mRNA_C-tenellus_contig10276.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10276.1.1
Unique NamemRNA_C-tenellus_contig10276.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Match: D7G8Q3_ECTSI (Mitochondrial ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q3_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 3.240e-105
Identity = 150/262 (57.25%), Postives = 198/262 (75.57%), Query Frame = 1
Query:    1 WSIKDPRPKRPRTAKAHREEYLRRRSAAFLEEDKKAKELGLDWVIKSSIVLERLPVIMPEFTDWQKDMWELQAQQSFYGREYPPELGIMDNDVPLLTMDQLMEQSNIPVAPRRTPADEEDDRTSLNRALEHRLILIVKEGAESPWHLPESAWKAGETIRQAAERTARQLLRRTAIVFGQPDNVAQLHFVGNCPAGWLWRTLGKDERNRCGHYGEKVFFNRVQLITGKPDL-RKTSTQFLWVTKHEIGEYLGSDAGTYFSHMI 783
            ++IKD RP RPR AK  R++YL  R  AF  E +KA  LGLDW I+S+++LERLPVI+ E+TDWQ+D W+LQ +Q+ YG ++P E+G   +D   LTM+Q++EQS +P+APRRTPADE +DRT+L+RAL+ RL+LIVK  +   W LPESAW+ GETIRQ AERTA+QLL ++A   GQ D+VAQLHFVGNCPAGW WRT  +++  +   +G+KVF NRVQLI G+P + ++ + + LWVTKHEIGEYLG   G Y  H+I
Sbjct:   47 FTIKDRRPPRPRVAKQKRKQYLAERKDAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTADEEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI 308          
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Match: A0A835YXA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXA6_9STRA)

HSP 1 Score: 166 bits (420), Expect = 7.680e-47
Identity = 100/272 (36.76%), Postives = 146/272 (53.68%), Query Frame = 1
Query:   10 KDPRPKRPRTAKAHREEYLRRRSAAFLEEDKKAKELGLDWVIKSSIVLERLPVIMPEFTDWQKDMWELQAQQSFY-GREYPPELGIM--DNDVPLLTMDQLMEQSNIPVAPRRTPADEEDDRTSLNRALEHRLILIVKEGAESPWHLPESAWKAG----------ETIRQAAERTARQLLRRTAIVFGQPDNVAQLHF-VGNCPAGWLWRTLGKDERNRCGHYGEKVFFNRVQLITGKPDLRKTSTQFLWVTKHEIGEYLGSDAGTYFSHMI 783
            K  RPKRPR    +RE +L  RS    + ++  +  GLDW   ++++LERLPV++PE  DW+    +  ++  +  GR+YP EL I   D D P  +  +  E   IP+APR T AD   DRT+L+RAL+ R+ L+ +     PW    +A + G          ET+R AAER     LR        PD     ++ VGN PAG  WR  G++ER   G +GEKVF  R Q++ G+P   +   Q +WV K E+ EY G++ G Y+  ++
Sbjct:    6 KQGRPKRPRIRLTNRETWLGGRSFEMKKAEEAREASGLDWEYHAAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPAPSFREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLLERASDAEPWRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALR--------PDVPGFKYWHVGNGPAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAFARRGVQRVWVAKEELAEYFGAERGQYYVKLL 269          
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Match: UPI001B88B56C (39S ribosomal protein L46, mitochondrial-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B56C)

HSP 1 Score: 102 bits (253), Expect = 3.470e-22
