mRNA_C-tenellus_contig1033.3.2 (mRNA) Choristocarpus tenellus KU2346
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Match: D8LST7_ECTSI (Putative type II topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST7_ECTSI) HSP 1 Score: 198 bits (504), Expect = 1.180e-54 Identity = 101/208 (48.56%), Postives = 127/208 (61.06%), Query Frame = 3 Query: 246 DGEGNVCP-----EIHPAALHPGKSLRRCDGFDIMRKGSRNKDKRLVMLPGTLGLANG---GKLGTLKDITAACPTLYFEFPEGRLKCTGRTVHARGRFFTLYADKTGAKASRMDCRDVFDAVTFFTKVAWVGSLEDNPEENPLPLPISLQALPQEN--------------------PLTGKEAFEIHFGAGNPSKVDGDQVKGKGKA 785 DG N + HPAA+ P +LR+CDG ++++ +R + ++L++LPG LGL NG GKLGTL + T A P LY EFPEGRLKCTGRTVHA+GRFFTLYADK +A+RMDCRDVFD+ FF+K WVG EDNP E PLPLP SLQ+L E+ P F+ HFG GNP+ + + K A Sbjct: 50 DGNNNAASTAEPSKYHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNATPANPVLYMEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQASGGGXXXXXXXXXGDAAPKLTAADFKTHFGGGNPASLMSGDSESKASA 257
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Match: A0A6H5JPN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN3_9PHAE) HSP 1 Score: 192 bits (488), Expect = 2.800e-52 Identity = 97/193 (50.26%), Postives = 123/193 (63.73%), Query Frame = 3 Query: 276 HPAALHPGKSLRRCDGFDIMRKGSRNKDKRLVMLPGTLGLANG---GKLGTLKDITAACPTLYFEFPEGRLKCTGRTVHARGRFFTLYADKTGAKASRMDCRDVFDAVTFFTKVAWVGSLEDNPEENPLPLPISLQALPQEN---PLTGKEA-----------------FEIHFGAGNPSKVDGDQVKGKGKA 785 HPAA+ P +LR+CDG ++++ +R + ++L++LPG LGL NG GKLGTL + A P LY EFPEGRLKCTGR VHA+GRFFTLYADK +A+RMDCRDVFD+ FF+K WVG EDNP E PLPLP SLQ L E+ P +G + F+ HFG GNP+ + + K A Sbjct: 76 HPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGVLGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRMVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQTLRGEDEQAPGSGGDDGDATGGGDAAQKLTAADFKTHFGGGNPASLMSGDSESKASA 268
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Match: W4FT72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FT72_9STRA) HSP 1 Score: 107 bits (268), Expect = 6.510e-23 Identity = 62/158 (39.24%), Postives = 83/158 (52.53%), Query Frame = 3 Query: 285 ALHPGKSLRRCDGFDIMRKGSRNKDKRLVMLPGTLG-LANGGKLGTLKDITAACPTLYFEFPEGRLKCTGRTVHARGRFFTLYADKTGAKASRMDCRDVFDAVTFFTKVAWVGSLEDNPEENPLPLPISLQALPQENPLTGKEAFEIHFGAGNPSKVD 755 A+ ++LR C G DI +K K K L PG + + GG LGTL + P LY +FP+GRLK G V+A+ RF TL + G C DVFDAV F +V+W+G ++ NP E PLP+P L A P FGAG+ + V+ Sbjct: 26 AIPLARALRACHGQDIKKKSGHRKGKFLFAFPGLVSPMPEGGTLGTLDKLDTDKPVLYIDFPQGRLKMQGTLVYAQNRFLTLQCARRGKSVV---CDDVFDAVVTFPEVSWIGPVDANPSEAPLPIPSFLHAYTNIPP-------SYTFGAGDYNAVE 173
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Match: A0A6A4ZWI6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZWI6_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.580e-22 Identity = 61/151 (40.40%), Postives = 79/151 (52.32%), Query Frame = 3 Query: 306 LRRCDGFDIMRKGSRNKDKRLVMLPGTLG-LANGGKLGTLKDITAACPTLYFEFPEGRLKCTGRTVHARGRFFTLYADKTGAKASRMDCRDVFDAVTFFTKVAWVGSLEDNPEENPLPLPISLQALPQENPLTGKEAFEIHFGAGNPSKVD 755 LR C G DI +K K K L PG + + GG LGTL + P LY +FP+GRLK G V+A+ RF TL + G C DVFDAV F +V+W+G ++ NP E PLP+P L A P FGAG+ + V+ Sbjct: 1 LRACHGQDIKKKSGHRKGKFLFAFPGLVSPMPEGGTLGTLDKLDTDKPVLYIDFPQGRLKMQGTLVYAQNRFLTLQCARRGKSVV---CDDVFDAVVTFPEVSWIGPVDANPSEAPLPIPSFLHAYTNIPP-------SYTFGAGDYNAVE 141
