mRNA_C-tenellus_contig1031.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1031.1.2
Unique NamemRNA_C-tenellus_contig1031.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Match: D7FLS0_ECTSI (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS0_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 3.090e-63
Identity = 140/324 (43.21%), Postives = 181/324 (55.86%), Query Frame = 3 
Query:  543 GLPERSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEMEAYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAEYIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVPASVLALTLQSXXXXXXTLTPLVDYVVRIDNNGRDCEVSNSKERRDCCSCSHGNIDGAVLNPDGESPSCPPSWGIPGEVADMGSFSTQQGIQTGNIKITDKFCDHVMSLEDTQAICESGKGIELWDIGTISVCRGEVPSVDLAMGGGGRDGECHCGGASSDPVIGSEGETWDTFRDMFAQ 1514
            G  E  W VFTAGAMGAGKSHVM  L  +G FP++AFVQVDPD LRR LPEME Y+  +  TAG+LTH+EAGL+AE+L E AL++GRN+LVDGS+RNG WYAE++  LR+RFPRLRVAIIHVWAPE +V++RA RR   TGR +P SVL  T+++       L PL DY VRIDN G D    + +                +++ D       P+           S S +  +Q+ ++    +    V S  D    C              + C G+        GG GR        A   PV+ + GETW++FR  FAQ
Sbjct:  203 GSLENPWAVFTAGAMGAGKSHVMGVLGERGLFPMDAFVQVDPDSLRRKLPEMEGYVRSDPGTAGSLTHKEAGLLAELLEETALLQGRNILVDGSMRNGEWYAEHVGDLRRRFPRLRVAIIHVWAPEEEVMKRAVRRGLTTGRVIPPSVLRDTIRAVPRSVEMLAPLADYCVRIDNVGDDWRRQSQEXXXXXXXXXXXXXXXCLVSSDMSEMVLMPASNEXXXXXXXXSSSAR--LQSSDMP---EISRPVGSSLDVPTAC--------------TACTGDETRSAAEGGGEGRSRAHSEVPAVIMPVLATSGETWESFRRTFAQ 507
[Close]
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Match: A0A6H5KYQ7_9PHAE (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ7_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 3.240e-60
Identity = 136/325 (41.85%), Postives = 181/325 (55.69%), Query Frame = 3 
Query:  552 ERSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEMEAYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAEYIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVPASVLALTLQSXXXXXXTLTPLVDYVVRIDNNG----RDCEVSNSKERRDCCSCSHGNIDGAVLNPDGESPSCPPSWGIPGEVADMGSFSTQQGIQTGNIKITDKFCDHVMSLEDTQAICESGKGIELWDIGTISVCRGEVPSVDLAMGGGGRDGECHCGGASSDPVIGSEGETWDTFRDMFAQ 1514
            E  W VFTAGAMGAGKSHVM  L  +G FP++ FV+VDPD LRR LPEME Y+  +  TAG LTH+EAGL+ E+L E AL++GRN+LV+GS+RNG WYAE+I   R+RFPRLRVAIIHVWAPE +V++RA RR   TGR +P ++L  T+++       L PL DY VRIDN G    R  + S  ++ R                P  +  SC     +  E++DM    T                  + S + ++     G  +++      + C G+        GG GR G      A   PV+ + GETW++FR  FAQ
Sbjct:  204 ENPWAVFTAGAMGAGKSHVMGVLGDRGLFPMDDFVRVDPDSLRRKLPEMEGYVRSDPGTAGYLTHKEAGLLGELLEETALLQGRNILVEGSMRNGEWYAEHIRDRRRRFPRLRVAIIHVWAPEEEVMKRAVRRGLTTGRVIPPALLRDTIRAVPRSVEMLAPLADYCVRIDNVGDDGWRQSQESQQQQSR---------------RPLRQHNSCL----VSSEMSDMVMMPTSXXXXXXXXXSASA---RLQSSDMSEISRPVGSSLDV-----PTACTGDASRSAAEGGGEGRSGAHSEVPAVIMPVLATAGETWESFRRTFAQ 501
[Close]
