mRNA_C-tenellus_contig10297.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10297.1.1
Unique NamemRNA_C-tenellus_contig10297.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.030e-45
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:  120 MTSDNDGVLHPIVLQLESINLEDDVPRVQPTPSFIDYEIAPQSNLLQYVDHAGYRTELGAELEAIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSNDPNKEALHMNTFQV 458
            M  +  GV HP VL LES+ LEDDVPRVQPTP  IDYE+APQSNLLQYVDHAGY+T LG+E+EAIGELEKVL+ G MHVN+LY +RSVSRAIPMVS S DPNK ALHMNTF+V
Sbjct:    1 MAENGRGVFHPNVLSLESLKLEDDVPRVQPTPQSIDYEVAPQSNLLQYVDHAGYKTALGSEVEAIGELEKVLEFGRMHVNVLYTFRSVSRAIPMVSGSGDPNKTALHMNTFKV 113
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BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Match: A0A7S1U2Y5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2Y5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.440e-15
Identity = 36/83 (43.37%), Postives = 61/83 (73.49%), Query Frame = 3 
Query:  210 TPSFIDYEIAPQSNLLQYVDHAGYRTELGAELEAIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSNDPNKEALHMNTFQV 458
            TP  I+ E+AP +N ++Y DH G+ +  G E+EA  ++E++L+ G   V++LY +RSVSRAIPM++D+N PNK+ ++  T+++
Sbjct:    2 TPKCIEMELAPAANPVRYADHTGFPSSFGQEMEATAQIERILEQGQHFVHMLYTFRSVSRAIPMITDANAPNKDDMNRRTYEI 84
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BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Match: F0YQA9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQA9_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 1.480e-11
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 3 
Query:  165 LESINLEDDVPRVQPTPSFIDYEIAPQSNLLQYVDHAGYRTELGAELEAIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSNDPNKEALHMNTF 452
            L S +L D+VP+VQ     +++ +   SN ++Y DH G +TE   E++A  ++E +L  G  H+++LY +RSV RA+PMV+D    +K  L++ TF
Sbjct:   15 LSSFSLPDNVPKVQSEFLTLEFSMRSGSNEIRYQDHIGLQTEFAPEIKATADVEALLLEGSEHIHMLYTFRSVGRAVPMVNDQGLQSKNELNLQTF 110
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BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Match: F0YL26_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL26_AURAN)

HSP 1 Score: 75.1 bits (183), Expect = 7.190e-11
Identity = 36/111 (32.43%), Postives = 65/111 (58.56%), Query Frame = 3 
Query:  120 MTSDNDGVLHPIVLQLESINLEDDVPRVQPTPSFIDYEIAPQSNLLQYVDHAGYRTELGAELEAIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSNDPNKEALHMNTF 452
            M  D+ G+       L   +L D+VP+VQ     +++ +   +N ++Y DH G +TE   E++A  ++E +L  G  H+++LY +RS+ RA+PMV+D    +K  +++ TF
Sbjct:    1 MERDSCGITVDETGGLSGFSLPDNVPKVQSEFLTLEFSMRSGTNAIRYQDHIGLQTEFAPEIKATADVEALLLEGSEHIHMLYTFRSIGRAVPMVNDQGRQSKNEINLQTF 111
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BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Match: UPI000644A63A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A63A)

HSP 1 Score: 65.9 bits (159), Expect = 6.860e-8
Identity = 31/98 (31.63%), Postives = 56/98 (57.14%), Query Frame = 3 
Query:  165 LESINLEDDVPRVQPTPSFIDYEIAPQSNLLQYVDHAGYRTELGAELEAIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSNDPNKEALHMNTFQV 458
            LES    DD   ++  PS + Y     +N   ++D   + T+   E+ A+ +LE++L  G  ++N++Y YRS S+A+P V +S  PNK+ ++   ++V
Sbjct:   15 LESFPFNDDQSLIESLPSTVGYVPYNSNN---FMDRGAFETQWAEEMSAMEKLEELLKAGEQYINMVYTYRSCSKALPQVKNSEQPNKQQIYEGYYEV 109
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BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Match: A0A8J2T1L4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1L4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.100e-7
Identity = 34/96 (35.42%), Postives = 57/96 (59.38%), Query Frame = 3 
Query:  195 PRVQPTPSFIDYEIAPQSNLLQYVDHAGYRTELGAELEAIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSNDPNKEALHMNTFQV---QIENL 473
            P++Q   + ++  +   +N +Q+ DH G +TEL  E  A   +E ++  G  H+ +LY +RSV RA+P+V++ +  NK  L + TFQV   QIE +
Sbjct:   32 PKIQSHATGLELAMLSGTNSIQFQDHIGLQTELAEETIATAGMEALVVEGLEHIKMLYTFRSVGRAVPVVNNLSIENKYKLDLETFQVLTPQIEKI 127
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BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Match: A0A8J4PMG3_9MYCE (DUF1394 domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PMG3_9MYCE)

