mRNA_C-tenellus_contig10315.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10315.1.1
Unique NamemRNA_C-tenellus_contig10315.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Match: A0A7S4DEE4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEE4_HETAK)

HSP 1 Score: 133 bits (334), Expect = 7.020e-38
Identity = 63/82 (76.83%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    1 LAMGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKRDFDELADYLKKGLEVHFASAYQDVYDVAFS 246
            LA+  PVR DIAMTGELSLTGKVLPVGGIKEKTIAARR+G+ CLVFP+GN+RDF+EL  YL++GLE HFA+ Y DVY VAFS
Sbjct:   77 LALDKPVRSDIAMTGELSLTGKVLPVGGIKEKTIAARRSGIHCLVFPEGNRRDFEELPAYLREGLEAHFAATYADVYRVAFS 158
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BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Match: A0A7S2DII7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DII7_9STRA)

HSP 1 Score: 135 bits (339), Expect = 5.390e-37
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 LAMGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKRDFDELADYLKKGLEVHFASAYQDVYDVAF-SDPE 255
            LAM  P+R D+AMTGEL+LTGKVLPVGGIKEK +AARRAG++C+V P  NKRDFDELADYLK G+E+HFA  YQDVY VAF  DP+
Sbjct:  222 LAMDRPIRHDVAMTGELTLTGKVLPVGGIKEKVVAARRAGITCVVLPSANKRDFDELADYLKDGIEIHFAEKYQDVYAVAFCEDPD 307
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BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Match: A0A835YRA9_9STRA (Lon protease homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRA9_9STRA)

HSP 1 Score: 137 bits (345), Expect = 9.690e-36
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:    1 LAMGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKRDFDELADYLKKGLEVHFASAYQDVYDVAFS 246
            LA+  PVR D+AMTGE+SLTGKVLPVGGIKEKTIAARRAGV CLVFPKGN+RD+DEL DYLK GL+VHFA+ Y DVY VAF+
Sbjct:  803 LALARPVRADVAMTGEVSLTGKVLPVGGIKEKTIAARRAGVHCLVFPKGNRRDYDELPDYLKDGLDVHFAATYVDVYKVAFA 884
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BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Match: A0A7S2MXC7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MXC7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.880e-35
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:    1 LAMGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKRDFDELADYLKKGLEVHFASAYQDVYDVAF 243
            LA+  P+R D+AMTGE+SLTGKVLPVGGIKEKT+AARRAG+ C++FP  NKRD+DEL DYLK GLEVHFA  Y  VY+VAF
Sbjct:  182 LALDMPIRNDLAMTGEISLTGKVLPVGGIKEKTMAARRAGIKCVIFPNANKRDYDELPDYLKDGLEVHFADDYSKVYEVAF 262
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BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Match: A0A397DWP8_9STRA (Lon proteolytic domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DWP8_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.580e-35
Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 LAMGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKRDFDELADYLKKGLEVHFASAYQDVYDVA 240
            + +  PV+ D+AMTGELSLTGKVLPVGGIKEKTIAARR+GV+ LV P GN++DF+EL DYLK+GL+VHFAS Y DVY VA
Sbjct:    1 MGLSRPVKPDLAMTGELSLTGKVLPVGGIKEKTIAARRSGVTTLVLPFGNQKDFEELPDYLKQGLDVHFASVYDDVYKVA 80
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BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Match: D7FNJ6_ECTSI (Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ6_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 6.330e-35
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 LAMGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKRDFDELADYLKKGLEVHFASAYQDVYDVAF 243
            LA G+ VR+D+AMTGELSLTGKVLPVGGIKEKTIAARRAGV CLVFP+GNKRDF+EL +YL+ GLEVHFAS Y DV+ VAF
Sbjct:  981 LATGTSVREDLAMTGELSLTGKVLPVGGIKEKTIAARRAGVQCLVFPQGNKRDFEELPEYLRDGLEVHFASEYGDVFGVAF 1061
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BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Match: A0A7J6WP73_THATH (Lon protease n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WP73_THATH)

HSP 1 Score: 122 bits (307), Expect = 1.420e-34
Identity = 54/83 (65.06%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 LAMGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKRDFDELADYLKKGLEVHFASAYQDVYDVAFSD 249
            LAM  PVR+D+AMTGE++LTGK+LP+GG+KEKTIAARR+GV  ++FP  N+RDFDELA  +K+GL+VHF   Y  +YDVAFS+
Sbjct:   20 LAMRKPVRKDLAMTGEVTLTGKILPIGGVKEKTIAARRSGVKTIIFPAANRRDFDELASNVKEGLDVHFVDDYSQIYDVAFSE 102
[Close]
BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Match: A0A7S0B208_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B208_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.790e-34
Identity = 61/83 (73.49%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 LAMGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKRDFDELADYLKKGLEVHFASAYQDVYDVAFSD 249
            LA+  PVR D+AMTGE+SLTGKVLPVGGIKEKT+AARRAG+ C+VFP  NKRDFDEL DYLK+GL+V FAS Y DV+ VAF +
Sbjct:  211 LALDRPVRNDLAMTGEVSLTGKVLPVGGIKEKTMAARRAGIKCIVFPAENKRDFDELPDYLKEGLDVTFASDYADVFGVAFGN 293
[Close]
BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Match: A0A6F9DKG0_9ASCI (Lon protease homolog, mitochondrial n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DKG0_9ASCI)