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Match: A0A1Z5JA71_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA71_FISSO)

HSP 1 Score: 185 bits (470), Expect = 2.070e-46
Identity = 95/173 (54.91%), Postives = 119/173 (68.79%), Query Frame = 3 
Query:  549 PERSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEMEAYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAEYIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVPASVLALTLQSXXXXXXTLTPLVDYVVRIDN 1067
            P   W+VFTAGAMG+GKS+ MR L  +G FPL AFV+VDPD LRR LPE   Y++++ E AG LT +EAGL++EILT AAL EG+NVLVDGSLR+  WY EY   LR  +P +R+AIIHV AP   VL RA++RA  TGR VP  +L   +         L PLV+Y V ++N
Sbjct:  382 PTEPWVVFTAGAMGSGKSYTMRHLVNRGLFPLLAFVRVDPDELRRYLPEFHLYIQQSPEDAGTLTRKEAGLISEILTLAALQEGKNVLVDGSLRDAPWYEEYFEKLRGTYPHVRLAIIHVSAPREMVLARASKRAHSTGRIVPEELLLAAIDEVPKSVKKLAPLVNYHVELEN 554
[Close]
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Match: I2CPU2_NANGC (Zeta toxin (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPU2_NANGC)

HSP 1 Score: 174 bits (441), Expect = 5.250e-46
Identity = 93/172 (54.07%), Postives = 110/172 (63.95%), Query Frame = 3 
Query:  555 RSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEMEAYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAEYIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVPASVLALTLQSXXXXXXTLTPLVDYVVRIDNN 1070
            + W+VFTAG MGAGKSH +RWLA  G FPL  FV  DPD +R  LPEM+ Y++     AG LTH+EAG M EI+ E  L EG+NVLV GSLR+  W+A Y   LR RFP LR+AIIHV A    VL RA +RAQ T R VP  VL  ++         L  LVDY V IDN+
Sbjct:   12 QQWVVFTAGPMGAGKSHTLRWLALHGLFPLNDFVLADPDVIRNELPEMKGYIQTCPLRAGQLTHREAGYMLEIVVEEGLKEGKNVLVQGSLRDADWHARYFQDLRARFPGLRIAIIHVTASCETVLARARQRAQTTKREVPEDVLLASVHETPWAVAALRQLVDYCVSIDND 183
[Close]
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Match: A0A7S1BFA9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFA9_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.860e-45
Identity = 88/174 (50.57%), Postives = 114/174 (65.52%), Query Frame = 3 
Query:  549 PERSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEMEAYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAEYIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVPASVLALTLQSXXXXXXTLTPLVDYVVRIDNN 1070
            P   WLVFTAGAMGAGK H +R L  +   PL+ FV VDPD +R+ LPE + Y++EN   AG LT +EAG + EILT+AAL  G+NVLVDGSLR+  WY +Y   LR  +P LR+AI+HV AP   VLERA +R + TGR +P + L + +         L+PL DY   +DN+
Sbjct:   73 PTEPWLVFTAGAMGAGKGHTIRNLVERKLLPLQGFVVVDPDEVRQFLPEYKIYIKENPMMAGELTRKEAGFICEILTQAALQSGKNVLVDGSLRDSDWYIQYFAQLRADYPVLRLAILHVTAPREAVLERAQKRGEMTGRKIPIATLEMAMDQVPKAVQHLSPLSDYFCELDNS 246
[Close]
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Match: A0A7R9WY90_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WY90_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.060e-45