Identity = 81/236 (34.32%), Postives = 105/236 (44.49%), Query Frame = 1
Query:  118 GLDWVIKSSIVLERLPVIMPEFTDWQKDMWELQAQQSF-YGREYPPELGIMDN-----------------DVPLLTMDQL-----MEQSNIPVAPRRTPADEEDDRTSLNRALEHRLILIVKE--GAESPWHLPESAWKAGETIRQAAERTARQLLRRTAIVFGQPDNVAQLHFVGNCPAGWLWRTLGKDERNRCGHYGEKVFFNRVQLITGKPDL-RKTSTQFLWVTKHEIGEYL 747
            G  W + S++ LER PVI  E T+ ++ M +L  +    Y      EL   ++                 D   LT   L      E  N   A R T AD+ DDRTS+ R L+ +LILIVK+  G +S W  P+  WK GE++RQ AER  +             D      F GN P G     L K +  R    G K+FF R     G  DL  K  + FLWVTK E+ EYL
Sbjct:   34 GRQWQLASAVCLERHPVITSEKTELEQKMSKLMERMELEYSLLSDHELRHKEDLLLAQKRKQEDYEETEIDASRLTALDLEDKWEAELKNFTPASRNTDADKSDDRTSVQRKLDRKLILIVKQQLGDQSHWVFPQGLWKDGESMRQTAERVLQDC----------SDGKLDARFEGNAPCG-----LHKYKFKRESENGVKIFFFRASYAKGNIDLTNKRVSDFLWVTKDELTEYL 254          
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Match: A0A7S2F346_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F346_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.690e-22
Identity = 60/201 (29.85%), Postives = 105/201 (52.24%), Query Frame = 1
Query:   97 DKKAKELGLDWVIKSSIVLERLPVIMPEFTDWQKDMWELQAQQSFYG-REYPPELGI---MDNDVPLLTMDQLMEQSNIPV-----APRRTPADEEDDRTSLNRALEHRLILIVKEGAESPWHLPESAWKAGETIRQAAERTARQLLRRTAIVFGQPDNVAQLHFVGNCPAGWLWRTLGKDERNRCGHYGEKVFFNRVQLI 672
            +++A ++ L W++KS+ V+ER P+++P+  DW+++  E+QA   +Y  R+YPP +G+    + D   +  DQ  +     V     APR T ADE++D  S+ RAL   L L+VK+ +   W  P++  K  E + +AA+R   +       +F         HF    P G++     +  + + G YG K+FF   Q++
Sbjct:   61 ERRAADMNLGWLLKSTAVVERPPIVLPDMPDWKREFLEIQASLEYYKLRDYPPGIGVPHPSEPDEDDMVSDQNEDSDGEQVMKYEPAPRVTQADEDNDLRSMERALPESLYLVVKQKSTGTWAFPQTTVKEDEMLGKAAQRAIDETCSELPELF---------HFHRQ-PFGFIPIAFDEPTQQQLGAYGAKLFFYNAQVV 251          
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Match: UPI0006D92279 (39S ribosomal protein L46, mitochondrial n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D92279)

HSP 1 Score: 99.0 bits (245), Expect = 8.110e-22
Identity = 62/142 (43.66%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  328 APRRTPADEEDDRTSLNRALEHRLILIVKE--GAESPWHLPESAWKAGETIRQAAERTARQLLRRTAIVFGQPDNVAQLHFVGNCPAGWLWRTLGKDERNRCGHYGEKVFFNRVQLITGKPDLRKTSTQFLWVTKHEIGEYL 747
            A R T AD++DDRTSLNR L  RL+L+VKE  G E  W LP+  W++GET+RQ AER        TA      DN  +  F GN P G       KD R      G KV F + +L+ G     K   Q LWV+K E+ EYL
Sbjct:   41 AERITEADKKDDRTSLNRKLRERLVLLVKEKLGDEEVWLLPQVEWRSGETMRQTAERAL-----ATA-----SDNGVEAVFFGNVPCGVYKYKYPKDMRTDSSQ-GAKVVFFKARLLAGDLTKSKAKGQHLWVSKSELKEYL 171          
