mRNA_C-tenellus_contig103.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig103.2.2
Unique NamemRNA_C-tenellus_contig103.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig103.2.2 vs. uniprot
Match: A0A6H5JS60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS60_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 1.350e-76
Identity = 137/202 (67.82%), Postives = 158/202 (78.22%), Query Frame = 2 
Query:  185 TTRRAFAQLLLGGMGLSLATVVD---TDTASAAPPDLVELDAQIMLFKEIFIPTLQYLKAQQFDAARTNTNYITRFLNLKKTIDTFIVTASDVVDDPD---LMEKAVDMAQEVDALFTNFDSSVYTIIFIPGDADGVLPPGAEKYLKQAYGFYDSVLKLLDFYITLVPPETQDKAKAILPAKMAALPKFLFKENSVVMKAKM 772
            ++R  + + +LGG  L LAT      +  A AA   L EL+A IM+ KE+F PTLQYLKA+QFDAARTNTNYITRF NLKK ID+FIV ASDVVDDPD    +EKA DMAQEV+ALFTNFDSSVYTIIFIP DA+GVLPPGAEKYLKQAYGFYD + K+LDFYI LVPPET+  A+ +LPAK A LP FLFKE S +MK K+
Sbjct:   66 SSRGEYVKTVLGGGALGLATAFSPALSKRAEAAAQSLEELEADIMICKEVFKPTLQYLKAEQFDAARTNTNYITRFFNLKKKIDSFIVQASDVVDDPDTASFIEKAFDMAQEVEALFTNFDSSVYTIIFIPADAEGVLPPGAEKYLKQAYGFYDDINKVLDFYIDLVPPETKAAAEKLLPAKRAPLPGFLFKEKSTLMKEKV 267
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BLAST of mRNA_C-tenellus_contig103.2.2 vs. uniprot
Match: D7FL66_ECTSI (TPT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL66_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 1.790e-74
Identity = 140/204 (68.63%), Postives = 159/204 (77.94%), Query Frame = 2 
Query:  167 SRSPGPTTRRAFAQLLLGGMGLSLATVVD---TDTASAAPPDLVELDAQIMLFKEIFIPTLQYLKAQQFDAARTNTNYITRFLNLKKTIDTFIVTASDVVDDPDLMEKAVDMAQEVDALFTNFDSSVYTIIFIPGDADGVLPPGAEKYLKQAYGFYDSVLKLLDFYITLVPPETQDKAKAILPAKMAALPKFLFKENSVVMKAK 769
            S S   ++R  + + +LGG  L LAT      +  A AA   L EL+A IM+ KE+F PTLQYLKA+QFDAARTNTNYITRF NLKK ID+FIV ASDVV+DPD MEKA DMAQEV+ALFTNFDSSVYTIIFIP DADGVLPPGAEKYLKQAYGFYD + K+LDFYI LVPPET+  A+ +LPAK A LP FLFKE S +MK K
Sbjct:   62 SMSLAGSSRGEYVKTVLGGGALGLATAFSPALSKRAEAAAQSLEELEADIMICKEVFKPTLQYLKAEQFDAARTNTNYITRFFNLKKKIDSFIVQASDVVEDPDTMEKAFDMAQEVEALFTNFDSSVYTIIFIPADADGVLPPGAEKYLKQAYGFYDDINKVLDFYIDLVPPETKAAAEKLLPAKRAPLPSFLFKEKSTLMKEK 265
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BLAST of mRNA_C-tenellus_contig103.2.2 vs. uniprot
Match: A0A835YWX6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX6_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.780e-37