Identity = 94/174 (54.02%), Postives = 111/174 (63.79%), Query Frame = 3 
Query:  546 LPERSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEMEAYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAEYIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVPASVLALTLQSXXXXXXTLTPLVDYVVRIDN 1067
            +P   W+VFTAGAMGAGKS+ M  L  K  FPL AFV VDPD +R  LPE   Y+EEN   AG LT +EAG +AEILT AAL  G+NVL DGSLR+  WY  Y   LRK FP LR AI+H+ AP   VL+RAA RA  TGR VP  +L   ++        L PLVDY   ++N
Sbjct:  106 VPTEPWIVFTAGAMGAGKSYTMNKLVGKDRFPLTAFVVVDPDEIRHLLPEFHVYVEENPVLAGELTRKEAGYIAEILTLAALQAGKNVLQDGSLRDSDWYQTYFARLRKDFPSLRQAILHITAPREAVLKRAADRALVTGRVVPEHILEEAMEQVPRSVKILGPLVDYYAELNN 279
[Close]
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Match: A0A7S1ZKL5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZKL5_TRICV)

HSP 1 Score: 173 bits (439), Expect = 6.430e-45
Identity = 88/148 (59.46%), Postives = 106/148 (71.62%), Query Frame = 3 
Query:  534 CPSGLPERSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEMEAYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAEYIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVP 977
            CP G PE  W+VFTAGAMGAGK+H +R L A G FPLE+FV VDPD +RR LPE   Y+  +  TAG LT +EAG +AEIL  AAL +GRNVLVDGSLR+  WYA +   LR  +PR+R+AI+HV AP   V ERA  R++ TGR VP
Sbjct:  145 CPGGTPEDPWIVFTAGAMGAGKTHTIRHLHATGRFPLESFVSVDPDEVRRHLPEFAEYVRRSPLTAGDLTRKEAGYVAEILAGAALRDGRNVLVDGSLRDRAWYARHFEELRGEYPRVRIAILHVTAPREAVFERAEVRSRTTGRVVP 292
[Close]
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Match: B7G2X7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2X7_PHATC)

HSP 1 Score: 178 bits (452), Expect = 1.170e-44
Identity = 94/176 (53.41%), Postives = 116/176 (65.91%), Query Frame = 3 
Query:  549 PERSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEMEAYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAEYIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVPASVLALTLQSXXXXXXTLTPLVDYVVRIDNNGR 1076
            P   W+VFTAGAMGAGKS+ MR L  KG FPL AFV VDPD +RR LPE   Y++++ E AG LT +E+G +AEILT A+L EG+NVLVDGSLR+ +WY  Y   LR  FP LR+AI+H+ AP   V +RAA RA  TGR VP  +L   L+        L+PL D  V + N  R
Sbjct:  295 PTEPWIVFTAGAMGAGKSYTMRRLVEKGRFPLIAFVSVDPDDIRRHLPEFHLYVDQSPELAGELTRKESGYIAEILTLASLREGKNVLVDGSLRDWSWYKSYFERLRNEFPALRIAILHITAPRDAVFQRAADRAVTTGRIVPQELLVAALEQVPKSVEILSPLADCSVELKNAPR 470
[Close]
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Match: A0A7S4JDS4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JDS4_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.380e-44
Identity = 96/181 (53.04%), Postives = 116/181 (64.09%), Query Frame = 3 
Query:  549 PERSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEMEAYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAEYIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVPASVLALTLQSXXXXXXTLTPLVDYVVRIDNN-GRDCEV 1088