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Match: A0A2P6VD62_9CHLO (Serine threonine-kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VD62_9CHLO)

HSP 1 Score: 102 bits (254), Expect = 6.430e-21
Identity = 75/205 (36.59%), Postives = 106/205 (51.71%), Query Frame = 1
Query:  142 SIVLERLPVIMPEFTDWQKDMWELQ-AQQSFYGREYPPELGIMDNDVPLLTMDQLMEQSNIPVAPRRTPADEEDDRTSLNRALEHRLILIVKEGAESPWHLPESAWKAGETIRQAAERTARQLLRRTAIVFGQPDNVAQLHFVGNCPAGWLWRTLGKDERNRCGHYGEKVFFNRVQLITGKPDLRKTS--TQFLWVTKHEIGEYL 747
            ++V ERLPV++PE  +W+++ +E Q      Y +E P E      D+    M +    S  P APR T AD  +DR SL R L+ RL ++V++  +  W LP+     GET+RQ AER     +   A+         + +FVGN PAG     LG             +FF+R QLI G P LR  S  ++ +WVTK E+GEYL
Sbjct:   52 AVVFERLPVVVPEDPEWEREYFEWQDGLAGKYRKELPREF----TDLKDSEMKEDAGASYEP-APRVTAADHANDRRSLKRRLDQRLFMLVRQ--KGGWTLPQQENAEGETMRQTAERALADAVELEAV---------RPYFVGNAPAGHA--PLGD---------AGTLFFHRCQLIQGVPALRGGSGYSEHVWVTKEELGEYL 229          
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Match: UPI0018F78750 (39S ribosomal protein L46, mitochondrial isoform X1 n=2 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F78750)

HSP 1 Score: 99.0 bits (245), Expect = 7.690e-21
Identity = 70/193 (36.27%), Postives = 97/193 (50.26%), Query Frame = 1
Query:  181 FTDWQKDMWELQAQQSFYGREYPPELGIMDNDVPLLTMDQLMEQS--NIPVAPRRTPADEEDDRTSLNRALEHRLILIVKE--GAESPWHLPESAWKAGETIRQAAERTARQLLRRTAIVFGQPDNVAQLHFVGNCPAGWLWRTLGKDERNRCGHYGEKVFFNRVQLITGKPDLRKTSTQFLWVTKHEIGEYL 747
            F D +K  W    Q   Y  E   ++G   + V    ++ + EQ       A R   AD++DDR++LNR L+ +L L+VKE  G E  W LP+S WK GET+RQ AER    L  R         N  Q  F+GN PAG+      K  R    + G KVFF +  L+ G  + R+    ++WVTK E+ +YL
Sbjct:   98 FEDEEKIRWR---QAEDYDSEEEEDVG--QDIVTAQDLEDMWEQKLRQFRAADREQEADKKDDRSTLNRRLDEKLTLLVKEKVGDEDIWLLPQSEWKPGETMRQTAERALSALSGR---------NELQTAFLGNAPAGFYKYKYPKAMRTS-DNVGAKVFFFKAWLVNGDLEARRKG-DYVWVTKSELKDYL 274          
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Match: A0A401PD20_SCYTO (Uncharacterized protein n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PD20_SCYTO)

HSP 1 Score: 97.4 bits (241), Expect = 4.540e-20
Identity = 70/193 (36.27%), Postives = 95/193 (49.22%), Query Frame = 1
Query:  181 FTDWQKDMWELQAQQSFYGREYPPELGIMDNDVPLLTMDQLMEQS--NIPVAPRRTPADEEDDRTSLNRALEHRLILIVKE--GAESPWHLPESAWKAGETIRQAAERTARQLLRRTAIVFGQPDNVAQLHFVGNCPAGWLWRTLGKDERNRCGHYGEKVFFNRVQLITGKPDLRKTSTQFLWVTKHEIGEYL 747
            F D +K  W    Q   Y  E   ++G   + V    ++ + EQ       A R   AD++DDR++LNR L+ +L L+VKE  G E  W LP+S WK GET+RQ AERT   L            N  Q  F+GN PAG+      K  R      G KVFF +  L+ G    R+    ++WVTK E+ +YL