Identity = 78/189 (41.27%), Postives = 118/189 (62.43%), Query Frame = 2 
Query:  188 TRRAF-AQLLLGGMGLSLATVVDTDTASAAPPDLVELDA--QIMLFKEIFIPTLQYLKAQQFDAARTNTNYITRFLNLKKTIDTFIVTASDVVDDPDLMEKAVDMAQEVDALFTNFDSSVYTIIFIPGDADGVLPPGAEKYLKQAYGFYDSVLKLLDFYITLVPPETQDKAKAILPAKMAALPKFLFKE 745
            +RR+F + ++LGG   +         A AA P+    DA   +M+ K +  P+ +Y K  QFD+ARTN NYITR L ++K I   I+    + DD  L+E+A D+A   D+ F+N+DSS+YT+IFIP   DG LP G++KY  QA  +YD  + +LD +I+L P + +++A+A   A++  LP+FLFKE
Sbjct:    7 SRRSFTSSVVLGGAAAAFTAWTHPKVAQAAAPEQTFEDAVATLMVCKAVLEPSHKYFKLNQFDSARTNVNYITRQLGVRKAIGKVIIEGGAICDDEALVEEASDLAATADSTFSNYDSSIYTVIFIPPGEDGSLPKGSDKYFNQADVYYDQSVHMLDVFISLAPEDVRERARAKAEARVKELPRFLFKE 195
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BLAST of mRNA_C-tenellus_contig103.2.2 vs. uniprot
Match: A0A2V3IGD1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGD1_9FLOR)

HSP 1 Score: 62.4 bits (150), Expect = 5.900e-8
Identity = 39/124 (31.45%), Postives = 67/124 (54.03%), Query Frame = 2 
Query:  332 PTLQYLKAQQFDAARTNTNYITRFLNLKKTIDTFI--VTASDVVDDPDLMEKAVDMAQEVDALFTNFDSSVYTIIFIPGDADGVLPPGAEKYLKQAYGFYDSVLKLLDFYITLVPPETQDKAKA 697
            P  +Y+    +D  RTN NY TR L L+K +      ++  D  D       A+D+  ++D   T  D+S+YT +FIP D DGV    A KY +QA  +Y + L  ++ +++ +P +  ++A++
Sbjct:    3 PVRRYIDEGAWDKGRTNVNYCTRMLALRKNMKKVAEQLSGDDYYD-------ALDITADLDNTMTQLDASLYTPLFIPAD-DGVSVEQA-KYQRQASEYYSNALDYIESFLSKLPTDVLERAQS 117
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig103.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JS60_9PHAE1.350e-7667.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL66_ECTSI1.790e-7468.63TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YWX6_9STRA5.780e-3741.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V3IGD1_9FLOR5.900e-831.45Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig103contigC-tenellus_contig103:3708..7631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FL66
PFAMsTPT
Model size2334
Max annot lvl2759|Eukaryota
KEGG koko:K15280
KEGG TC2.A.7
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.45e-79
EggNOG OGsCOG0697@1|root,KOG1443@2759|Eukaryota
DescriptionUDP-glucose transmembrane transport
Cds size552
COG categoryEG