HSP 1 Score: 62.8 bits (151), Expect = 6.620e-7
Identity = 30/98 (30.61%), Postives = 54/98 (55.10%), Query Frame = 3 
Query:  165 LESINLEDDVPRVQPTPSFIDYEIAPQSNLLQYVDHAGYRTELGAELEAIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSNDPNKEALHMNTFQV 458
            LE+    DD   ++   S I Y+    S  + Y D   + T+   E +++ ++E++L +G   +N++Y YRS S+A+P V  S   NK+ ++  TF+V
Sbjct:   20 LETFPFRDDQSEIETPSSTIGYQNYDTS--INYADRGAFETQWSDETQSMEKMEEILKVGEGFINMVYTYRSCSKALPQVKTSEQTNKQQIYEGTFEV 115
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BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Match: D3BK91_POLPP (Component of SCAR regulatory complex n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BK91_POLPP)

HSP 1 Score: 60.8 bits (146), Expect = 2.710e-6
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 3 
Query:  165 LESINLEDDVPRVQPTPSFIDYEIAPQSNLLQYVDHAGYRTELGAELEAIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSNDPNKEALHMNTFQV 458
            LES   +DD   ++  PS + Y  +  SN   + D   Y T+   E+ A+ +++++L  G   +N++Y YRS S+A+P V  S   NK+ ++  TF+V
Sbjct:   15 LESFPFQDDQSLIEELPSSVGYS-SYSSNA--FFDRNAYDTQWAEEMAAMEKMDELLKAGEHFINMVYTYRSCSKALPQVKTSEQANKQQIYEGTFEV 109
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BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Match: F0ZFF2_DICPU (Rac-binding component of scar regulatory complex n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZFF2_DICPU)

HSP 1 Score: 60.5 bits (145), Expect = 3.590e-6
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 3 
Query:  165 LESINLEDDVPRVQPTPSFIDYEIAPQSNLLQYVDHAGYRTELGAELE-AIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSNDPNKEALHMNTFQV 458
            LES  + DD   ++   + I YE    S  L Y D   Y T+  +E   A+ ++E+VL +G   +N++Y YRS S+A+P V  ++  NK  ++  TF+V
Sbjct:   20 LESFPIFDDQSEIEAPSTTIGYETYDSS--LNYADRGAYETQTWSEETIAMEKMEEVLKMGDQFINMVYTYRSCSKALPTVKTADQANKTQIYEGTFEV 116
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BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Match: A0A151ZAX9_9MYCE (Component of SCAR regulatory complex n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZAX9_9MYCE)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-5
Identity = 27/98 (27.55%), Postives = 50/98 (51.02%), Query Frame = 3 
Query:  165 LESINLEDDVPRVQPTPSFIDYEIAPQSNLLQYVDHAGYRTELGAELEAIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSNDPNKEALHMNTFQV 458
            L+ + + DD   ++     I Y      N   ++D   + T+   E  A+ ++E +L +G   +N++Y YRS S+A+P V   + PNK+ ++   F V
Sbjct:   20 LDMVQIHDDQSSIESLQPVIGYNAYDSIN---FIDRGAFETQWNEETVAMEKMEDILRVGEGFINMVYTYRSCSKALPQVKSQDQPNKQQIYEGIFAV 114
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10297.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G6Y8_ECTSI1.030e-4576.11UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1U2Y5_9STRA1.440e-1543.37Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YQA9_AURAN1.480e-1138.54Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YL26_AURAN7.190e-1132.43Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
UPI000644A63A6.860e-831.63hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J2T1L4_9STRA2.100e-735.42Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J4PMG3_9MYCE6.620e-730.61DUF1394 domain-containing protein n=1 Tax=Polyspho... [more]
D3BK91_POLPP2.710e-632.65Component of SCAR regulatory complex n=1 Tax=Polys... [more]
F0ZFF2_DICPU3.590e-634.34Rac-binding component of scar regulatory complex n... [more]
A0A151ZAX9_9MYCE1.940e-527.55Component of SCAR regulatory complex n=1 Tax=Tiegh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10297contigC-tenellus_contig10297:926..3186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6Y8
PFAMsDUF1394,FragX_IP
Model size1142
Max annot lvl2759|Eukaryota
KEGG koko:K05749
KEGG Pathwayko03013,ko04810,map03013,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006928,GO:0008064,GO:0008150,GO:0009653,GO:0009987,GO:0010639,GO:0016043,GO:0030054,GO:0030175,GO:0030832,GO:0030834,GO:0030835,GO:0031143,GO:0031209,GO:0031252,GO:0032433,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0040011,GO:0042995,GO:0043242,GO:0043244,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0098858,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
Exons3
Evalue4.27e-50
EggNOG OGsKOG3534@1|root,KOG3534@2759|Eukaryota
Descriptionpositive regulation of neurotrophin TRK receptor signaling pathway
Cds size360
COG categoryE
BRITEko00000,ko00001,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.545128-UTR-C-tenellus_contig10297:925..15881680789124.545128-UTR-C-tenellus_contig10297:925..1588Choristocarpus tenellus KU2346UTRC-tenellus_contig10297 926..1588 -
1680789124.649095-UTR-C-tenellus_contig10297:3067..31861680789124.649095-UTR-C-tenellus_contig10297:3067..3186Choristocarpus tenellus KU2346UTRC-tenellus_contig10297 3068..3186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.6177826-CDS-C-tenellus_contig10297:1588..17591680789124.6177826-CDS-C-tenellus_contig10297:1588..1759Choristocarpus tenellus KU2346CDSC-tenellus_contig10297 1589..1759 -
1680789124.6305685-CDS-C-tenellus_contig10297:2555..26931680789124.6305685-CDS-C-tenellus_contig10297:2555..2693Choristocarpus tenellus KU2346CDSC-tenellus_contig10297 2556..2693 -
1680789124.6393113-CDS-C-tenellus_contig10297:3016..30671680789124.6393113-CDS-C-tenellus_contig10297:3016..3067Choristocarpus tenellus KU2346CDSC-tenellus_contig10297 3017..3067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10297.1.1prot_C-tenellus_contig10297.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10297 1589..3067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10297.1.1

