mRNA_C-tenellus_contig10340.2.1 (mRNA) Choristocarpus tenellus KU2346
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-tenellus_contig10340.2.1 vs. uniprot
Match: A0A6H5KMS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS2_9PHAE) HSP 1 Score: 198 bits (504), Expect = 6.170e-56 Identity = 92/148 (62.16%), Postives = 115/148 (77.70%), Query Frame = 3 Query: 453 IGTLYSSRGEVIRELNSNEYLEVMRDWAPVASFAASQADDEKIKASATSILESLRGMAQWQPKKKGDYRKPGSKFAFGVPFVAVKNDIIDALACLQVSEEEGVVIEWICQNPFTLGVEGNAVEWLTKGIVTLCSKRLEMPVTVAPAAR 896
IGTL+ S E+IREL+S EY ++RDWAP+ASFA+ +A D K+K A IL LRGMA+WQPK+ DY K GSK++FG P A+K +DALACLQVSE++GVV+EWIC NP TLG+ GNAVEWL KGI LC KRL++PVT++P AR
Sbjct: 150 IGTLFESEDELIRELSSEEYTNLLRDWAPIASFASVEAIDTKVKEEAACILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKAR 297
BLAST of mRNA_C-tenellus_contig10340.2.1 vs. uniprot
Match: D7FI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI60_ECTSI) HSP 1 Score: 135 bits (341), Expect = 1.030e-34 Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 3 Query: 621 MAQWQPKKKGDYRKPGSKFAFGVPFVAVKNDIIDALACLQVSEEEGVVIEWICQNPFTLGVEGNAVEWLTKGIVTLCSKRLEMPVTVAPAAR 896
MA+WQPK+ DY K GSK++FG P A+K +DALACL+VSE++GVV+EWIC NP TLG+ GNAVEWL KGI LC KRL++PVT++P AR
Sbjct: 1 MAEWQPKRNSDYTKVGSKWSFGAPIGAIKGGQVDALACLEVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKAR 92
BLAST of mRNA_C-tenellus_contig10340.2.1 vs. uniprot
Match: A0A0G4F895_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F895_VITBC) HSP 1 Score: 126 bits (317), Expect = 4.510e-30 Identity = 61/150 (40.67%), Postives = 97/150 (64.67%), Query Frame = 3 Query: 453 IGTLYSSRGEVIRELNSNEYLEVMRDWAPVASFAASQAD-DEKIKASATSILESLRGMAQWQPKKKGDYRKPGSKFAFGVPFVAVKNDIIDALACLQVSEEEGVVIEWICQNPFTLGVEGNAVEWLTKGIVTLCSKRLEMPVTVAPAARL 899
+GTL+ S E IREL S+E+L+ MR WAP+++F ++ + + + +AT ++ L+ MA+W+P + G Y + FG P A K +DA+ACL++SE +GVV+ +I NP +GVEGNA +WL KG+ +C +RL M + + P R+
Sbjct: 69 LGTLFKSEDEEIRELGSDEFLDTMRLWAPMSNFVVNEGNASSREEGNATRLV--LQQMAEWKPPRSGSYLGKTPDWRFGAPVGAFKGGQLDAVACLEISESDGVVVRYIVLNPLNIGVEGNAADWLIKGMAFICRERLGMRLDIYPLMRV 216
BLAST of mRNA_C-tenellus_contig10340.2.1 vs. uniprot
Match: A0A835Z8Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z3_9STRA) HSP 1 Score: 108 bits (269), Expect = 7.580e-25 Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = 3 Query: 621 MAQWQPKKKGDYRKPGSKFAFGVPFVAVKNDIIDALACLQVSEEEGVVIEWICQNPFTLGVEGNAVEWLTKGIVTLCSKRLEMPVTVAPAAR 896
M +W P +KGD+R+ GS +AF P A K +DA+ACL+V+EE+G+ I W+C+NP LGV GN++ WL KGI TL KRL+M V P AR
Sbjct: 1 MQKWAPARKGDFRQEGSGWAFAAPVAAFKAGNLDAVACLEVTEEDGITIAWLCENPSYLGVPGNSIAWLVKGIETLVGKRLDMAVQELPTAR 92 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10340.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10340.2.1 >prot_C-tenellus_contig10340.2.1 ID=prot_C-tenellus_contig10340.2.1|Name=mRNA_C-tenellus_contig10340.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=236bp MRPAIWIWVAWLSLYKTCTAFNTLLPRPRTPLRCRMTATSPKSTSGSGFGback to top mRNA from alignment at C-tenellus_contig10340:1949..3633+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10340.2.1 ID=mRNA_C-tenellus_contig10340.2.1|Name=mRNA_C-tenellus_contig10340.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1685bp|location=Sequence derived from alignment at C-tenellus_contig10340:1949..3633+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10340:1949..3633+ >mRNA_C-tenellus_contig10340.2.1 ID=mRNA_C-tenellus_contig10340.2.1|Name=mRNA_C-tenellus_contig10340.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=708bp|location=Sequence derived from alignment at C-tenellus_contig10340:1949..3633+ (Choristocarpus tenellus KU2346)back to top |