mRNA_C-tenellus_contig10280.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10280.3.1
Unique NamemRNA_C-tenellus_contig10280.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10280.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10280contigC-tenellus_contig10280:1962..2466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size505
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.3800256-UTR-C-tenellus_contig10280:1961..21091680789124.3800256-UTR-C-tenellus_contig10280:1961..2109Choristocarpus tenellus KU2346UTRC-tenellus_contig10280 1962..2109 -
1680789124.397367-UTR-C-tenellus_contig10280:2463..24661680789124.397367-UTR-C-tenellus_contig10280:2463..2466Choristocarpus tenellus KU2346UTRC-tenellus_contig10280 2464..2466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.3886564-CDS-C-tenellus_contig10280:2109..24631680789124.3886564-CDS-C-tenellus_contig10280:2109..2463Choristocarpus tenellus KU2346CDSC-tenellus_contig10280 2110..2463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10280.3.1prot_C-tenellus_contig10280.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10280 2110..2463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10280.3.1

>prot_C-tenellus_contig10280.3.1 ID=prot_C-tenellus_contig10280.3.1|Name=mRNA_C-tenellus_contig10280.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=118bp
MKVKMPRGSDPQITFTMMLNWVGLVAMMGHVMSEQVLEIAMLDCLDDYQI
TKHYLQHHNKSDRSRAMIQQAAHSRYFSLQREAADRGEPGSALSTQTQQK
VNREGTKVRPVIVQTLG*
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mRNA from alignment at C-tenellus_contig10280:1962..2466-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10280.3.1 ID=mRNA_C-tenellus_contig10280.3.1|Name=mRNA_C-tenellus_contig10280.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=505bp|location=Sequence derived from alignment at C-tenellus_contig10280:1962..2466- (Choristocarpus tenellus KU2346)
GTTATGAAGGTCAAGATGCCTCGGGGATCAGATCCCCAAATCACTTTCAC
GATGATGCTGAACTGGGTGGGCCTGGTGGCGATGATGGGGCATGTGATGT
CCGAGCAGGTCCTAGAAATCGCTATGTTAGACTGTTTGGATGACTACCAG
ATCACCAAACACTATCTCCAGCACCATAACAAAAGTGATCGTTCGAGAGC
TATGATACAACAAGCTGCTCATTCGCGTTACTTCTCACTCCAACGGGAAG
CAGCTGATCGCGGGGAGCCAGGTAGTGCTCTTTCCACCCAGACCCAACAA
AAGGTTAACCGGGAAGGAACAAAGGTACGACCGGTCATCGTACAGACCCT
GGGATGACAGGATCCGGTCCCAGGAGGCTGGCCAGGGCTAAAGAAATATG
CATAATGTGCGGACTGGGAAAACACACAGGTCCTAGCACATATAAAGGAC
TGTGCTACAGCTGCGGGAGCAAATGACACCGGCAAGCTGTTTGTTCTCAG
AGGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10280:1962..2466-

>mRNA_C-tenellus_contig10280.3.1 ID=mRNA_C-tenellus_contig10280.3.1|Name=mRNA_C-tenellus_contig10280.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=354bp|location=Sequence derived from alignment at C-tenellus_contig10280:1962..2466- (Choristocarpus tenellus KU2346)
ATGAAGGTCAAGATGCCTCGGGGATCAGATCCCCAAATCACTTTCACGAT
GATGCTGAACTGGGTGGGCCTGGTGGCGATGATGGGGCATGTGATGTCCG
AGCAGGTCCTAGAAATCGCTATGTTAGACTGTTTGGATGACTACCAGATC
ACCAAACACTATCTCCAGCACCATAACAAAAGTGATCGTTCGAGAGCTAT
GATACAACAAGCTGCTCATTCGCGTTACTTCTCACTCCAACGGGAAGCAG
CTGATCGCGGGGAGCCAGGTAGTGCTCTTTCCACCCAGACCCAACAAAAG
GTTAACCGGGAAGGAACAAAGGTACGACCGGTCATCGTACAGACCCTGGG
ATGA
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