mRNA_C-tenellus_contig10322.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10322.5.1
Unique NamemRNA_C-tenellus_contig10322.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Match: D7G1Y4_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.900e-26
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 ALLEIFLAMNPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERGRKSGRSDDTA 204
            ALLE FL ++PGK+VLLDGFPRSLDNARDW RLFGPPEA IR++ PDE M  RIVERG+ SGR+DD A
Sbjct:  314 ALLEKFLTLHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGSGRADDHA 381
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BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Match: B8CC71_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC71_THAPS)

HSP 1 Score: 66.2 bits (160), Expect = 7.940e-12
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 ALLEIFLAMNPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERGRKSGRSDD 198
            AL++  +  +PGK +LLDGFPRS +NARD   L G PE  + LD  D  +++RI+ RG+   R+DD
Sbjct:   65 ALMQKRMKDHPGKRILLDGFPRSAENARDLVTLCGKPELALHLDCDDTILIERILHRGKSGARADD 130
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BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Match: K0SSZ9_THAOC (EF-hand domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SSZ9_THAOC)

HSP 1 Score: 68.2 bits (165), Expect = 9.380e-12
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 ALLEIFLAMNPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERGRKS 183
            AL+   +   PG+ +LLDGFPRSL+NARD+  L GPPE  + LD  D  +L+RI++RG +S
Sbjct:  343 ALMRRRMRAYPGRRILLDGFPRSLENARDFVELCGPPELALHLDCDDTVLLERILDRGERS 403
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BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Match: A0A836C7H6_9CHLO (UMP-CMP kinase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C7H6_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 9.560e-12
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 ALLEIFLAMNPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERGRKSGRSDDTAE 207
            ALL+  +  + GK+ L+DGFPR++D A  + +   P EA +  D P+EEM KR+++RG  SGRSDD AE
Sbjct:   98 ALLKRAMIASGGKFFLIDGFPRAMDQAEAFEKAIKPCEAVLFFDCPEEEMEKRLLKRGETSGRSDDNAE 166
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BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Match: A0A7S4MMY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MMY0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.400e-11
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   28 NPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERGRKSGRSDD 198
            +PGK +LLDGFPRS +NARD   L G PE  + LD  D  +L+RI+ RGR   R+DD
Sbjct:  446 HPGKRILLDGFPRSAENARDLVTLCGQPELALHLDCDDTVLLERIISRGRTGARADD 502
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BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Match: B8C8Q3_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8Q3_THAPS)

HSP 1 Score: 64.3 bits (155), Expect = 2.610e-11
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 ALLEIFLAMNPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERGRKSGRSDD 198
            AL+   +  +PG+ +LLDGFPRSL+NARD+  L GPPE  + LD  D  +L+RI+   R S R+DD
Sbjct:   65 ALMRRRMRQHPGRRILLDGFPRSLENARDFVELCGPPELALHLDCDDCVLLERIL--ARVSVRADD 128
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BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Match: A0A8J4ANS8_9CHLO (Adenylate kinase n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ANS8_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-11
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    4 LLEIFLAMNPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERGRKSGRSDDTAE 207
            LL+  +  + GK+ L+DGFPR+LD A  + R   P +A +  D P+EEM KR+++RG  SGRSDD A+
Sbjct:   82 LLKKAMIESGGKFFLIDGFPRALDQAEQFERSIMPCKAVLFFDCPEEEMEKRLLKRGETSGRSDDNAD 149
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BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Match: K0RVU7_THAOC (EF-hand domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RVU7_THAOC)