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Match: A0A0D2X1W4_CAPO3 (Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X1W4_CAPO3) HSP 1 Score: 108 bits (269), Expect = 1.150e-21 Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = 3 Query: 306 LRRCDGFDIMRKGSRNKDKRLVMLPGTL-GLANGGK--LGTLKDITAACPTLYFEFPEGRLKCTGRTVHARGRFFTLYADKTGAKASRMDCRDVFDAVTFFTKVAWVGSLEDNPEENPLPLPISLQAL 680 LR C G DI+RKG K++ L+ PG L GL + G +G+L + + P +Y +FPEGRLK G V +F L A K + C DVFD V F++ W+G L+DNP E+PLPLP SL L Sbjct: 417 LRDCHGADIVRKGGARKERYLISFPGQLQGLTSSGTPTIGSLAKLNSPNPVMYLDFPEGRLKLFGTLVFTNSKFVALQAKKQA-----IQCEDVFDKVVTFSEATWIGHLQDNPNEDPLPLPASLIGL 539
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Match: A0A1Y1I0T0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I0T0_KLENI) HSP 1 Score: 105 bits (263), Expect = 1.440e-21 Identity = 86/262 (32.82%), Postives = 123/262 (46.95%), Query Frame = 3 Query: 207 DDASESNLALKIVDGEGNVCPEIHPA-ALHPGKSLRRCDGFDIMRKGSRNKDKRLVMLPGTLGLANGGKLGTLKDITAACPTLYFEFPEGRLKCTGRTVHARGRFFTLYADKTGAKASRMDCRDVFDAVTFFTKVAWVGSLEDNPEENPLPLPISLQALPQENPLTGKEAFE-IHFGAGNPSKVDGD-QVKGKGKARLPALSMVDSKGGEGGTDGTGSGNMET-------DD--GEQLNRRSGRTKGRSRIVYAEKDEDELD 956 DD L + V + PA +L K++ RC+G DI+++G R K+K L PG L GG+LG L + P +YF FPEGRLK G V+ + ++ TL+ K A + C D F+ + F++ W+GS E+NP E L +P S LT + E + F G + D + + A PA D + EGGT G + + E DD G R+S RT GRS + +DELD Sbjct: 21 DDVESKRLRDRAVSKGSLARAKASPADSLSASKAILRCNGKDIVKRGHR-KNKYLFSFPGLLAPVAGGQLGELAQLDTKNPVMYFSFPEGRLKLFGTLVYPKNKYLTLHFSKG---AGNIACEDCFENMVVFSEYWWIGSKEENPNEERLDMPES---------LTKRSLHEGVDFSGGAARQPDTTAKAHPEATASKPAEPDPDDQEEEGGTAGPDALDSEAEIARTAQDDQKGAAARRKSSRTAGRSFRFAEPRTDDELD 269
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Match: A0A176W2G0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W2G0_MARPO) HSP 1 Score: 102 bits (255), Expect = 1.420e-20 Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 3 Query: 279 PAALHPGKSLRRCDGFDIMRKGSRNKDKRLVMLPGTLGLANGGKLGTLKDITAACPTLYFEFPEGRLKCTGRTVHARGRFFTLYADKTGAKASRMD--CRDVFDAVTFFTKVAWVGSLEDNPEENPLPLPISLQALPQENPLTGKEAFEIHFGAGNPSKVDGDQV 767 PA L P K++R+C+G DI++KG+R K K L PG + +GGK G L + + P LY +FP GRLK G V+ + ++ T++ R D C D F+++ F + W+G+ E+NPEE LP P LQ + + F+ + GAG + ++V Sbjct: 43 PAPLVPTKTIRKCNGKDIVKKGNR-KTKYLFAFPGLVAPVSGGKFGDLTHLDSRNPILYVDFPHGRLKLFGTIVYPKNKYLTMHF-----VPGRGDIVCEDYFESLVVFPESWWIGTKEENPEELRLPFPSDLQQVKHAD-------FDFNAGAGRVDETSTNRV 194