            P   ++VFTAGAMGAGKSH + WL  KG FPL AFV VDPD +RR LPE   YL+   + AG LT +EAG +AEILT AAL  G+NVLVDGSLR+  WY  Y   LR+ +P  ++AI+HV AP   V +RAA RA+KTGR VP   L L L         L PL DY   ++N  G D E+
Sbjct:  125 PTEPFIVFTAGAMGAGKSHTINWLVIKGLFPLLAFVSVDPDEIRRRLPEFSLYLQVCPDKAGELTRKEAGYIAEILTLAALQAGKNVLVDGSLRDSGWYTLYFARLRREYPNNKIAILHVVAPRDAVFQRAADRARKTGRIVPRETLELALDQVPRSVHVLAPLADYFCELNNAPGLDIEI 305
[Close]
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Match: A0A7S4QXS6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXS6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.370e-44
Identity = 89/192 (46.35%), Postives = 120/192 (62.50%), Query Frame = 3 
Query:  555 RSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEMEAYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAEYIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVPASVLALTLQSXXXXXXTLTPLVDYVVRIDNN-GRDCEVSNSKERRDCCSCS 1127
            + WLVFTAGAMGAGKS+ +  L   G FPL AFV VDPD +RR LPE   ++E N E AG LT +EAG MAEILT A L  G+NV+VDGSLR+  WY  Y   LR+ +  +R+AI+H+ AP   V++RA  R + TGR +P   L + L+        L PL DY  +++N  G++  +++  + R    CS
Sbjct:    5 KPWLVFTAGAMGAGKSYTINSLVDDGRFPLLAFVLVDPDEIRRQLPEYSYFVEHNPELAGELTRKEAGYMAEILTLAGLQAGKNVMVDGSLRDSDWYQIYFAQLRREYDGIRIAILHIDAPRDAVIQRAKERGEATGRVIPMKTLLMALEQVPRSVKILGPLADYFCKLNNAPGKEIVITSWGDLRKVEHCS 196
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1031.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS0_ECTSI3.090e-6343.21Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KYQ7_9PHAE3.240e-6041.85Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
A0A1Z5JA71_FISSO2.070e-4654.91Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
I2CPU2_NANGC5.250e-4654.07Zeta toxin (Fragment) n=1 Tax=Nannochloropsis gadi... [more]
A0A7S1BFA9_9STRA1.860e-4550.57Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7R9WY90_9STRA3.060e-4554.02Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S1ZKL5_TRICV6.430e-4559.46Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B7G2X7_PHATC1.170e-4453.41Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4JDS4_9STRA1.380e-4453.04Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S4QXS6_9STRA2.370e-4446.35Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1031contigC-tenellus_contig1031:9463..13928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLS0
PFAMsZeta_toxin
Model size2499
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.77e-67
EggNOG OGs2BIBQ@1|root,2S1DY@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-03_005260.1
DescriptionZeta toxin
Cds size1344
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1031.1.2prot_C-tenellus_contig1031.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1031 10217..13527 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789125.632195-UTR-C-tenellus_contig1031:9462..102161680789125.632195-UTR-C-tenellus_contig1031:9462..10216Choristocarpus tenellus KU2346UTRC-tenellus_contig1031 9463..10216 -