>prot_C-tenellus_contig10297.1.1 ID=prot_C-tenellus_contig10297.1.1|Name=mRNA_C-tenellus_contig10297.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
MTSDNDGVLHPIVLQLESINLEDDVPRVQPTPSFIDYEIAPQSNLLQYVD
HAGYRTELGAELEAIGELEKVLDIGHMHVNILYAYRSVSRAIPMVSDSND
PNKEALHMNTFQVQIENLG*
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mRNA from alignment at C-tenellus_contig10297:926..3186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10297.1.1 ID=mRNA_C-tenellus_contig10297.1.1|Name=mRNA_C-tenellus_contig10297.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2261bp|location=Sequence derived from alignment at C-tenellus_contig10297:926..3186- (Choristocarpus tenellus KU2346)
GAGGGATAGTACACGCCGAGGCGAAGGAACGACGTGGATGGGGCAGCGTA
TGAGGAAACTTATTACTACCTAATAGACGACTTGGACGAGTTGTAGGGGC
ACTACTCCAAGTAATAAACATGACTTCTGACAACGATGGAGTGTTGCACC
CCATTGTGCTGCAACTGGAGGTGAGCAGGGAGAATTTCCCTAGGAAGTCG
GGGAATATTATTGCCATGAGTTGGAGAGAAAGAGATTTGGACGAATGTGT
CCACGCTGGATTGATGTAGCCTGTGTTACTTAGCCTCTTTCTGCGATTTT
TGGTGAATACAACCCCCAGGTTCATTCTAGCTGAAACCATCCTAGCAGTC
GCTTCTTGTACTCATAGACGCCCAATTCTGGATCCTAGAAATGTACAGCA
TACCTCCCTCCCTCCGTTCTTCGCTCAAAGCTTCCCTTGTCACCTACTCC
TTTTTCCCTTTCCCACTCTCTTACCGTTTCCCTGTCGAAGCAGTCCATCA
ACCTCGAGGATGATGTTCCTCGGGTTCAGCCAACACCCAGCTTCATCGAT
TACGAGATTGCTCCTCAGTCGAATCTCCTTCAGTATGTCGACCATGCCGG
CTACAGGACGGAGCTCGGTGCTGAGTTGGAGGTGAGTGCATAGAAAGGTC
ACCCTGTGTTTGCACTAAACGACTGGATACAAAGACAAAACGAAATTCCT
CCAGAGGGGGTGTTGTGGTTTTGGTCGGATTGGTGATTAGGTTGGGCAAA
TACTTTAAATATGTAGTGTGAGGAAATTGCATTTTATACTCGGACGTTTG
GAGTCGTGAAGGCTGGACCCTTTGTCTGGTACACTCGGCACTGTTCACTC
CTGCCAAATGAACAAGGGGGATAGGGGGGGAAGGGGGAGAGAGTGGGTAA
TCTTGAATCTTGTTCAAATGAAGTTGAAAGTCTTCAGCCTTCAATGCTGT
AAGGATGGTAGTGTATAGGGTGGGGGTAGGCAGGTGAAGAGAAGAATCCA
GGGAGTGGAAGAGGTAATTTGCTTCAGCAAGGGAGTGCACTGAGCATGAA
ACATAAGCTAGAGCTGATGGAGTTGAATTGGTGCAATTATTTACTTATCA
ATTACGCTGCAAGTGCACCCTTCCATCGTTCATCTTCGTCAGTTCCATCT