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig103.2.2prot_C-tenellus_contig103.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig103 5267..7408 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.7434514-UTR-C-tenellus_contig103:3707..52661680789124.7434514-UTR-C-tenellus_contig103:3707..5266Choristocarpus tenellus KU2346UTRC-tenellus_contig103 3708..5266 -
1680789124.7947016-UTR-C-tenellus_contig103:7408..76311680789124.7947016-UTR-C-tenellus_contig103:7408..7631Choristocarpus tenellus KU2346UTRC-tenellus_contig103 7409..7631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.7559597-CDS-C-tenellus_contig103:5266..54311680789124.7559597-CDS-C-tenellus_contig103:5266..5431Choristocarpus tenellus KU2346CDSC-tenellus_contig103 5267..5431 -
1680789124.7658587-CDS-C-tenellus_contig103:6304..64421680789124.7658587-CDS-C-tenellus_contig103:6304..6442Choristocarpus tenellus KU2346CDSC-tenellus_contig103 6305..6442 -
1680789124.775086-CDS-C-tenellus_contig103:6829..69821680789124.775086-CDS-C-tenellus_contig103:6829..6982Choristocarpus tenellus KU2346CDSC-tenellus_contig103 6830..6982 -
1680789124.7861996-CDS-C-tenellus_contig103:7312..74081680789124.7861996-CDS-C-tenellus_contig103:7312..7408Choristocarpus tenellus KU2346CDSC-tenellus_contig103 7313..7408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig103.2.2

>prot_C-tenellus_contig103.2.2 ID=prot_C-tenellus_contig103.2.2|Name=mRNA_C-tenellus_contig103.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=184bp
MGLSLATVVDTDTASAAPPDLVELDAQIMLFKEIFIPTLQYLKAQQFDAA
RTNTNYITRFLNLKKTIDTFIVTASDVVDDPDLMEKAVDMAQEVDALFTN
FDSSVYTIIFIPGDADGVLPPGAEKYLKQAYGFYDSVLKLLDFYITLVPP
ETQDKAKAILPAKMAALPKFLFKENSVVMKAKM*
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mRNA from alignment at C-tenellus_contig103:3708..7631-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig103.2.2 ID=mRNA_C-tenellus_contig103.2.2|Name=mRNA_C-tenellus_contig103.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3924bp|location=Sequence derived from alignment at C-tenellus_contig103:3708..7631- (Choristocarpus tenellus KU2346)
TGCCACGGAGTAAGCGTGTCTGGTTCCCTTAGGAGTTCATCATGTCACCC
TGCAACAGTAATGACAATGTCAAACGAGCCCGGTGAGATTTTTGTTGACG
TCGAACTGCCAGGTATTCCCCATTGGATCTGTAATAAGTCGTAAAAGCTT
CTGCCTATATCTATTTTCACGTTCACCAGGTCCCACCACGCGTCGAGCGT
TTGCACAGTTGCTATTAGGGGGAATGGGCCTGAGTTTGGCGACAGTGGTG
GACACGGATACAGCATCGGCGGCTCCACCAGATCTTGTAGAATTGGATGC
CCAGATTATGCTTTTTAAGGTGTGTGCCAGGCTGCCTCTGTGGGAGTGCC