1680789125.6867878-UTR-C-tenellus_contig1031:13527..139281680789125.6867878-UTR-C-tenellus_contig1031:13527..13928Choristocarpus tenellus KU2346UTRC-tenellus_contig1031 13528..13928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789125.6415977-CDS-C-tenellus_contig1031:10216..107721680789125.6415977-CDS-C-tenellus_contig1031:10216..10772Choristocarpus tenellus KU2346CDSC-tenellus_contig1031 10217..10772 -
1680789125.65021-CDS-C-tenellus_contig1031:11188..114721680789125.65021-CDS-C-tenellus_contig1031:11188..11472Choristocarpus tenellus KU2346CDSC-tenellus_contig1031 11189..11472 -
1680789125.6675415-CDS-C-tenellus_contig1031:12041..121941680789125.6675415-CDS-C-tenellus_contig1031:12041..12194Choristocarpus tenellus KU2346CDSC-tenellus_contig1031 12042..12194 -
1680789125.6783335-CDS-C-tenellus_contig1031:13176..135271680789125.6783335-CDS-C-tenellus_contig1031:13176..13527Choristocarpus tenellus KU2346CDSC-tenellus_contig1031 13177..13527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1031.1.2

>prot_C-tenellus_contig1031.1.2 ID=prot_C-tenellus_contig1031.1.2|Name=mRNA_C-tenellus_contig1031.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=448bp
MCIVGLVYFFGSSNTYSSLTCPLPLRPASLVSGGNTKDSDPAFSCPSGLP
ERSWLVFTAGAMGAGKSHVMRWLAAKGFFPLEAFVQVDPDRLRRGLPEME
AYLEENAETAGALTHQEAGLMAEILTEAALMEGRNVLVDGSLRNGTWYAE
YIVSLRKRFPRLRVAIIHVWAPEAKVLERAARRAQKTGRAVPASVLALTL
QSVPASVLTLTPLVDYVVRIDNNGRDCEVSNSKERRDCCSCSHGNIDGAV
LNPDGESPSCPPSWGIPGEVADMGSFSTQQGIQTGNIKITDKFCDHVMSL
EDTQAICESGKGIELWDIGTISVCRGEVPSVDLAMGGGGRDGECHCGGAS
SDPVIGSEGETWDTFRDMFAQTCLIPVEEVEPEGGGRIRINRRKEEAPKG
SVLCEDFLKNGDTTMRPRMCLGPHEARRGGSEGVEASGVTNVPNARL*
back to top

mRNA from alignment at C-tenellus_contig1031:9463..13928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1031.1.2 ID=mRNA_C-tenellus_contig1031.1.2|Name=mRNA_C-tenellus_contig1031.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4466bp|location=Sequence derived from alignment at C-tenellus_contig1031:9463..13928- (Choristocarpus tenellus KU2346)
GTCGTTGATAGCATCGGGTGCACCATCTTAGCCTAGGACTGAAGGCACAA
AGACAGTGGACCAAGACAAATTTCTAGCAGTGAGGAGTCGAGCTTGTTCC
CCTGTGTACTCTTCAATTTCTAGGTTATGTTGTACGAACACTCTCATTGC
TCCTCTTGCACTCCGTAACTGTAACATGACACTCCGTAACTGTAACGTAA
CACTCCGTACCTGTAACATAACACTCCGTAACTGTAACGTAACAAACACT
CCGTAACTGTAACATAACAGTCTGTAACTGTAACGTAACACTCCGTAACT
GTAACGTAACACTCCGTAACTGTAACATAACACTTCGTAACTGTAACGTA
ACACTCCATAACTGTGACGTAACACTCCGTAACTGTAACATAACACTCCG
TATGTGTATTGTAGGTCTAGTATATTTTTTTGGTTCTTCCAACACATACA
GTTCTCTCACCTGCCCCCTCCCCCTGCGGCCTGCCTCCCTGGTTTCAGGC
GGTAATACTAAGGACAGTGACCCTGCCTTTTCCTGCCCGTCTGGGTTACC
TGAGAGGTCTTGGCTTGTGTTCACGGCTGGGGCGATGGGAGCGGGGAAAT
CGCACGTGATGCGTTGGCTCGCAGCCAAGGGTTTCTTCCCCCTAGAGGCG