HSP 1 Score: 66.6 bits (161), Expect = 3.250e-11
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 ALLEIFLAMNPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERGRKS 183
            AL+   +   PG+ +LLDGFPRS++NARD+  L GPPE  + LD  D  +L+RI++RG +S
Sbjct:  285 ALMRRRMRAYPGQRILLDGFPRSIENARDFVELCGPPELALHLDCDDTVLLERILDRGEQS 345
[Close]
BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Match: A0A8J4APK7_9CHLO (Adenylate kinase (Fragment) n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4APK7_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 3.670e-11
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    4 LLEIFLAMNPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERGRKSGRSDDTAE 207
            LL+  +  + GK+ L+DGFPR+LD A  + R   P +A +  D P+EEM KR+++RG  SGRSDD A+
Sbjct:  118 LLKKAMIESGGKFFLIDGFPRALDQAEQFERSIMPCKAVLFFDCPEEEMEKRLLKRGETSGRSDDNAD 185
[Close]
BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Match: A0A7S1CU37_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CU37_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.020e-11
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    1 ALLEIFLAMNPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERGRKSGRSDDTAE 207
            AL+   +   PG+ VLLDGFPRSL+NARD+  L GPPE  + LD  D  +L+RI+ RG  + R    AE
Sbjct:  268 ALMRRRMRSFPGRRVLLDGFPRSLENARDFVELCGPPELALHLDCEDTVLLERILARGGLTAREAKLAE 336
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10322.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y4_ECTSI4.900e-2675.00N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECT... [more]
B8CC71_THAPS7.940e-1246.97Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0SSZ9_THAOC9.380e-1250.82EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A836C7H6_9CHLO9.560e-1247.83UMP-CMP kinase n=1 Tax=Edaphochlamys debaryana Tax... [more]
A0A7S4MMY0_9STRA2.400e-1154.39Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
B8C8Q3_THAPS2.610e-1150.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A8J4ANS8_9CHLO3.000e-1147.06Adenylate kinase n=2 Tax=Volvox africanus TaxID=51... [more]
K0RVU7_THAOC3.250e-1149.18EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A8J4APK7_9CHLO3.670e-1147.06Adenylate kinase (Fragment) n=2 Tax=Volvox african... [more]
A0A7S1CU37_9STRA6.020e-1149.28Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10322contigC-tenellus_contig10322:4419..5090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G1Y4
PFAMsADK,EF-hand_1,EF-hand_5,EF-hand_7,EF-hand_8,PHD,SET
Model size207
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00003,RC00060,RC00181,RC00496
KEGG koko:K00939,ko:K02183,ko:K11423,ko:K13800
KEGG ReactionR00127,R00158,R00512,R01547,R01665,R03875,R03938,R04866,R04867,R11319,R11891,R11892
KEGG Pathwayko00230,ko00240,ko00310,ko00730,ko00983,ko01100,ko01110,ko01130,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map00230,map00240,map00310,map00730,map00983,map01100,map01110,map01130,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
KEGG ModuleM00049,M00052
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.27e-23
EggNOG OGsCOG0563@1|root,COG5126@1|root,KOG0027@2759|Eukaryota,KOG3079@2759|Eukaryota
EC2.1.1.43,2.7.4.14,2.7.4.3
Descriptioncytidylate kinase activity
Cds size183
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03036,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.0288572-UTR-C-tenellus_contig10322:4418..44421680789126.0288572-UTR-C-tenellus_contig10322:4418..4442Choristocarpus tenellus KU2346UTRC-tenellus_contig10322 4419..4442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.038592-CDS-C-tenellus_contig10322:4442..45431680789126.038592-CDS-C-tenellus_contig10322:4442..4543Choristocarpus tenellus KU2346CDSC-tenellus_contig10322 4443..4543 +
1680789126.0483248-CDS-C-tenellus_contig10322:5008..50901680789126.0483248-CDS-C-tenellus_contig10322:5008..5090Choristocarpus tenellus KU2346CDSC-tenellus_contig10322 5009..5090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10322.5.1prot_C-tenellus_contig10322.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10322 4443..5090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10322.5.1

>prot_C-tenellus_contig10322.5.1 ID=prot_C-tenellus_contig10322.5.1|Name=mRNA_C-tenellus_contig10322.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=61bp
MNPGKYVLLDGFPRSLDNARDWCRLFGPPEAYIRLDVPDEEMLKRIVERG
RKSGRSDDTAE
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mRNA from alignment at C-tenellus_contig10322:4419..5090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10322.5.1 ID=mRNA_C-tenellus_contig10322.5.1|Name=mRNA_C-tenellus_contig10322.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=672bp|location=Sequence derived from alignment at C-tenellus_contig10322:4419..5090+ (Choristocarpus tenellus KU2346)
GCATTGCTAGAGATATTCTTGGCGATGAACCCAGGGAAGTATGTTCTGCT
TGACGGCTTCCCCCGCTCCCTTGATAACGCCAGGGACTGGTGTAGGCTAT
TTGGACCGCCAGAAGCATATATCCGGTGATGATTATATAGTGGCAGTGAC
TGTTTTTGTGGGGGGGGTGGGGGTGGGGGGGGGCTAGGGGATGGAGGTTG
TGTGCTGTGGTATGGTGTGATACTAGGGGAGGGAGAAATTGAAAGGGTTT
GTGATTCAGGTTCTGTCAGAGGGGAGGATGGTAAGTAAGCAGAGGAGGGA
GGTTTCGTTCTAATTTTTTTTCTGATTTATGGCAGTAGTTATTTTCTTCC
TTGTGTACAGGAGTGGGACAGAATCCCCCTTGAGAATAGAATGGATTCAA
TTACCTTTTTATTTATGGTCTATACCGGCTGCAGTACATTTGATCGTCAT
TCCTTCCAATGACACACACACACACACATACATGTACACATATACATGTA
CACATATACATACACATGTACATATAGACACATAGACACATGCGCGCGCA
CACACACACAAACCAAATAGTTTTTTGCTTTTGATTTTAGGTTAGATGTG
CCGGATGAGGAGATGTTGAAGCGAATTGTTGAACGGGGAAGGAAGTCTGG
GAGGTCGGATGACACGGCGGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10322:4419..5090+

>mRNA_C-tenellus_contig10322.5.1 ID=mRNA_C-tenellus_contig10322.5.1|Name=mRNA_C-tenellus_contig10322.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=183bp|location=Sequence derived from alignment at C-tenellus_contig10322:4419..5090+ (Choristocarpus tenellus KU2346)
ATGAACCCAGGGAAGTATGTTCTGCTTGACGGCTTCCCCCGCTCCCTTGA
TAACGCCAGGGACTGGTGTAGGCTATTTGGACCGCCAGAAGCATATATCC
GGTTAGATGTGCCGGATGAGGAGATGTTGAAGCGAATTGTTGAACGGGGA
AGGAAGTCTGGGAGGTCGGATGACACGGCGGAA
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