mRNA_C-tenellus_contig10271.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10271.1.1
Unique NamemRNA_C-tenellus_contig10271.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10271.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10271contigC-tenellus_contig10271:1803..4092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size878
Hectar predicted targeting categoryother localisation
Exons4
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789123.936086-CDS-C-tenellus_contig10271:1802..21141680789123.936086-CDS-C-tenellus_contig10271:1802..2114Choristocarpus tenellus KU2346CDSC-tenellus_contig10271 1803..2114 -
1680789123.9461455-CDS-C-tenellus_contig10271:2722..29561680789123.9461455-CDS-C-tenellus_contig10271:2722..2956Choristocarpus tenellus KU2346CDSC-tenellus_contig10271 2723..2956 -
1680789123.9598873-CDS-C-tenellus_contig10271:3291..34051680789123.9598873-CDS-C-tenellus_contig10271:3291..3405Choristocarpus tenellus KU2346CDSC-tenellus_contig10271 3292..3405 -
1680789123.9704223-CDS-C-tenellus_contig10271:3874..39851680789123.9704223-CDS-C-tenellus_contig10271:3874..3985Choristocarpus tenellus KU2346CDSC-tenellus_contig10271 3875..3985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789123.9785328-UTR-C-tenellus_contig10271:3985..40921680789123.9785328-UTR-C-tenellus_contig10271:3985..4092Choristocarpus tenellus KU2346UTRC-tenellus_contig10271 3986..4092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10271.1.1prot_C-tenellus_contig10271.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10271 1803..3985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10271.1.1

>prot_C-tenellus_contig10271.1.1 ID=prot_C-tenellus_contig10271.1.1|Name=mRNA_C-tenellus_contig10271.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=257bp
MSQLQPSQLSPGLSAKAKPYCPPAKSFAAGGVSRPSKEKKERAGPRTRRR
RRRDANPTLPPSGLTSSSGRTDERQNPRWVKVRSRAGNSGPWFGLCEDKW
LAQVIEGRGEGIPSRDEKLRLTLLHRNSSSLSPPLTPSGHLLPAKLLSPT
VSLDIPRPPRAGTRDGGSDGNNLNHSHCNHSDGCISLLLDLEHSPESNHH
LRKYSPESEPGLQDSFLCSWGVERGVLNGGGHSGVHSNGVSTVVGGEEMF
VGEGVAG
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mRNA from alignment at C-tenellus_contig10271:1803..4092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10271.1.1 ID=mRNA_C-tenellus_contig10271.1.1|Name=mRNA_C-tenellus_contig10271.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2290bp|location=Sequence derived from alignment at C-tenellus_contig10271:1803..4092- (Choristocarpus tenellus KU2346)
GTATTGTTATAGTGGTATGTAGTTTAGTTGATACTAAGGGATAGGCATAG
GGCAAGGAACTAAAACCAAATTCGAATAATACCTTCTACCAACACTGAAG
ATGAAAGATGAGCCAACTTCAGCCTTCACAACTTTCGCCAGGACTATCAG
CTAAGGCCAAGCCCTATTGTCCGCCTGCTAAATCGTTTGCTGCGGGGGGA
GTGAGTAGACCGTCAAAGGTCAGATTATTGGACAACGAGAACAAACCTAT
GGGCTATAGCATGCATGCAGACAGATATTCACCTTGCTTCAAGTTTCCCT
CACTATATGTGCTTACATCTCTGATATTTTCTAGATCTATTTTGCTTCGG
GAAGGGTTCCTTAGAGTTCTGCTTACCGTGGATTAAGAATAGTATCGCTG
GAATATAGATGTGTTTGAACAGTCATGGTTGCTTTTCTTAACCTGGTTTG
TCATCCTGTTGGTTCGTCTCCCCTCTCGGTAGCCTTCAAAATTGTGGTTA
