mRNA_C-tenellus_contig10280.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10280.1.1
Unique NamemRNA_C-tenellus_contig10280.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10280.1.1 vs. uniprot
Match: UPI00029F68C9 (hypothetical protein n=2 Tax=Agaricus bisporus var. bisporus (strain H97 / ATCC MYA-4626 / FGSC 10389) TaxID=936046 RepID=UPI00029F68C9)

HSP 1 Score: 50.8 bits (120), Expect = 1.220e-6
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    7 LWGEAYNHSVYILNRSSTVANKGTSPYSALYGEVGSLASVPAFGIPGYYKSIPGHKLGSRGKQ 195
            LW EA  H V+++NR+ST A +G +P+ ALYG    L +V  +G   +     G KLG+R K+
Sbjct:   11 LWAEAAAHIVWLMNRTSTKAVQGMTPFEALYGHKPRLGNVREWGDEVWVHQAGGDKLGARAKK 73
[Close]
BLAST of mRNA_C-tenellus_contig10280.1.1 vs. uniprot
Match: D1MBJ6_AGABI (Polyprotein n=1 Tax=Agaricus bisporus var. bisporus TaxID=192523 RepID=D1MBJ6_AGABI)

HSP 1 Score: 51.2 bits (121), Expect = 7.700e-6
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    7 LWGEAYNHSVYILNRSSTVANKGTSPYSALYGEVGSLASVPAFGIPGYYKSIPGHKLGSRGKQ 195
            LW EA  H V+++NR+ST A +G +P+ ALYG    L +V  +G   +     G KLG+R K+
Sbjct:  670 LWAEAAAHIVWLMNRTSTKAVQGMTPFEALYGRKPRLGNVQEWGDEVWVHQAGGDKLGARAKK 732
[Close]
BLAST of mRNA_C-tenellus_contig10280.1.1 vs. uniprot
Match: A0A5N6NWD4_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NWD4_9ASTR)

HSP 1 Score: 49.3 bits (116), Expect = 3.590e-5
Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:    4 WLWGEAYNHSVYILNRSSTVANKGTSPYSALYGEVGSLASVPAFGIPGYYKSIPGHKL 177
            W+WGE   H+VYILNR ST A +G +PY  L G    L  +  FG   +   +P  KL
Sbjct:  240 WMWGEGVRHAVYILNRVSTKAIEGKTPYEVLKGRKPRLEHLKVFGCTSHVM-VPSVKL 296
[Close]
BLAST of mRNA_C-tenellus_contig10280.1.1 vs. uniprot
Match: A0A409WYT1_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409WYT1_9AGAR)

HSP 1 Score: 49.3 bits (116), Expect = 3.700e-5
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    7 LWGEAYNHSVYILNRSSTVANKGTSPYSALYGEVGSLASVPAFGIPGYYKSIPGHKLGSRGKQ 195
            LWGEA  H V+++NR+ST A  G +PY A +G+   L  +  +G   + +   G+KLG R K+
Sbjct:  805 LWGEAARHVVWLMNRTSTKAVDGMTPYEAAFGKKPDLRGLREWGEKVWVRIEGGNKLGGRVKE 867
[Close]
BLAST of mRNA_C-tenellus_contig10280.1.1 vs. uniprot
Match: A0A371HZL0_MUCPR (Uncharacterized protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HZL0_MUCPR)

HSP 1 Score: 47.0 bits (110), Expect = 5.910e-5
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 MWLWGEAYNHSVYILNRSSTVANKGTSPYSALYGEVGSLASVPAF 135
            ++LWGE    + YI+NR ST+ANKG +PY  L+G + S   + +F
Sbjct:   35 IFLWGECILATTYIINRISTIANKGVTPYEVLFGTLASYDHLESF 79
[Close]
BLAST of mRNA_C-tenellus_contig10280.1.1 vs. uniprot
Match: UPI001C68D9E7 (uncharacterized protein LOC111883520 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C68D9E7)

