identity = 74/196 (37.76%), Postives = 100/196 (51.02%), Query Frame = 1 Query: 13 QVGYAAFGKWGARLSTFVMLVLTVFVLIAYMVLAKDIWSGL----VAYALEMELDE-----RESN--------------------------------------QIGYRSVEKNNQEPQARAEIKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQTK 459
V AFG G +T ++L +T+FVL+AYM+L +DIWSGL V + E E E ESN IGYR E N + P+AR + N ++ AFPI+SLA++C FN+LSV + LVNPTRERLKG++H ++G +YL +G GY YAYG T+
Sbjct: 48 SVAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQ 243
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A7S2UXQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXQ2_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.830e-21 Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1 Query: 184 IGYRSVEKNNQEPQARAEIKL-VADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQTK 459
I YRS+ N + P A L V ++GDV+ + PI+SL +LCHFNMLSV SQLVNPTR+R+K ++H + +++ +YL+MG+ GY YAY TK
Sbjct: 85 ICYRSLSFNAENPMEFAARSLAVTTDFGDVLYSLPIMSLVFLCHFNMLSVHSQLVNPTRQRVKSMIHSAMSLSTLIYLLMGLLGYFYAYENTK 177
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A6H5J7N9_9PHAE (Aa_trans domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N9_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.040e-14 Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 1 Query: 76 LTVFVLIAYMVLAKDIWSGLVAYALEMELDERESNQ--------------------------------------IGYRSVEKNNQEPQARAEIKLVADNWGDVMEAFPILSLAYLC 309
+T+FV IAYMVL +DIWSG+V + LD +SN IGYRSVE N ++P A+ E+KL AD+WGD+MEAFPI L++ C
Sbjct: 3 MTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNYVLFVALLLVFPACLAKDLHALRHFCYVGFFSALVLTAAIGYRSVEANQEDPTAKLELKLNADSWGDIMEAFPIFCLSFQC 118
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A8K1C5D8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5D8_PYTOL) HSP 1 Score: 80.1 bits (196), Expect = 1.250e-14 Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 238 IKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQT 456
IKL DNW D + AFPI+S+++LCHFN+L V +L PTR RLK ++ T+ F Y+V+G +GY +AY Q
Sbjct: 226 IKLFPDNWKDPVYAFPIISVSFLCHFNVLPVYRELKKPTRRRLKNIVTCTMASTWFFYMVVGFTGYFFAYRQV 298
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A2D4CAQ0_PYTIN (Aa_trans domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAQ0_PYTIN) HSP 1 Score: 78.2 bits (191), Expect = 6.000e-14 Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1 Query: 238 IKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAY 447
IK DNW D + AFPI+S+++LCHFN+L V +L PTR RLKG++ T+ F Y+V+G +GY +AY
Sbjct: 243 IKWFPDNWKDPLYAFPIISVSFLCHFNVLPVYRELQKPTRRRLKGIVSCTMFSTWFFYMVVGFTGYFFAY 312
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A7S1Z8F4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8F4_TRICV) HSP 1 Score: 72.8 bits (177), Expect = 1.400e-13 Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 1 Query: 265 DVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQTK 459
D++ AFPI++L++ +N+LSV S LVNPTR R+K +L GT+ + L+ V+GM GY+YAY +TK
Sbjct: 50 DMVFAFPIIALSFFSIYNVLSVHSALVNPTRSRVKFVLDGTIFLCFVLFFVVGMGGYLYAYDETK 114
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A3M6V9A6_9STRA (Aa_trans domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9A6_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.080e-13 Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 238 IKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQT 456
IKL D+W D AFPI+S+++LCHFN+L V +L PTR RLK ++ T+ A Y+++G GY++A+ Q+
Sbjct: 227 IKLTPDSWVDAAYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKIVASTISFAWLFYMIVGTMGYLFAFQQS 299
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A2P4Y657_9STRA (Sodium-coupled neutral amino acid transporter n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y657_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.080e-13 Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1 Query: 193 RSVEKNNQEPQARAEIKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQ 453
R +++ EPQ IKLV D+W D AFPI+S+++LCHFN+L V +L PTR RLK ++ T+ Y+++G+ GY++A+ Q
Sbjct: 214 RDIQEIEAEPQI--PIKLVPDSWADAAYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKIVASTMFSTWLFYMLVGIMGYLFAFRQ 298
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A6A3ZBD5_9STRA (Aa_trans domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZBD5_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 3.880e-13 Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 217 EPQARAEIKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQ 453
E + + IKLV D+W D AFPI+S+++LCHFN++ V +L PTR RLK ++ T+ Y+++G+ GY++AY Q
Sbjct: 220 EAEPQIPIKLVPDSWADAAYAFPIISVSFLCHFNVMPVYRELHKPTRHRLKKIVASTMFSTWLFYVLVGIMGYLFAYRQ 298 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig1035.1.1 >prot_C-tenellus_contig1035.1.1 ID=prot_C-tenellus_contig1035.1.1|Name=mRNA_C-tenellus_contig1035.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=155bp ILFVQVGYAAFGKWGARLSTFVMLVLTVFVLIAYMVLAKDIWSGLVAYALback to top mRNA from alignment at C-tenellus_contig1035:7026..15203+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig1035.1.1 ID=mRNA_C-tenellus_contig1035.1.1|Name=mRNA_C-tenellus_contig1035.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=8178bp|location=Sequence derived from alignment at C-tenellus_contig1035:7026..15203+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig1035:7026..15203+ >mRNA_C-tenellus_contig1035.1.1 ID=mRNA_C-tenellus_contig1035.1.1|Name=mRNA_C-tenellus_contig1035.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=465bp|location=Sequence derived from alignment at C-tenellus_contig1035:7026..15203+ (Choristocarpus tenellus KU2346)back to top |