Sbjct:  129 FEDEEKIRWR---QAEDYDSEEEEDVG--QDIVTAQDLEDMWEQKLRQFRAADREQEADKKDDRSTLNRRLDEKLTLLVKEKVGDEEIWLLPQSEWKPGETMRQTAERTLSAL----------SGNELQAAFLGNAPAGFYKYKYPKAMRTS-DTLGAKVFFFKALLVNGDLKARRKG-DYVWVTKSELKDYL 304          
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Match: A0A401S5P1_CHIPU (Uncharacterized protein n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401S5P1_CHIPU)

HSP 1 Score: 95.1 bits (235), Expect = 5.110e-20
Identity = 62/144 (43.06%), Postives = 82/144 (56.94%), Query Frame = 1
Query:  328 APRRTPADEEDDRTSLNRALEHRLILIVKE--GAESPWHLPESAWKAGETIRQAAERTARQLLRRTAIVFGQPDNVAQLH--FVGNCPAGWLWRTLGKDERNRCGHYGEKVFFNRVQLITGKPDLRKTSTQFLWVTKHEIGEYL 747
            A R   ADE++DR++LNR L+ +LIL+VKE  G E  W LP+S WK GET+RQ AER         + V G      +LH  F+GN PAG+      KD RN     G KVFF +  L+ G    R+    ++WVTK E+ +YL
Sbjct:   71 AERIQEADEKNDRSTLNRQLDKKLILLVKEKVGDEEIWLLPQSEWKPGETMRQTAERAL-------STVSGN-----ELHAVFLGNAPAGFYKYKYPKDLRNS-SIVGAKVFFFKALLMNGDLKTRRKG-DYVWVTKSELKDYL 200          
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Match: A0A3R7GV70_9STRA (Nudix hydrolase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GV70_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.130e-20
Identity = 76/241 (31.54%), Postives = 113/241 (46.89%), Query Frame = 1
Query:  112 ELGLDWVIKSSIVLERLPVIMPEFTDWQKDMWELQ----------AQQSFYGREYPPELGIMDNDVPLLTMDQLMEQ---SNIPVAPRRTPADEEDDRTSLNRALEHRLILIVK---EGAESPWHLPESAWKAGETIRQAAERTARQLLRRTAIVFGQPDNVAQLHFVGNCPAGWLWRTLGKDERNRCGHYGEKVFFNRVQLITGKPDLRK-TSTQFLWVTKHEIGEYLGSDAGTYFSHMI 783
            E G  W I S+ VLERLPV+ P+  DW+ D   +Q           ++ F+  E P    IM  + P        E+   +   +APR T  D  ++R SLNRAL+ R+ L+VK   + A+  W  P+   +  E +R AA       LR+     G    V+    VG  P G++      D        G KVFF + QL+ G  +L    ++ +LWVT+ E+ EYL S+   Y + M+
Sbjct:  345 EDGKKWRILSAAVLERLPVVQPDLKDWEMDFEVMQHEKALREDQRLEEDFWFME-PGTTHIMPEEAPWPNAKDDPEEIVGAGFHLAPRETEDDATNNRKSLNRALKGRMFLLVKNDQKDAKFQWFFPQGEKQEEEKMRDAA-------LRQVTETVGAEVEVSP---VGFAPIGYVKYLHDNDSE----FDGTKVFFYKSQLVYGDVELNAGKASDYLWVTRDELAEYLDSEIADYVTKMV 570          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10276.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Q3_ECTSI3.240e-10557.25Mitochondrial ribosomal protein L46 isoform 2 n=2 ... [more]
A0A835YXA6_9STRA7.680e-4736.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001B88B56C3.470e-2234.3239S ribosomal protein L46, mitochondrial-like n=1 ... [more]
A0A7S2F346_9STRA7.690e-2229.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI0006D922798.110e-2243.6639S ribosomal protein L46, mitochondrial n=1 Tax=L... [more]