GTGTGCTCACTTAAAAAAAATTACTATGCTAAAGTGCTCAATCCCTCGAT
GACTCGGTGGCCTTCTGGTGCATAGGAGAGAAGGCACCATTCCAATAGTC
CCACCCTTCACAACAGAAGGCGATCCAATGCAAGCACATCCCTCCACCTT
AGTGCCTCGTACAAATGGCTGTACTTCCATGAAGCAGGAAAAGAAAGAAA
GAGCAGGACCTCGCACACGCCGCAGGCGCCGAAGAGACGCAAACCCCACA
TTGCCTCCTTCAGGATTGACGTCCAGCTCGGGGAGGACCGACGAAAGACA
GGTAATGTCTTGTCTACAAGGTTCCCATGTCGAGGTTGTGCGACTGCAAG
GCTCGTTAACAAAGAGTGTACGAAGATTATTTGCTTTGAGCTCCAGCTCA
GAATTTTCAGCGGGATATGCTCTCCCACCAACTGGACCGTTTTCCATCAA
CCATCCATGTACTGTGTTACTGTTTAGACACCTCTTCAGTCTTGTCGTGA
GTGTTCGGGATAGAAAGATAATGCCTACAGACCTCTAAAGCTCCCGCATG
CAAGGGAGCCAACCCGTCTTGCCGTCTTGAAGAATCTTGACGATTTTTCT
GACTCTTTCACCGACATCCCACTCACCATACCTCAGAACCCTCGCTGGGT
CAAGGTCCGCAGCAGGGCGGGAAACAGTGGACCCTGGTTTGGTTTATGCG
AGGACAAATGGCTGGCACAGGTGATAGAGGGTCGAGGAGAAGGCATTCCC
TCGAGGGATGAAAAGCTACGGTTGACACTACTTCACCGGAACTCGTCAAG
CTTGAGTCCTCCACTAACTCCCAGTGGACACCTGCTGCCAGCAAAGTTGC
TCTCTCCAACCGTCTCTTTGGTGAGACCCTCCCATAACTCTGTATGTGAA
CTGAAAACCTCACCCTAATGAAGGATCCAAAGTCTCTTAGAGGGTAGAGC
CGCATCCAATTGGGAGTCAAAATCCAATGTTGCGATTTTGATGTAATTTT
GGCTATCGTGTTTGTTAGGACGTGTCAATATCTATGTTCCGAACACACCT
TTTCTGAACGTACACATTTTACCTACTCCAAAATATTTTGGAGTACGAAA
ATTTCATAAAAAACCCCATGGGAAGTCAAGCCCCAAATGGATAAATAGGG
CAAAACTCGTACCCTCTAAGATAATTTCACTCAAGGCTAGTTTACTTCTA
TACTTGGTGGGACAATAAAGCCAATTATTCTAGGATCTATGGTTCTACAT
GATATCTTTTTCCTGTTGCCAATGGGATGATATATGCAGTACATGTGTAT
TGTGGAATTAGTTTGGAATATTCTTGTACTGTTCGTTTTGTGTACGTAGG
ACTCTACATTGCTATCGATACATGATACCTCTATTTCCCTTGCTTAGTTG
CCTCCGTTCTCCATACCTTGTACAAACATTCATTCCTTTCTTTCGCATGC
ATTGCTCTGTTATCCGTTTGACCACTAGGATATCCCAAGACCTCCACGTG
CTGGTACCAGAGATGGTGGCAGTGATGGCAATAATTTGAACCATTCTCAC
TGCAATCATTCTGATGGCTGTATTTCGCTGCTGCTGGACTTGGAACACTC
ACCAGAGAGTAACCATCACCTCAGGAAGTATTCACCGGAAAGTGAACCAG
GCCTTCAAGACAGTTTCTTGTGCAGTTGGGGGGTGGAAAGGGGTGTTTTA
AACGGTGGTGGTCACAGTGGGGTGCACTCCAATGGAGTTTCTACAGTTGT
TGGTGGGGAAGAGATGTTTGTGGGGGAAGGTGTTGCTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10271:1803..4092-

>mRNA_C-tenellus_contig10271.1.1 ID=mRNA_C-tenellus_contig10271.1.1|Name=mRNA_C-tenellus_contig10271.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=771bp|location=Sequence derived from alignment at C-tenellus_contig10271:1803..4092- (Choristocarpus tenellus KU2346)
ATGAGCCAACTTCAGCCTTCACAACTTTCGCCAGGACTATCAGCTAAGGC
CAAGCCCTATTGTCCGCCTGCTAAATCGTTTGCTGCGGGGGGAGTGAGTA
GACCGTCAAAGGAAAAGAAAGAAAGAGCAGGACCTCGCACACGCCGCAGG
CGCCGAAGAGACGCAAACCCCACATTGCCTCCTTCAGGATTGACGTCCAG
CTCGGGGAGGACCGACGAAAGACAGAACCCTCGCTGGGTCAAGGTCCGCA
GCAGGGCGGGAAACAGTGGACCCTGGTTTGGTTTATGCGAGGACAAATGG
CTGGCACAGGTGATAGAGGGTCGAGGAGAAGGCATTCCCTCGAGGGATGA
AAAGCTACGGTTGACACTACTTCACCGGAACTCGTCAAGCTTGAGTCCTC
CACTAACTCCCAGTGGACACCTGCTGCCAGCAAAGTTGCTCTCTCCAACC
GTCTCTTTGGATATCCCAAGACCTCCACGTGCTGGTACCAGAGATGGTGG
CAGTGATGGCAATAATTTGAACCATTCTCACTGCAATCATTCTGATGGCT
GTATTTCGCTGCTGCTGGACTTGGAACACTCACCAGAGAGTAACCATCAC
CTCAGGAAGTATTCACCGGAAAGTGAACCAGGCCTTCAAGACAGTTTCTT
GTGCAGTTGGGGGGTGGAAAGGGGTGTTTTAAACGGTGGTGGTCACAGTG
GGGTGCACTCCAATGGAGTTTCTACAGTTGTTGGTGGGGAAGAGATGTTT
GTGGGGGAAGGTGTTGCTGGG
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