TTTGTGCAGGTGGATCCAGACCGACTGCGGAGGGGTCTACCAGAGATGGA
GGCGTATTTAGAAGAAAATGCAGAGACTGCCGGCGCTCTCACTCACCAAG
AGGTGAAGATATACCTACTATCAATGCTGTTCATGTTATTGGTGTCCTGG
TCATGTTGGAAGGGAGTGCAGTGGTACAAGATGGTCTGCTTTGCTTTCAT
CCCGGGTGTATCTGTCTGTCTGTCTGTCTGTCTTTTGCTTAATTTTAATA
TTAATTTTAAATTTAAATTTAAATTTAATTCGGGTGAAAATAAAGATGCT
TTGGAATACTTTTTTTAGTTATGCATGCTTTATCAGGTAAAGAACAATGT
AAATATTTTCATTATTTATACATATTTAGGTATTTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTTTGACTTCAGCGTAGTGACTGGTGGGAGGAC
TCCTCTAATGTCGACTCCTCTAATGTCCTTGTTGTGTACTGTTTTTATTT
TGATGTGAAGAGCCGTATGATAAGGAAGAAATAATAAATATATATTTTGT
TTCCTTTTGGGTAGGTTTTCTAGTTTTTGTGACGTTATACAATATATAGG
GTTAGGGTTAGGACTAGGCTATTGTGGCCTACAGTACAGTGTACCGTACC
CATGTGGAGCATACTAATAATGCAACAAGCGGTCCTCTGTAGCTTGCTCT
GTAGCAATGAGCCAAAGTATCTTAGAGGGTAGAGGCGCGTCCATTTGGGG
GCCACAATCTAATGTTGTGATTTTGGTTTAATTTTGGCTATCGTGTTTGT
TAGGAAGTGTCAATATCCTTGACCCTGACACACATTTTCATAACGTACAC
ATTTTACCTACTCCGAAATATTGTGGAGTAGGAAAATATCATAAAAAAAC
CCATGGGAAGCCAAGCCCCAAACGGACAAACAGGGCCAAACTTATACCCT
AACCCTAAGATACTCTCACTCAATGGCATAATGGTGTTGTGAATGGTGCA
CAATATTCTTCAAATCTGTACCTGCAGCATATCATACTGTAACAGTCTAT
GTAACCGTTGAGGTCTGTTGGCACCCAACGACAGGCTGGACTCATGGCCG
AAATTCTCACGGAGGCAGCCTTGATGGAGGGAAGAAATGTGCTTGTGGAC
GGTTCTCTCAGGAACGGAACCTGGTATGCAGAGTACATTGTTAGTCTGAG
GAAACGGTTCCCTCGCCTGAGAGTTGCCATCATTCATGTGAGTATAATGA
TCACATTCTTGGAGGGTCCTGTGTACTGTCAAAGTTTTTTTTTGGGGGGG
GCGGGGGCAGGTGTGGGTGACAGAGAGCGCTGTAGATCTGGTTAACAGTC
AGCAGGAATGTATCTTCCAAGAGAAAGCGAGGGATAAAAAAGACAAAAGA
AAGAGAGAAAGAGCAAAGAGAAGAGAAAAGGAGAAAGGGGGTGAAACCTT
GACACGATGCCCTCCATTGCACCAACCCTTCCAATCCATACCTTAGGTAC
AAAGCAGTGTACTCCCATAGTCTAAAACCATAGTCTAAAACCATACAGTT
AATACAGTAGTTCTTAGTACCTGCGATTCAAATGTGGGTTCAGTTCAGTT
CAGTCAACAACAACAGTACGACCTTATATAATAATTTTTTTTAACACTGC
ATGTCAGGTTGGTTATACCAGCATCAGTAAATACTATCATATCATATTAC
TCCTTTTTTTTGTATGACTGCTCTATATGTTTAAAGACCATATCTTCATT
GTTATCCTTCTCCCTCCCCCGTCTCCCACCCCACCCCCAACCCATCCTTC
CCACAGGTGTGGGCACCGGAGGCCAAGGTCTTGGAGAGAGCAGCCCGGAG
GGCACAAAAAACGGGCAGGGCGGTGCCTGCATCTGTCCTCGCCCTGACAC
TGCAGTCTGTGCCTGCCTCCGTGTTAACATTAACGCCCCTGGTGGACTAT
GTAGTTCGTATTGACAACAACGGAAGAGATTGCGAAGTCAGTAACAGCAA
AGAGAGACGCGATTGCTGCAGCTGTTCCCATGGCAACATTGATGGTGCCG
TGTTGAATCCCGATGGGGAGAGCCCTTCCTGTCCCCCCAGGTGATGGATG
CACTGAATGACTTGATGCATCTGGTGTGTGAAGGTGTTATTGTTGTTGTT
GTTGGTGGTGTTGGTGGTGGTGGACTCGGTGTGTACTTCGGGGTGGTGAT
AGGTACTATAGAGCGCGTGACAAGTCAATTGTCCAACATTTCTGAAAAAA
AAAAAAATCTGGTCAGAGAGCCCTTTTATTAGACGCATGACCAGAAACAA
CTTAGGGTTAGGGTTAACCGCATGGATATAACGATCCCTTACCCTAGTGA
AGGGTCAGAGTGGTACTCACAGAGAACACAACACTTCGTGTCTTCAGGGC
TGTAATCTCAAGAGATATGGAATCGACAACACCTCTCTCATTCCGGTATG
CACCACTGCTCTCATTCCCCCCCCTCCCCCTCCCACATCTTGTTTCTTCA
ACTCAGTTGGGGTATACCTGGTGAGGTCGCGGACATGGGGTCCTTTTCTA
CCCAACAAGGGATTCAGACTGGCAACATCAAAATCACAGACAAATTTTGC
GATCACGTGATGTCACTGGAAGACACCCAGGCAATTTGTGAGTCTGGGAA
GGGTATAGAATTGTGGGACATTGGTACCATCAGCGTTTGTAGAGGTGAAG
TCCCTAGTGTGGATCTAGCAATGGGAGGTGGAGGTCGGGATGGAGAGTGT