HSP 1 Score: 133 bits (335), Expect = 2.190e-34
Identity = 58/85 (68.24%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    1 LAMGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKRDFDELADYLKKGLEVHFASAYQDVYDVAFSDPE 255
            LA+  PVRQD+AMTGE+SLTGKVLPVGGIKEKT+AA+RAGV+CL+FP+ N++DF++LADY+++G+EVHF S Y  V+D+AF  PE
Sbjct:  886 LALNRPVRQDVAMTGEVSLTGKVLPVGGIKEKTLAAKRAGVTCLIFPRENEKDFNDLADYIREGVEVHFVSEYAQVFDIAFQSPE 970
[Close]
BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Match: W4F9P1_9STRA (Lon proteolytic domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4F9P1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.840e-34
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 LAMGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKRDFDELADYLKKGLEVHFASAYQDVYDVA 240
            LA+  PV+ D+AMTGELSLTGKVLPVGGIKEKTIAARR+GV+ LV P GN++DF+EL DYLK+GL+VHFA+ Y DVY VA
Sbjct:  105 LALDKPVKSDLAMTGELSLTGKVLPVGGIKEKTIAARRSGVTTLVLPFGNQKDFEELPDYLKQGLDVHFATVYDDVYKVA 184
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10315.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DEE4_HETAK7.020e-3876.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DII7_9STRA5.390e-3773.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YRA9_9STRA9.690e-3679.27Lon protease homolog n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2MXC7_9STRA1.880e-3572.84Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A397DWP8_9STRA5.580e-3572.50Lon proteolytic domain-containing protein n=1 Tax=... [more]
D7FNJ6_ECTSI6.330e-3580.25Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7J6WP73_THATH1.420e-3465.06Lon protease n=1 Tax=Thalictrum thalictroides TaxI... [more]
A0A7S0B208_9STRA1.790e-3473.49Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6F9DKG0_9ASCI2.190e-3468.24Lon protease homolog, mitochondrial n=1 Tax=Phallu... [more]
W4F9P1_9STRA2.840e-3473.75Lon proteolytic domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10315contigC-tenellus_contig10315:2839..4246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNJ6
Preferred namePIM1
PFAMsAAA,LON_substr_bdg,Lon_C
Model size264
Max annot lvl2759|Eukaryota
KEGG koko:K08675
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000166,GO:0001018,GO:0001067,GO:0001666,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0004175,GO:0004176,GO:0004252,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006508,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009295,GO:0009314,GO:0009408,GO:0009507,GO:0009536,GO:0009628,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010044,GO:0010165,GO:0010212,GO:0010604,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017171,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022607,GO:0030163,GO:0030554,GO:0031974,GO:0031981,GO:0032042,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0035639,GO:0035694,GO:0036094,GO:0036293,GO:0042176,GO:0042221,GO:0042579,GO:0042623,GO:0042645,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043531,GO:0043565,GO:0043632,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051131,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051716,GO:0051880,GO:0060255,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070182,GO:0070407,GO:0070482,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575
Exons3
Evalue1.15e-34
EggNOG OGsCOG0466@1|root,KOG2004@2759|Eukaryota
EC3.4.21.53
DescriptionATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial
Cds size258
COG categoryO
BRITEko00000,ko01000,ko01002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789125.844811-CDS-C-tenellus_contig10315:2838..29041680789125.844811-CDS-C-tenellus_contig10315:2838..2904Choristocarpus tenellus KU2346CDSC-tenellus_contig10315 2839..2904 -
1680789125.8572824-CDS-C-tenellus_contig10315:3288..34201680789125.8572824-CDS-C-tenellus_contig10315:3288..3420Choristocarpus tenellus KU2346CDSC-tenellus_contig10315 3289..3420 -
1680789125.866466-CDS-C-tenellus_contig10315:4180..42401680789125.866466-CDS-C-tenellus_contig10315:4180..4240Choristocarpus tenellus KU2346CDSC-tenellus_contig10315 4181..4240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789125.8753834-UTR-C-tenellus_contig10315:4240..42461680789125.8753834-UTR-C-tenellus_contig10315:4240..4246Choristocarpus tenellus KU2346UTRC-tenellus_contig10315 4241..4246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10315.1.1prot_C-tenellus_contig10315.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10315 2839..4240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10315.1.1