A0A2P6VD62_9CHLO6.430e-2136.59Serine threonine-kinase n=1 Tax=Micractinium condu... [more]
UPI0018F787507.690e-2136.2739S ribosomal protein L46, mitochondrial isoform X... [more]
A0A401PD20_SCYTO4.540e-2036.27Uncharacterized protein n=1 Tax=Scyliorhinus toraz... [more]
A0A401S5P1_CHIPU5.110e-2043.06Uncharacterized protein n=1 Tax=Chiloscyllium punc... [more]
A0A3R7GV70_9STRA7.130e-2031.54Nudix hydrolase domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10276contigC-tenellus_contig10276:724..3747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G8Q3
Preferred nameMRPL46
PFAMsMRP-L46,NUDIX
Model size786
Max annot lvl2759|Eukaryota
KEGG rclassRC02416
KEGG koko:K02519,ko:K05607,ko:K08860,ko:K17427
KEGG ReactionR02085
KEGG Pathwayko00280,ko01100,ko04137,ko04140,ko04141,ko04210,ko04214,ko04932,ko05010,ko05160,ko05162,ko05164,ko05168,ko05169,map00280,map01100,map04137,map04140,map04141,map04210,map04214,map04932,map05010,map05160,map05162,map05164,map05168,map05169
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons5
Evalue5.32e-106
EggNOG OGsKOG4548@1|root,KOG4548@2759|Eukaryota
Ec32 ortholog description39S ribosomal protein L46, mitochondrial
Ec32 orthologEc-22_002600.1
EC2.7.11.1,4.2.1.18
Descriptionmitochondrial translation
Cds size786
COG categoryS
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko03012,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.0973527-CDS-C-tenellus_contig10276:723..8691680789124.0973527-CDS-C-tenellus_contig10276:723..869Choristocarpus tenellus KU2346CDSC-tenellus_contig10276 724..869 +
1680789124.113483-CDS-C-tenellus_contig10276:956..11481680789124.113483-CDS-C-tenellus_contig10276:956..1148Choristocarpus tenellus KU2346CDSC-tenellus_contig10276 957..1148 +
1680789124.12463-CDS-C-tenellus_contig10276:2036..21571680789124.12463-CDS-C-tenellus_contig10276:2036..2157Choristocarpus tenellus KU2346CDSC-tenellus_contig10276 2037..2157 +
1680789124.135507-CDS-C-tenellus_contig10276:2382..25681680789124.135507-CDS-C-tenellus_contig10276:2382..2568Choristocarpus tenellus KU2346CDSC-tenellus_contig10276 2383..2568 +
1680789124.1436672-CDS-C-tenellus_contig10276:3606..37471680789124.1436672-CDS-C-tenellus_contig10276:3606..3747Choristocarpus tenellus KU2346CDSC-tenellus_contig10276 3607..3747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10276.1.1prot_C-tenellus_contig10276.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10276 724..3747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10276.1.1