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Match: D8RIE0_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RIE0_SELML) HSP 1 Score: 99.8 bits (247), Expect = 4.880e-20 Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 279 PAALHPGKSLRRCDGFDIMRKGSRNKDKRLVMLPGTLGLANGGKLGTLKDITAACPTLYFEFPEGRLKCTGRTVHARGRFFTLYADKTGAKASRMDCRDVFDAVTFFTKVAWVGSLEDNPEENPLPLPISLQALPQENPLTGKEAFEIHFGAGNPSKV 752 P L P K L +CDG DI++KG+R K K L PG + GGK G L + P LY +FP+GR+K G V+ + ++ TL K G+K+ + C DV +++ F++ W+G+ E+NPEE L +P L N + GAG+ SK Sbjct: 39 PQLLLPSKELLKCDGKDIVKKGTR-KSKFLFSFPGLVAPVAGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTK-GSKS--VICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDLCEEKHTN-------YSFTAGAGSDSKT 185
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Match: D8REU9_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8REU9_SELML) HSP 1 Score: 99.8 bits (247), Expect = 5.900e-20 Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 279 PAALHPGKSLRRCDGFDIMRKGSRNKDKRLVMLPGTLGLANGGKLGTLKDITAACPTLYFEFPEGRLKCTGRTVHARGRFFTLYADKTGAKASRMDCRDVFDAVTFFTKVAWVGSLEDNPEENPLPLPISLQALPQENPLTGKEAFEIHFGAGNPSKV 752 P L P K L +CDG DI++KG+R K K L PG + GGK G L + P LY +FP+GR+K G V+ + ++ TL K G+K+ + C DV +++ F++ W+G+ E+NPEE L +P L N + GAG+ SK Sbjct: 39 PQLLLPSKELLKCDGKDIVKKGTR-KSKFLFSFPGLVAPVAGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTK-GSKS--VICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDLCEEKHTN-------YSFTAGAGSDSKT 185
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Match: W7TM28_9STRA (Dna-binding protein rhl1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM28_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 5.740e-19 Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 3 Query: 300 KSLRRCDGFDIMRKGSRNKDKRLVMLPGTLGLAN-GGKLGTLKDITAACPTLYFEFPEGRLKCTGRTVHARGRFFTLYADKTGAKASRMDCRDVFDAVTFFTKVAWVGSLEDNPEENPLPLP 662 K LRR DG DI+RKG++ K + + +LP + + GGKLGT+ + P LY +FP+GR+KC GR V R L + K S + C+D+ + + F+KV W+G+ ++NPEE P P P Sbjct: 52 KDLRRWDGCDIVRKGAK-KTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE---GKRS-VTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFP 168 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1033.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig1033.3.2 >prot_C-tenellus_contig1033.3.2 ID=prot_C-tenellus_contig1033.3.2|Name=mRNA_C-tenellus_contig1033.3.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=388bp MIERDVESFLFSETEGPPGKRNKVDTKNVSDPKKIPYGREDDASESNLALback to top mRNA from alignment at C-tenellus_contig1033:2653..4492+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig1033.3.2 ID=mRNA_C-tenellus_contig1033.3.2|Name=mRNA_C-tenellus_contig1033.3.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1840bp|location=Sequence derived from alignment at C-tenellus_contig1033:2653..4492+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig1033:2653..4492+ >mRNA_C-tenellus_contig1033.3.2 ID=mRNA_C-tenellus_contig1033.3.2|Name=mRNA_C-tenellus_contig1033.3.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1164bp|location=Sequence derived from alignment at C-tenellus_contig1033:2653..4492+ (Choristocarpus tenellus KU2346)back to top |