CATTCATTTTACTTGAACGTACTCTCTGAACAAACAAATTGTGCATCTTC
CAACTGAATCTCACCATCTTAAGCACGAACAGCCGAAAATAACTATTTAC
GCTTTTCACTAGAGATTTTTCCAAGGCGTTCCTGGTGATTTCACACTTCT
TTTCAAGATTTTATCGTATTTTCAGAGTGTACGTCTCATTTTTTTTCCCG
TCACACAACCTGTTACAGCCCTTAACACGTCCTTAACGTCTTGGTCTGTT
GCTTGGACATGTTCTGTGGGTCGGAAGGCAATCGGTGAGCTGGAGAAGGT
GCTGGACATTGGTCACATGCACGTGAATATCCTCTATGCTTACCGAAGCG
TATCGAGAGCGATACCCATGGTCAGCGATAGCAATGATCCCAACAAGGAA
GCTCTCCACATGAACACCTTCCAGGTGCAGATTGAGAATTTGGGCTAGGC
AGGGCAGAGCAATGAAGGGAGGAAGCCGGACCCAAAATTTTCCCGGGGGT
GGGTCGGGGGGTCAGGTAGTAATGGGTAGGGTATCTGTGTGGGTTACATA
CGTTCTGGCCTTCCTGAGAGGTGGGTATTTGGTACTATTTGTTGAATGCG
GACGTAGGACTGACTGGGGCGAAGGTAGCGTGTGGGTGCTTGGAGTTCCT
GTTGTGGTCACTTTCCCCTGGAGAGTGTGTCTCCCCGTCAGAGGGAAATG
CTTACCTAGATTGAACCTCTGACCCTATTTGCAATGTGGAGATTCATATG
CTCAAGAGTAGTGGAGGGACATGGCCACACTTGGGTGTTGGTCTTTTCTT
CTACTTTGGACCTTATAGCTTACCATGAGCGCATTGCAGTACAGGAGCAT
AGTATGGTGAACTTCAAACCCAGATGTGTGTGATTTAGTGGACAGACGAT
ACGGACACCGCTTTCCTTACACAAATTTTGCCCCACGGTATTCAATGCGC
CCACCCCCTGTGGACAAGATGCATTACACCCGAATGCCCATATTACACAG
GAATAAGAATACTGTCGCGTCAGGGATCAACCGTCCTTGTGCTGTTCACG
ACGTTCATGCTCAAGGCTGGTTGTTTTGGGGGTTCAATTCAAGTCTTGCC
ATCTGCCTCAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10297:926..3186-

>mRNA_C-tenellus_contig10297.1.1 ID=mRNA_C-tenellus_contig10297.1.1|Name=mRNA_C-tenellus_contig10297.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig10297:926..3186- (Choristocarpus tenellus KU2346)
ATGACTTCTGACAACGATGGAGTGTTGCACCCCATTGTGCTGCAACTGGA
GTCCATCAACCTCGAGGATGATGTTCCTCGGGTTCAGCCAACACCCAGCT
TCATCGATTACGAGATTGCTCCTCAGTCGAATCTCCTTCAGTATGTCGAC
CATGCCGGCTACAGGACGGAGCTCGGTGCTGAGTTGGAGGCAATCGGTGA
GCTGGAGAAGGTGCTGGACATTGGTCACATGCACGTGAATATCCTCTATG
CTTACCGAAGCGTATCGAGAGCGATACCCATGGTCAGCGATAGCAATGAT
CCCAACAAGGAAGCTCTCCACATGAACACCTTCCAGGTGCAGATTGAGAA
TTTGGGCTAG
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