mRNA_C-tenellus_contig10348.1.1 (mRNA) Choristocarpus tenellus KU2346
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Match: A0A3M0VVI6_9EURO (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 134920 TaxID=2249417 RepID=A0A3M0VVI6_9EURO) HSP 1 Score: 76.6 bits (187), Expect = 8.800e-16 Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 1 Query: 1 RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDVKQAF 165 +YKAR VAKGF+QI GLD+ + FA T++P + +++LA+AA KDWE++ WD+K AF Sbjct: 120 KYKARWVAKGFQQIPGLDFNEVFASTVNPVTYRIILAIAASKDWEIQQWDIKNAF 174
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Match: A0A2Z7CJD2_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CJD2_9LAMI) HSP 1 Score: 70.5 bits (171), Expect = 1.800e-14 Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1 Query: 1 RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDVKQAFI 168 RYKARLVAKGF Q EG+DY + FAP + +++++LAL A+ DWELK DVK AF+ Sbjct: 42 RYKARLVAKGFTQREGVDYTEIFAPVVKFTTVRIMLALCAQFDWELKQMDVKTAFL 97
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 73.6 bits (179), Expect = 6.940e-14 Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1 Query: 1 RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDVKQAFI 168 +YKARLVA+GF Q+EG+DY +TFAP S++++LALAA DWE+ DVK AF+ Sbjct: 1057 KYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFL 1112
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Match: A0A443QDV8_9ACAR (Retrovirus-related pol polyprotein from transposon tnt 1-94-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443QDV8_9ACAR) HSP 1 Score: 70.5 bits (171), Expect = 7.150e-14 Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1 Query: 1 RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDVKQAFI 168 R+KARLVAKGF Q G+DY +TF+P + S++++LALAA KD E+ H+DVK AF+ Sbjct: 44 RFKARLVAKGFTQKPGVDYNETFSPVVKMNSIRVILALAASKDMEITHFDVKTAFL 99
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Match: UPI00178C24D3 (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00178C24D3) HSP 1 Score: 69.7 bits (169), Expect = 7.700e-14 Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1 Query: 1 RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDVKQAFI 168 RYKARLVAKGF Q EG+DY + FAP + +++M+LAL A DWE+K DV AF+ Sbjct: 19 RYKARLVAKGFTQKEGVDYAEIFAPVVKFTTIRMMLALVAHNDWEMKQMDVTTAFL 74
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Match: A0A0C9YQB0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9YQB0_9AGAM) HSP 1 Score: 69.7 bits (169), Expect = 1.030e-13 Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 1 Query: 1 RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDVKQAFI 168 R+KARLVA+GF QI G+D+ T+AP AS+K+++ALAA+ DWEL +D K+AF+ Sbjct: 45 RFKARLVAQGFSQIPGVDFHQTYAPVARQASVKLLIALAAQNDWELDCFDAKRAFL 100
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Match: A0A2I0A9V7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0A9V7_9ASPA) HSP 1 Score: 68.9 bits (167), Expect = 1.280e-13 Identity = 29/56 (51.79%), Postives = 44/56 (78.57%), Query Frame = 1 Query: 1 RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDVKQAFI 168 RYKARLVAKG+ Q G+DYQDTFAP ++++++++AA +DW L+ +D+K AF+ Sbjct: 22 RYKARLVAKGYTQRYGVDYQDTFAPVAKINTIRILISIAANRDWPLQQFDIKNAFL 77
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Match: A0A2N9IXX5_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IXX5_FAGSY) HSP 1 Score: 72.8 bits (177), Expect = 1.290e-13 Identity = 29/56 (51.79%), Postives = 46/56 (82.14%), Query Frame = 1 Query: 1 RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDVKQAFI 168 RYKARLVAKG+ Q +G+DY +TF+P + PA+++++L++AA+++W LK DV AF+ Sbjct: 436 RYKARLVAKGYHQQQGMDYDETFSPVVKPATVRLILSIAAQQNWSLKQLDVSNAFL 491
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Match: A0A2N9HXK0_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HXK0_FAGSY) HSP 1 Score: 72.8 bits (177), Expect = 1.300e-13 Identity = 29/56 (51.79%), Postives = 46/56 (82.14%), Query Frame = 1 Query: 1 RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDVKQAFI 168 RYKARLVAKG+ Q +G+DY +TF+P + PA+++++L++AA+++W LK DV AF+ Sbjct: 830 RYKARLVAKGYHQQQGMDYDETFSPVVKPATVRLILSIAAQQNWSLKQLDVSNAFL 885
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Match: A0A2N9IEP2_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IEP2_FAGSY) HSP 1 Score: 72.8 bits (177), Expect = 1.300e-13 Identity = 29/56 (51.79%), Postives = 46/56 (82.14%), Query Frame = 1 Query: 1 RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDVKQAFI 168 RYKARLVAKG+ Q +G+DY +TF+P + PA+++++L++AA+++W LK DV AF+ Sbjct: 885 RYKARLVAKGYHQQQGMDYDETFSPVVKPATVRLILSIAAQQNWSLKQLDVSNAFL 940 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10348.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10348.1.1 >prot_C-tenellus_contig10348.1.1 ID=prot_C-tenellus_contig10348.1.1|Name=mRNA_C-tenellus_contig10348.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=56bp RYKARLVAKGFRQIEGLDYQDTFAPTLSPASLKMVLALAAEKDWELKHWDback to top mRNA from alignment at C-tenellus_contig10348:4227..4394- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10348.1.1 ID=mRNA_C-tenellus_contig10348.1.1|Name=mRNA_C-tenellus_contig10348.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=168bp|location=Sequence derived from alignment at C-tenellus_contig10348:4227..4394- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10348:4227..4394- >mRNA_C-tenellus_contig10348.1.1 ID=mRNA_C-tenellus_contig10348.1.1|Name=mRNA_C-tenellus_contig10348.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=168bp|location=Sequence derived from alignment at C-tenellus_contig10348:4227..4394- (Choristocarpus tenellus KU2346)back to top |