mRNA_C-tenellus_contig10288.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10288.1.1
Unique NamemRNA_C-tenellus_contig10288.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10288.1.1 vs. uniprot
Match: A0A813ZS71_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813ZS71_9BILA)

HSP 1 Score: 62.4 bits (150), Expect = 5.120e-9
Identity = 36/107 (33.64%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:   28 EYIAKSTMMYNLQLFNVNKKLLHIAL--QVDMYKRITLLISKEDIPGLKHIFAQALQSSCG--KVLDKVAQAMQGTYLARGYESKCHNVSLVVLKIGGPSLLMFFNR 336
            E   K+T + + +L  +N +  +I L  Q+  YKR  +L+S+ DIP +  +    ++S+ G   +++K+ QA+ G+Y  +GY  K  +++++VL+IGGP LL  FN+
Sbjct:  144 ELDEKNTKINSQKLETLNLRRSNITLNNQLSDYKRFKILVSQNDIPRIHVLVKSCIKSNYGINGIIEKIKQAIAGSYKPKGYGQKDIDLAILVLRIGGPRLLYTFNK 250
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BLAST of mRNA_C-tenellus_contig10288.1.1 vs. uniprot
Match: UPI001B8631CE (uncharacterized protein n=1 Tax=Suillus clintonianus TaxID=1904413 RepID=UPI001B8631CE)

HSP 1 Score: 53.9 bits (128), Expect = 5.230e-6
Identity = 28/85 (32.94%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   73 NVNKKLLHIALQVDMYKRITLLISKEDIPGLKHIFAQALQS--SCGKVLDKVAQAMQGTYLARGYESKCHNVSLVVLKIGGPSLL 321
            N ++K ++   Q+D Y R+ + IS+ DIP L+ I   A+ +  S  +V++K+  A++GTY  RGY +   ++++++ ++GG  LL
Sbjct:    2 NDSRKHINSLTQLDDYHRLLMAISENDIPRLQQIINVAMGNGASIREVVNKIEDAIEGTYRPRGYNASDLDIAMLIYRLGGRQLL 86
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BLAST of mRNA_C-tenellus_contig10288.1.1 vs. uniprot
Match: A0A4S4LQ01_9AGAM (Uncharacterized protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LQ01_9AGAM)

HSP 1 Score: 52.4 bits (124), Expect = 1.830e-5
Identity = 32/116 (27.59%), Postives = 67/116 (57.76%), Query Frame = 1 
Query:    1 HIQMVTRSNEYIAKSTMMYNLQLFNVNKKLLHIALQVDMYKRITLLISKEDIPGLKHIFAQALQ--SSCGKVLDKVAQAMQGTYLARG-YESKCHNVSLVVLKIGGPSLLMFFNRA 339
            H   V  S+     +  +  +Q  N+N+K+  +  +++ ++RIT+L+S+ DI GL+ +    L+  +S  KVL+++ +A+ G Y  RG + ++  +V+ +   +GGP LL   +++
Sbjct:  293 HAHTVDLSSRLRKLTLKLSGIQHQNMNRKMSTMRRRINDHQRITILLSRNDIAGLRRLLTVVLRRGTSLQKVLNQLERAIAGIYSPRGHFSNRDLDVAFLAKALGGPRLLYALHKS 408
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10288.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A813ZS71_9BILA5.120e-933.64Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
UPI001B8631CE5.230e-632.94uncharacterized protein n=1 Tax=Suillus clintonian... [more]
A0A4S4LQ01_9AGAM1.830e-527.59Uncharacterized protein n=1 Tax=Bondarzewia mesent... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10288contigC-tenellus_contig10288:5002..5340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog104355.XP_007869151.1
Model size339
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.12e-07
EggNOG OGs2EXNX@1|root,2SZAG@2759|Eukaryota,3AUXS@33154|Opisthokonta,3PHVD@4751|Fungi,3V737@5204|Basidiomycota,226UE@155619|Agaricomycetes,3H53K@355688|Agaricomycetes incertae sedis
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.4958866-UTR-C-tenellus_contig10288:5001..50101680789124.4958866-UTR-C-tenellus_contig10288:5001..5010Choristocarpus tenellus KU2346UTRC-tenellus_contig10288 5002..5010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.5105734-CDS-C-tenellus_contig10288:5010..53401680789124.5105734-CDS-C-tenellus_contig10288:5010..5340Choristocarpus tenellus KU2346CDSC-tenellus_contig10288 5011..5340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10288.1.1prot_C-tenellus_contig10288.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10288 5011..5340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10288.1.1

>prot_C-tenellus_contig10288.1.1 ID=prot_C-tenellus_contig10288.1.1|Name=mRNA_C-tenellus_contig10288.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=110bp
MVTRSNEYIAKSTMMYNLQLFNVNKKLLHIALQVDMYKRITLLISKEDIP
GLKHIFAQALQSSCGKVLDKVAQAMQGTYLARGYESKCHNVSLVVLKIGG
PSLLMFFNRA
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mRNA from alignment at C-tenellus_contig10288:5002..5340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10288.1.1 ID=mRNA_C-tenellus_contig10288.1.1|Name=mRNA_C-tenellus_contig10288.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=339bp|location=Sequence derived from alignment at C-tenellus_contig10288:5002..5340+ (Choristocarpus tenellus KU2346)
CACATCCAGATGGTGACCCGGTCCAATGAATACATCGCCAAGTCAACGAT
GATGTATAACCTGCAATTGTTTAATGTAAACAAGAAGCTGCTGCACATAG
CCCTGCAGGTAGACATGTACAAAAGGATCACCCTCCTTATCTCAAAGGAG
GACATTCCAGGACTGAAGCACATCTTTGCCCAAGCACTGCAAAGTTCTTG
TGGGAAGGTCTTGGACAAGGTGGCGCAGGCAATGCAAGGAACGTACCTTG
CCCGTGGTTATGAATCAAAATGCCACAACGTTTCGTTGGTTGTGCTCAAG
ATCGGAGGACCATCATTGTTAATGTTCTTCAACCGAGCA
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Coding sequence (CDS) from alignment at C-tenellus_contig10288:5002..5340+

>mRNA_C-tenellus_contig10288.1.1 ID=mRNA_C-tenellus_contig10288.1.1|Name=mRNA_C-tenellus_contig10288.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=330bp|location=Sequence derived from alignment at C-tenellus_contig10288:5002..5340+ (Choristocarpus tenellus KU2346)
ATGGTGACCCGGTCCAATGAATACATCGCCAAGTCAACGATGATGTATAA
CCTGCAATTGTTTAATGTAAACAAGAAGCTGCTGCACATAGCCCTGCAGG
TAGACATGTACAAAAGGATCACCCTCCTTATCTCAAAGGAGGACATTCCA
GGACTGAAGCACATCTTTGCCCAAGCACTGCAAAGTTCTTGTGGGAAGGT
CTTGGACAAGGTGGCGCAGGCAATGCAAGGAACGTACCTTGCCCGTGGTT
ATGAATCAAAATGCCACAACGTTTCGTTGGTTGTGCTCAAGATCGGAGGA
CCATCATTGTTAATGTTCTTCAACCGAGCA
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