>prot_C-tenellus_contig10276.1.1 ID=prot_C-tenellus_contig10276.1.1|Name=mRNA_C-tenellus_contig10276.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=262bp
WSIKDPRPKRPRTAKAHREEYLRRRSAAFLEEDKKAKELGLDWVIKSSIV
LERLPVIMPEFTDWQKDMWELQAQQSFYGREYPPELGIMDNDVPLLTMDQ
LMEQSNIPVAPRRTPADEEDDRTSLNRALEHRLILIVKEGAESPWHLPES
AWKAGETIRQAAERTARQLLRRTAIVFGQPDNVAQLHFVGNCPAGWLWRT
LGKDERNRCGHYGEKVFFNRVQLITGKPDLRKTSTQFLWVTKHEIGEYLG
SDAGTYFSHMI*
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mRNA from alignment at C-tenellus_contig10276:724..3747+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10276.1.1 ID=mRNA_C-tenellus_contig10276.1.1|Name=mRNA_C-tenellus_contig10276.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3024bp|location=Sequence derived from alignment at C-tenellus_contig10276:724..3747+ (Choristocarpus tenellus KU2346)
TGGAGTATAAAGGACCCCCGGCCAAAGCGCCCTCGGACTGCTAAAGCTCA TAGAGAGGAGTATCTTCGACGCCGTAGTGCCGCTTTCCTGGAGGAAGATA AGAAAGCGAAGGAACTTGGGTTAGATTGGGTGATCAAGAGCTCCATGTAA GTGTCAAGGCCAACTACCCTGCCACTTCCTCAACCCCCATATATGTCGTT CGGTAAATTGACACGAACCGTACCCCCCTTTAGAGTGCTGGAACGACTTC CGGTAATTATGCCAGAATTCACAGACTGGCAAAAAGACATGTGGGAGCTG CAGGCACAACAAAGCTTTTATGGACGAGAATATCCGCCCGAGCTTGGCAT CATGGACAATGACGTCCCTTTGTTGACTATGGATCAGCTAATGGAGCAAA GTAATATTCCCGTGGCTCCTCGAAGGTGAATTTTTCTATTTGCAAAAGAT GTTGCTCCTAATCGAGCGGCTATATTGCGCACATGTCGGAGTATTGCTGA TTTAAAGCCTTTTCTCGAAGATTTGGTGATCAGCTTTTAATGAACCGATA TATTTTATCTGTGTAATCTTAGAGAAATTAGAGTAGAATATTGAAGTCCA ATCCCACCTGATAAGATGTTGGTACAAGTCAAAGCAGCCCTGGAAAGATG CTACAATCGAAGTGTTGACCGCCCCATGACTTGTGTCATATTTGTAGACT CACCCTGAACCCCTGTGAAAAACGGGCTATGTAAACAGCTGTAGCGTCAT CATTGACACTAGAGTGTGGATTTGTTTTCCGAATCAAAAGGGTGTATTCT GTCTCTTGTTTCATATCCCCGGGGGAGGATTCGGCTGTCTTCTTGTAACT ATTGCTCGTCTCTCGTTCATGTCACCCACACACCTTTATTCGTGAGGTAA GAGTTCGTTTTTTTGTTGTATTTTTCCAATATGTGCACTCAATGTGGCAA TTTGCACCTGAAATATTTGCTGTATGTATGATATTTTTTGCTCCAGTTCA AGTTTGCTGCATGCAACCCCGCTCGCTGAATGCCTGGTGGCCGAGATGTA GATCTTTATGTAGCAATAAAGTTCTAACAGTCTGTACCAAATCTGATGAG TGTTCTTACCCTATGATGATAAACTTCTACATTGTGGAACAACCATTTCA AAGTTGTGGATGAAGTGGTGTTTGCCAAGATACCTCGTATTTGACAAAGC AATAGCTCTCTTTTGGAACAAGAATTTCAACCTTAACACACTACACCCTT CACTGAAAACAATGATTCGAAAGACTCACCATGTGCATTCATCAATGTAT ATTTTTGGTGCAGAACACCTGCAGATGAAGAAGATGATCGAACATCACTA AACCGGGCTTTAGAGCACCGTTTGATTCTGATTGTGAAAGAGGGCGCAGA ATCCCCATGGCACCTACCAGAGAGTGCTTGGAAGGTGACATACCATTGCT TGTTATTGTTTTTTTGAAAAGAGAGTTTGGGGCGAATTTTACGGCATCTG CTGTTGATAAAATCTCTTTTTTTGCACTGCAGCATACGTTTCACTATTTT ATTGAAGGTAGAATGAGATGTTGCTGTGTTTGCCCTAGATGGGGATTGCT TCTGTCATGCAATTCTTGGAGTGATAAGAGATTGCACACAATTCTATGCC CCTGGACAGGCAGGAGAGACTATTCGCCAGGCAGCAGAGAGAACTGCCCG