HSP 1 Score: 48.5 bits (114), Expect = 6.910e-5
Identity = 27/65 (41.54%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:    7 LWGEAYNHSVYILNRSSTVANKGTSPYSALYGEVGSLASVPAFGIPGYYKSIPGH--KLGSRGKQ 195
            LWGEA +H+VY+LNR ST A  GT+PY    G    +  +  FG   + K    H  KL  R K+
Sbjct:  671 LWGEAVSHAVYVLNRLSTKALDGTTPYEIWTGRKPHVGHLRVFGCVAHMKIAKNHLKKLEDRSKK 735
[Close]
BLAST of mRNA_C-tenellus_contig10280.1.1 vs. uniprot
Match: A0A409WYQ1_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409WYQ1_9AGAR)

HSP 1 Score: 48.5 bits (114), Expect = 6.920e-5
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    7 LWGEAYNHSVYILNRSSTVANKGTSPYSALYGEVGSLASVPAFGIPGYYKSIPGHKLGSRGKQ 195
            LWGE   H V+++NR+ST A  G +PY A +G+   L  +  +G   + +   G+KLG R K+
Sbjct:  787 LWGEGVRHVVWLMNRTSTKALDGMTPYEAAFGKKPDLRGLREWGEKVWVRVEAGNKLGGRVKE 849
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10280.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI00029F68C91.220e-641.27hypothetical protein n=2 Tax=Agaricus bisporus var... [more]
D1MBJ6_AGABI7.700e-641.27Polyprotein n=1 Tax=Agaricus bisporus var. bisporu... [more]
A0A5N6NWD4_9ASTR3.590e-543.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A409WYT1_9AGAR3.700e-539.68Uncharacterized protein n=1 Tax=Gymnopilus dilepis... [more]
A0A371HZL0_MUCPR5.910e-544.44Uncharacterized protein (Fragment) n=1 Tax=Mucuna ... [more]
UPI001C68D9E76.910e-541.54uncharacterized protein LOC111883520 n=1 Tax=Lactu... [more]
A0A409WYQ1_9AGAR6.920e-538.10Uncharacterized protein n=1 Tax=Gymnopilus dilepis... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10280contigC-tenellus_contig10280:614..808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3712.Bo1g005190.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size195
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000261
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta
DescriptionMitochondrial protein
Cds size195
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.4296134-CDS-C-tenellus_contig10280:613..8081680789124.4296134-CDS-C-tenellus_contig10280:613..808Choristocarpus tenellus KU2346CDSC-tenellus_contig10280 614..808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10280.1.1prot_C-tenellus_contig10280.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10280 614..808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10280.1.1

>prot_C-tenellus_contig10280.1.1 ID=prot_C-tenellus_contig10280.1.1|Name=mRNA_C-tenellus_contig10280.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=65bp
MWLWGEAYNHSVYILNRSSTVANKGTSPYSALYGEVGSLASVPAFGIPGY
YKSIPGHKLGSRGKQ
back to top

mRNA from alignment at C-tenellus_contig10280:614..808-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10280.1.1 ID=mRNA_C-tenellus_contig10280.1.1|Name=mRNA_C-tenellus_contig10280.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=195bp|location=Sequence derived from alignment at C-tenellus_contig10280:614..808- (Choristocarpus tenellus KU2346)
ATGTGGTTATGGGGAGAAGCATACAATCACTCAGTCTACATCCTCAACAG
AAGCTCAACTGTTGCTAATAAGGGGACCTCCCCCTATTCTGCACTCTATG
GGGAAGTTGGATCACTAGCTAGTGTCCCAGCTTTTGGCATCCCTGGATAC
TACAAGTCTATTCCTGGACACAAGCTTGGGAGCCGAGGGAAGCAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10280:614..808-

>mRNA_C-tenellus_contig10280.1.1 ID=mRNA_C-tenellus_contig10280.1.1|Name=mRNA_C-tenellus_contig10280.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=195bp|location=Sequence derived from alignment at C-tenellus_contig10280:614..808- (Choristocarpus tenellus KU2346)
ATGTGGTTATGGGGAGAAGCATACAATCACTCAGTCTACATCCTCAACAG
AAGCTCAACTGTTGCTAATAAGGGGACCTCCCCCTATTCTGCACTCTATG
GGGAAGTTGGATCACTAGCTAGTGTCCCAGCTTTTGGCATCCCTGGATAC
TACAAGTCTATTCCTGGACACAAGCTTGGGAGCCGAGGGAAGCAG
back to top