>prot_C-tenellus_contig10315.1.1 ID=prot_C-tenellus_contig10315.1.1|Name=mRNA_C-tenellus_contig10315.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=86bp
MGSPVRQDIAMTGELSLTGKVLPVGGIKEKTIAARRAGVSCLVFPKGNKR
DFDELADYLKKGLEVHFASAYQDVYDVAFSDPEGM*
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mRNA from alignment at C-tenellus_contig10315:2839..4246-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10315.1.1 ID=mRNA_C-tenellus_contig10315.1.1|Name=mRNA_C-tenellus_contig10315.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1408bp|location=Sequence derived from alignment at C-tenellus_contig10315:2839..4246- (Choristocarpus tenellus KU2346)
CTGGCCATGGGCAGTCCGGTGAGGCAGGACATAGCTATGACTGGGGAGCT
GTCGCTGACAGGAAAGGTGTGTAATGGCGTGGTTGCAGTTGGAGACAAGT
GCAGGGGTGTGAAGTGTGTGTAGGGAGGGGATGTGGGACATGAGGGTATA
GGTAGTAGGGCTTGAGGAAAGGCTACTTGCCGACAGGGAGAAAGTGTGCA
CAGTGGGAAAAGAGAAGGTGGAGGACAATGTCGAGGTTCCTTGTAGCATG
ATGAAGGTTTCTGGGAGGGGCTAGGGGTTGGGATTGGAGACGGAGACAGA
GACAGAGACAGAGACTACTCCATTGATTATGTAGATATGGAGCAGGTCGT
GAGTTTTTTCTGCCATCATTTATGGAGTATGTAGTATGTATGATGAATAG
TCCTTTTTCTTCCAGACCCCAAAGCTAGCTGCATTATTGATGAATTAAAA
ATGTACTATTGCTCTGTGTTGAGTGCACCAGTGTTTTCATGCTGATATAT
CTCACTGATGCTATGAACAGGATCTTACAGCACCAATTGGTACACTAATG
CTTGGGGAGGCAAGAGGTGGAGAATGTCAGCCCCTTTTTTTGAAAAAGAT
ATAAAATGCTCCCCAGTCCACACTACCCCATCTTGTTGGTGTAGAGTAGT
TACTACAGAATCCCCTTACTTGCAGCACAGAACAAACTTTTTTTTTAGAG
TAGACACCCTCACCTTCTCGCCTCCTATCCCTTGACATTTGACTATTCAC
CTTCTTCACCCATGGGAATTGTTCTCTCTTCCATGTCACACTTTTTTGTG
GATGCACCAACTCACTGATGACCCAGGTGTTACCAGTAGGAGGAATTAAG
GAAAAGACTATTGCTGCCCGGCGTGCGGGTGTAAGCTGTTTAGTGTTTCC
CAAGGGAAATAAGAGGGACTTTGATGAGCTCGCGGACTACCTGAAGAAAG
GTCTCGAGGTTAGAAAAAACGTCCAAAAATGATAGGAAATGGGGGAGGGG
GGGGGATATGGCCAGAATTCACTCGTTTCAGAAATACACAACCTCAACTA
TCTCATCAACTCTGCTGCTGATGGGGGGTGTCTGTTTGGTGATCAGCATG
CTACTGCATTTGACTGACTTCAGCAGAATTTGGATGATTACTGAAGAGGC
CAGGATTCAGCTGTGATGTCAAACCTTGGTGAAATATTTATCAGTAATAC
CTTTTTGTCTAGAATTCACATATGGAAAAGGAGTTCTGAGCCATCACCAT
GTTATTATGAATCCTGAATGAAATCACAGTCAACACCCTCTCTGTCGATT
TTCCACAATCTCGTCATCTGGTTATTCTGATGTGCTTGGCAGGTGCACTT
TGCCAGTGCTTATCAAGATGTCTATGACGTGGCTTTTTCTGATCCAGAGG
GAATGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10315:2839..4246-

>mRNA_C-tenellus_contig10315.1.1 ID=mRNA_C-tenellus_contig10315.1.1|Name=mRNA_C-tenellus_contig10315.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=258bp|location=Sequence derived from alignment at C-tenellus_contig10315:2839..4246- (Choristocarpus tenellus KU2346)
ATGGGCAGTCCGGTGAGGCAGGACATAGCTATGACTGGGGAGCTGTCGCT
GACAGGAAAGGTGTTACCAGTAGGAGGAATTAAGGAAAAGACTATTGCTG
CCCGGCGTGCGGGTGTAAGCTGTTTAGTGTTTCCCAAGGGAAATAAGAGG
GACTTTGATGAGCTCGCGGACTACCTGAAGAAAGGTCTCGAGGTGCACTT
TGCCAGTGCTTATCAAGATGTCTATGACGTGGCTTTTTCTGATCCAGAGG
GAATGTAA
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