CACTGTGGAGGGGCCAGTAGCGACCCAGTGATAGGTAGTGAAGGAGAGAC
ATGGGATACGTTCAGGGACATGTTTGCTCAGACTTGTCTCATTCCTGTGG
AGGAAGTGGAGCCTGAGGGGGGGGGCAGGATACGAATTAATAGAAGGAAA
GAGGAGGCACCTAAGGGCAGTGTATTGTGTGAAGACTTTCTGAAGAATGG
AGACACCACAATGCGTCCTAGGATGTGTTTGGGCCCCCATGAAGCAAGGC
GAGGTGGAAGTGAAGGAGTTGAAGCGTCTGGTGTTACCAACGTTCCCAAT
GCAAGGCTATGACCAGAAAGAAGGCCATGTGTGATGTGTGTTGTTCCTGT
AGAGCGATTACAAGAATGAGAGGGCGTATGAGGGCTTAGGACAGATATAT
CCTACTGGCTAAATGTGACATACAGGGGTCTCTTATTGGTGTAAGATGTT
ACCTTTAACATGTATGTACCCCTCGTTCTTTGGTAAGCATGCATGTCTCC
GTACCTTGGAATTTAGTTTTCTATCAATGCTTTTTTGTCCTGGTGTTCCA
CTTAGTACAAATGCGTCCTGCTTTTTGCTCAGCTGAGAATTGGAGTTTGT
CAATGCAGTATCGAAGGCCAAAATGGTGAGCTTGTTACGCTTGACTGTCT
CCTCCCTTGCCAGTGCAGTGTGTGTGATGTGTACTTGAAGGAGTTTCCTT
AAGTTGCTTACTACCTTTGTGTTAGTATAGTTATTTTTTTATATAGTTAA
ATACATCGGTGGCTCGATCACACATCGCTGTCACTCCATGAGATGTCTCC
CTACCCAGTCAGTGACTTAGACAAGCGATGTATTTGCTTTACTGAAGGTA
TGTAATCCGTAGTGCTCCACTGATATTTTTTTATTGTGGCGTCATTTGTG
CTGGGCCAAGGACCGAGCACTGCAGGATTTGGCCACGGTTGACTGGAGAC
AAATATTGAAGTGTTGAAGCCTTCGAAGCTCTTCTTCAGGGTGCTCTTGG
AGGATGGTAGTGTGGACTGCAAGGTGATTTTTTGTTAAATGCTCTCCACA
CTCGGCAATTACTGAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig1031:9463..13928-

>mRNA_C-tenellus_contig1031.1.2 ID=mRNA_C-tenellus_contig1031.1.2|Name=mRNA_C-tenellus_contig1031.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1344bp|location=Sequence derived from alignment at C-tenellus_contig1031:9463..13928- (Choristocarpus tenellus KU2346)
ATGTGTATTGTAGGTCTAGTATATTTTTTTGGTTCTTCCAACACATACAG
TTCTCTCACCTGCCCCCTCCCCCTGCGGCCTGCCTCCCTGGTTTCAGGCG
GTAATACTAAGGACAGTGACCCTGCCTTTTCCTGCCCGTCTGGGTTACCT
GAGAGGTCTTGGCTTGTGTTCACGGCTGGGGCGATGGGAGCGGGGAAATC
GCACGTGATGCGTTGGCTCGCAGCCAAGGGTTTCTTCCCCCTAGAGGCGT
TTGTGCAGGTGGATCCAGACCGACTGCGGAGGGGTCTACCAGAGATGGAG
GCGTATTTAGAAGAAAATGCAGAGACTGCCGGCGCTCTCACTCACCAAGA
GGCTGGACTCATGGCCGAAATTCTCACGGAGGCAGCCTTGATGGAGGGAA
GAAATGTGCTTGTGGACGGTTCTCTCAGGAACGGAACCTGGTATGCAGAG
TACATTGTTAGTCTGAGGAAACGGTTCCCTCGCCTGAGAGTTGCCATCAT
TCATGTGTGGGCACCGGAGGCCAAGGTCTTGGAGAGAGCAGCCCGGAGGG
CACAAAAAACGGGCAGGGCGGTGCCTGCATCTGTCCTCGCCCTGACACTG
CAGTCTGTGCCTGCCTCCGTGTTAACATTAACGCCCCTGGTGGACTATGT
AGTTCGTATTGACAACAACGGAAGAGATTGCGAAGTCAGTAACAGCAAAG
AGAGACGCGATTGCTGCAGCTGTTCCCATGGCAACATTGATGGTGCCGTG
TTGAATCCCGATGGGGAGAGCCCTTCCTGTCCCCCCAGTTGGGGTATACC
TGGTGAGGTCGCGGACATGGGGTCCTTTTCTACCCAACAAGGGATTCAGA
CTGGCAACATCAAAATCACAGACAAATTTTGCGATCACGTGATGTCACTG
GAAGACACCCAGGCAATTTGTGAGTCTGGGAAGGGTATAGAATTGTGGGA
CATTGGTACCATCAGCGTTTGTAGAGGTGAAGTCCCTAGTGTGGATCTAG
CAATGGGAGGTGGAGGTCGGGATGGAGAGTGTCACTGTGGAGGGGCCAGT
AGCGACCCAGTGATAGGTAGTGAAGGAGAGACATGGGATACGTTCAGGGA
CATGTTTGCTCAGACTTGTCTCATTCCTGTGGAGGAAGTGGAGCCTGAGG
GGGGGGGCAGGATACGAATTAATAGAAGGAAAGAGGAGGCACCTAAGGGC
AGTGTATTGTGTGAAGACTTTCTGAAGAATGGAGACACCACAATGCGTCC
TAGGATGTGTTTGGGCCCCCATGAAGCAAGGCGAGGTGGAAGTGAAGGAG
TTGAAGCGTCTGGTGTTACCAACGTTCCCAATGCAAGGCTATGA
back to top