TTCACGTTGAGTTTTGCACAGACTTACTGCTGTATACGACAAAGAAACAT
GTTGCCATGCCTGTTGAAGTTCCTGGAATAGTTAAAAGCACCTGCTGCAT
GCCCTCCAATCTCGATTGGATGAGTATTTTTTCTAGTCCACCGCTCCTCT
AGTGTATGGGTGATGAGTTGACAGTCCCAGTCTATATTCTGTTCCTTGGT
CTATGGGTCATAGATGCACAATGGAGTCACACAAGCGCTTGCAGGATAAA
CGATTTTGTTTTAGCGATTGTGTGACTTTTGTGCTATGACTGGGAGCAGG
AAATCTTCATACCCACCCTCCAGTACCTCAAGGCACAGCAATTCGATGCT
GCAAGGACCAACACAAACTACATCACACGCTTCCTCAACCTGAAGAAGAC
CATTGACACGTTCATCGTGACTGCGAGCGATGTTGTGGATGACCCTGACT
TGGTAAGTAGCAATAGGACATATGCCAATGATGGAGATATGCTTCTGAAT
TGTAAGGGCACGCTTACCTTTGAACACACATCATCACACTATTTCTCAAT
CTGCTCTGGGGTGCTGGAAAGGATACCTACTTTCCTTGTGCCATGCACGA
TACTATTGCCCTAGTAAAGGTTGCCCGAGCCCCTGAGTAAGGACGTTTTT
AGATTTTCTTCTTAATTTTGTTTTTTCTCTGAGTGGAAATCGATCACCTG
AACAAATTATTGACTCTGTAGTGGTTTGCATGCATGTGTCGCACATTACC
TCGCCTCTATTCTCAATTCACCTGACCTCATTTGTCTCATAAACTCTTGC
TCAATATTACTCATTTTTCACTGTGATCTATCAATCCAGATGGAGAAAGC
TGTGGACATGGCTCAGGAGGTTGATGCGCTCTTCACAAACTTTGACTCTT
CTGTGTACACCATCATTTTCATTCCTGGTGATGCTGATGGAGTGCTCCCC
CCAGGGGCTGAGAAGTACCTTAAGCAGGTTAGCTGATCAACACTCATTAA
TATATAAATATTGATTTTTTTTTTTGTATTATCAGTATACTTTGTCTTGG
TATGTTCCACTCACAAATATTGTAGCTTTTCCCCTTTATGTATGTATTGT
GAACACATATATAATTCAAATTTGAGGGCCCTCACTTGTTCGCATACAGT
TCCTCCACATAGTCCATGATTGAGCACTTGAATACATCACTCTCCCCTTG
ATTTTTGAATGTGGTTCATGTATGAGATGCTCATTCATCGGTACGAAACT
CACCATATCAGTTCCGTGTAAAACAGATGAAAAGTCTGGAAATTCCAGGA
ATTATTGTAGCACTATGGAGAAATTGATGCTGAAGTGCATGTTTATGTCA
TTGATCGCCTAGGAGGATTTGCAGGGCAATGTTGCTCGGATTATTTTGTG
AAATGTATGGTAGCATTTGGTATGAGGTTTTCTTTCTGTACCATTTTCAA
AAGCTCTATGTGTCTTGCTCTGTGGCATCATGTAGGTCAATGAAGCGCTT
ATAGAACCCACCTAAGGCATCTCATGGTGCTCTGTGCTAGACAATATTGC
ATCTCAACATTGTCTAGCACATGAACAACCATGTCTAAGATCACAAAGGT
GATGTATGAGGTCTAACACAGTTGATTATTGCTTATTAAATATGGCCAGC
TTCCAATACTCTTGGTGTCCTCGAGGCTTTCGCATGTTTGTTTGACATGT
TTTCCATAGAACAGAGGAGACATTAGACCATTCTGCCCAATATGGCAACA
GTCCTTTCCATTTAAACAAGTTTGTCGAGAAGAATAATCCTAGCAGCTGG
ACGTATAAGCTAGCTTAACAGTTAATACCTATCTCTGCTTCTTTTGTCAG
GCCTATGGTTTCTATGATTCTGTGCTCAAGTTGTTGGACTTCTACATTAC
CCTGGTGCCACCTGAGACTCAGGACAAGGCCAAGGCAATACTGCCTGCGA
AAATGGCTGCGTTGCCTAAGTTCCTCTTCAAGGAAAACAGTGTCGTGATG
AAAGCCAAGATGTAATGTGTGTTTGTTTCAGGGTGTTGGACACATAAAGG
TATAGTTACATGCTTTGAGACAAGAATGCATAGTCTATGCCAAGTGGAGG
GTATGTTGGTATTTTTCATTTTTAGAGCGCATACATGTATACTGTATTTT
CACTCTCAGCAGAGTTAAGAATTGAAGGCTCATCGTTACATTGATTTGAC
TCCAAACTTATTTGTGTGTTCTACATGTAGATATCATGAACCTTCAAGTC