TCAACTGCTACGCAGGACAGCCATTGTATTCGGTCAACCTGATAATGTTG CCCAGCTTCATTTTGTGGGAAATTGTCCTGCAGGTTGGCTGTGGCGCACT TTGGGCAAGGATGAAAGAAACCGGTGTGGGCATTATGGAGAAAAGGTGAG GACTGTTCCAGTTTCACCTCACCAGGTACAGAGAACAATGAAACGTGTAT AACCTCCCTTCAGATACTGTAGTTGCTCTGCAACTATCTTGTTGTCTGGA GCTCATGATATATTTGTCGAAACAATCACTTGCTTATAGAATCACACCCA CAACATGTATGGGAACTTTTAATTTAGTAAGGTTAGACAGCTTCAAGAGC TTTGATGAAGTGTCCAGTCCTAGTGGGTAGTGGACACTACCATGGTATTC AATGTGAGCTATATTTTCCGAGGCTATTGACACAGATGCCTGGCAGGGTG AGGGTAATTTTAAATTTTGACAAGCGGTACCTCAATAGAGTACGTAAATC TATTAGGGTTTGTGTTCAAGAGCAGTGTTGTCTCCTCTTTGCTAGGTTTG AAACCCCACTTCTTGTGAGGACTATTTTGTGATGTATGGGGAAAGAAAAA AAACATTTTGAAGTTATACACACTTCAGTTATAAAAATTATAGGCCTATG CCTGCTGTTTCTCCAGACCAGCTGTACTGACAAGAAATAATATCAACTCG CACAGATGGCATGTACTCCAGTTTAATTTGTTTGTTCCTTGACAGCTTGC TTCGGTTACTTCTATTGTCTCAGAAATTCCCTTAAAGAGCACTTAGTGAT GGATGTTTGAAAGCAGGTAAATTTTGTATGGATTGAGGACTTGAAAGTGT ATGTAGTGGAACATGTTCAAGGCCCATCTACCGCCCATAAAAGCCATTAT TTTACCAGGTACAAAGTTCACGTTGACAATTGTTGTACCGAGTTTTCACC TGAGTCAACAAGTGTGATGTGCTTTCCGGATTTTCCTGACCCCAAGGCAA GCACAATAAATGTGTACACAGCACTTCTCTCTTGTGGATTGATTTCGTAT TTGCATGTATTGAATGTCCCACGGCAATGTCTACATCCTTTTATCTACCT GTCAGTCCAATGCATGATCTTTAACTGTATCATGGTGCACCCATTTTTTC CCCGATGGACACTGATTAATTGCCCATGTGCAGGTGTTCTTCAACCGTGT TCAGCTTATAACTGGCAAACCCGACCTCAGGAAGACTTCGACGCAGTTTC TTTGGGTGACAAAGCATGAAATTGGGGAATATTTGGGTAGCGATGCTGGG ACATACTTCTCACACATGATTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10276:724..3747+

>mRNA_C-tenellus_contig10276.1.1 ID=mRNA_C-tenellus_contig10276.1.1|Name=mRNA_C-tenellus_contig10276.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=786bp|location=Sequence derived from alignment at C-tenellus_contig10276:724..3747+ (Choristocarpus tenellus KU2346)
TGGAGTATAAAGGACCCCCGGCCAAAGCGCCCTCGGACTGCTAAAGCTCA
TAGAGAGGAGTATCTTCGACGCCGTAGTGCCGCTTTCCTGGAGGAAGATA
AGAAAGCGAAGGAACTTGGGTTAGATTGGGTGATCAAGAGCTCCATAGTG
CTGGAACGACTTCCGGTAATTATGCCAGAATTCACAGACTGGCAAAAAGA
CATGTGGGAGCTGCAGGCACAACAAAGCTTTTATGGACGAGAATATCCGC
CCGAGCTTGGCATCATGGACAATGACGTCCCTTTGTTGACTATGGATCAG
CTAATGGAGCAAAGTAATATTCCCGTGGCTCCTCGAAGAACACCTGCAGA
TGAAGAAGATGATCGAACATCACTAAACCGGGCTTTAGAGCACCGTTTGA
TTCTGATTGTGAAAGAGGGCGCAGAATCCCCATGGCACCTACCAGAGAGT
GCTTGGAAGGCAGGAGAGACTATTCGCCAGGCAGCAGAGAGAACTGCCCG
TCAACTGCTACGCAGGACAGCCATTGTATTCGGTCAACCTGATAATGTTG
CCCAGCTTCATTTTGTGGGAAATTGTCCTGCAGGTTGGCTGTGGCGCACT
TTGGGCAAGGATGAAAGAAACCGGTGTGGGCATTATGGAGAAAAGGTGTT
CTTCAACCGTGTTCAGCTTATAACTGGCAAACCCGACCTCAGGAAGACTT
CGACGCAGTTTCTTTGGGTGACAAAGCATGAAATTGGGGAATATTTGGGT
AGCGATGCTGGGACATACTTCTCACACATGATTTAG
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