TTTGCTATGCGGGGTGACTAACCCTAACCCTAGCATATTTCAAATAGCTC
CTAATCTCTCCGTAAAATTCCTGGGACTCATGGAGTGAGTTCCCAGTAAG
GCGTAAGACCTTCCCAATCACAGTGAAGGGACCGGATGATATGCTATTAT
GTTTGATAGGCAACAAATACATACAACGTACCAAGAGCCTTGCCTGTAGC
TTCAGACTTCAAAAGATATATTAGGACTAGCCACATTTGGGAGGTTTAAA
GTGGAACCTCTTTGCTTCTGGTACACCGTTGTATGGTTGTGGCAGGGGGG
TAGACCTTATTGTTGGAAGTGTGTGCATCAAGAAGATGATATCATATGTT
CTGGCACAGTGAGTGGATGTGAATATATTGACTAAGATCAGTCCAGAGTG
GTACTTGCCGTCAGAGATCACATGACATTCAGGCCAGTATGTTGCCTGTT
TGGATGCGTCAAGAATTCATATCACACTGGTTTGCATGACTGACACTGTG
TACATGTCACCATCTAGTGCAATGAAGATCGATGAGGGTGTGTGGTCAAG
GCAATGTTGTGAAAATGCAGTGCACAAACTTGGTCCATCTAGGTTGGATG
TGTACATCAAAAGTAGAATTCTTCCTCCGTGCTACTTCCTTTTTGAAAAT
AATGGATACAACAAGAATAGTCACACTGGACTAAGAGGTGAAGTTGATTA
GATACTGTTTAGGGAATTACACAATACTGCCAACAAGAGTCTACTTTCTG
ATGTTGTGAGACATTGGGAGTTAGGGTTAGGGATGAGGCTATTGTTTGTT
GTATGTATTGGACATGTAGTGGGTGCAACACGCAAGGTCTACCTCCTCAA
CACTCAATTGATGATGTGCCCATTGTGGGAAATGGATATATTATCAAGTG
AAAGTGCGGAACTGACAATTTCAAAATGAACCCTAGAACCAGATGACAGA
GGGATCAGGCACAGGAGGGGGAGAACTTGACCCTTAGCAGAGGCTTAATG
CATAAGGCTGCCATTACACTCTATCTCAGGCATGTATCCAGCAGTGTGCT
GAAGTATCGATCTTTGCCTCATAAATGTGCCATACGTGCACGAAGGATAC
TCAAAAGATATGGTTAGGGTTAGGGTTTCACTACAATACAACGATGATAA
ATAGTAGGTAAGCCAGACGACTTTGCCTGATGTTAGCACGTGCGTGCTGA
TTGTTGTGCAACATCCCTCAATCCATCAAGTTGTGACTGTATTGTACACG
TCTCTGACAATGGGGATCAAGTGGGGCAGAACGCCCTCAGGAGAGATTGA
GAGTGACGAGTAGTTAATTTTGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig103:3708..7631-

>mRNA_C-tenellus_contig103.2.2 ID=mRNA_C-tenellus_contig103.2.2|Name=mRNA_C-tenellus_contig103.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=552bp|location=Sequence derived from alignment at C-tenellus_contig103:3708..7631- (Choristocarpus tenellus KU2346)
ATGGGCCTGAGTTTGGCGACAGTGGTGGACACGGATACAGCATCGGCGGC
TCCACCAGATCTTGTAGAATTGGATGCCCAGATTATGCTTTTTAAGGAAA
TCTTCATACCCACCCTCCAGTACCTCAAGGCACAGCAATTCGATGCTGCA
AGGACCAACACAAACTACATCACACGCTTCCTCAACCTGAAGAAGACCAT
TGACACGTTCATCGTGACTGCGAGCGATGTTGTGGATGACCCTGACTTGA
TGGAGAAAGCTGTGGACATGGCTCAGGAGGTTGATGCGCTCTTCACAAAC
TTTGACTCTTCTGTGTACACCATCATTTTCATTCCTGGTGATGCTGATGG
AGTGCTCCCCCCAGGGGCTGAGAAGTACCTTAAGCAGGCCTATGGTTTCT
ATGATTCTGTGCTCAAGTTGTTGGACTTCTACATTACCCTGGTGCCACCT
GAGACTCAGGACAAGGCCAAGGCAATACTGCCTGCGAAAATGGCTGCGTT
GCCTAAGTTCCTCTTCAAGGAAAACAGTGTCGTGATGAAAGCCAAGATGT
AA
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